Bug#895529: ITP: r-cran-geometry -- GNU R mesh generation and surface tesselation

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-geometry
  Version : 0.3-6-1
  Upstream Author : David C. Sterratt <david.c.sterr...@ed.ac.uk>
* URL : https://cran.r-project.org/package=geometry
* License : GPL
  Programming Lang: GNU R
  Description : GNU R mesh generation and surface tesselation
 This GNU R package makes the qhull library (www.qhull.org)
 available in R, in a similar manner as in Octave and MATLAB. Qhull
 computes convex hulls, Delaunay triangulations, halfspace
 intersections about a point, Voronoi diagrams, furthest-site
 Delaunay triangulations, and furthest-site Voronoi diagrams. It
 runs in 2-d, 3-d, 4-d, and higher dimensions. It implements the
 Quickhull algorithm for computing the convex hull. Qhull does not
 support constrained Delaunay triangulations, or mesh generation of
 non-convex objects, but the package does include some R functions
 that allow for this. Currently the package only gives access to
 Delaunay triangulation and convex hull computation.


Remark: This package is needed to upgrade r-cran-ddalpha to its latest
upstream version.  It is maintained by the R-pkg team at
   https://salsa.debian.org/r-pkg-team/r-cran-geometry

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Bug#894904: ITP: r-cran-mlmetrics -- GNU R machine learning evaluation metrics

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-mlmetrics
  Version : 1.1.1
  Upstream Author : Yachen Yan <yanyache...@gmail.com>
* URL : https://cran.r-project.org/package=MLmetrics
* License : GPL
  Programming Lang: GNU R
  Description : GNU R machine learning evaluation metrics
 This package contains a collection of evaluation metrics for GNU R,
 including loss, score and utility functions, that measure regression,
 classification and ranking performance.


Remark: This package is needed to run the test suite of r-cran-caret.
It is maintained by the r-pkg team at
   https://salsa.debian.org/r-pkg-team/r-cran-mlmetrics

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Bug#894902: ITP: r-cran-earth -- GNU R multivariate adaptive regression splines

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-earth
  Version : 4.6.2
  Upstream Author : Stephen Milborrow <mi...@sonic.net>
* URL : https://cran.r-project.org/package=earth
* License : GPL
  Programming Lang: GNU R
  Description : GNU R multivariate adaptive regression splines
 This GNU R package builds regression models using the techniques in
 Friedman's papers "Fast MARS" and "Multivariate Adaptive Regression
 Splines" .
 (The term "MARS" is trademarked and thus not used in the name of the
 package.)


Remark: This package is needed to run the test suite of r-cran-caret.
It is maintained by the r-pkg team at
   https://salsa.debian.org/r-pkg-team/r-cran-earth

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Bug#894900: ITP: r-cran-plotmo -- GNU R plot a model's response and residuals

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-plotmo
  Version : 3.3.6
  Upstream Author : Stephen Milborrow <mi...@sonic.net>
* URL : https://cran.r-project.org/package=plotmo
* License : GPL
  Programming Lang: GNU R
  Description : GNU R plot a model's response and residuals
 Plot model surfaces for a wide variety of models
 using partial dependence plots and other techniques.
 Also plot model residuals and other information on the model.


Remark: This package is a predependency of r-cran-earth which is
needed to run the test suite of r-cran-caret.
It is maintained by the r-pkg team at
   https://salsa.debian.org/r-pkg-team/r-cran-plotmo

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Bug#894899: ITP: r-cran-mda -- GNU R mixture and flexible discriminant analysis

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-mda
  Version : 0.4-10
  Upstream Author : Trevor Hastie <has...@stanford.edu>
* URL : https://cran.r-project.org/package=mda
* License : GPL
  Programming Lang: GNU R
  Description : GNU R mixture and flexible discriminant analysis
 This package provides GNU R mixture and flexible discriminant analysis,
 multivariate adaptive regression splines (MARS), BRUTO, ...


Remark: This package is needed to run the test suite of r-cran-caret.
It is maintained by the r-pkg team at
   https://salsa.debian.org/r-pkg-team/r-cran-mda

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Accepted r-cran-mapproj 1.2.6-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 03 Apr 2018 22:23:17 +0200
Source: r-cran-mapproj
Binary: r-cran-mapproj
Architecture: source
Version: 1.2.6-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-mapproj - GNU R support for cartographic projections of map data
Changes:
 r-cran-mapproj (1.2.6-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
   * Secure URI in watch file
   * Testsuite: autopkgtest-pkg-r
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Accepted r-cran-broom 0.4.4-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 03 Apr 2018 10:37:17 +0200
Source: r-cran-broom
Binary: r-cran-broom
Architecture: source
Version: 0.4.4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-broom - convert statistical analysis objects into tidy data frames with 
G
Changes:
 r-cran-broom (0.4.4-1) unstable; urgency=medium
 .
   * New upstream version
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Accepted r-cran-mapdata 2.3.0-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 02 Apr 2018 20:57:24 +0200
Source: r-cran-mapdata
Binary: r-cran-mapdata
Architecture: source
Version: 2.3.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-mapdata - GNU R support for producing geographic maps (supplemental 
data)
Changes:
 r-cran-mapdata (2.3.0-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
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Accepted r-cran-psych 1.8.3.3-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 02 Apr 2018 00:12:23 +0200
Source: r-cran-psych
Binary: r-cran-psych
Architecture: source
Version: 1.8.3.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-psych - GNU R procedures for psychological, psychometric, and 
personality
Changes:
 r-cran-psych (1.8.3.3-1) unstable; urgency=medium
 .
   * New upstream version
   * Fix Vcs-Browser
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Accepted r-cran-spdata 0.2.8.3-1 (source) into unstable

[Andreas Tille]

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Date: Thu, 29 Mar 2018 11:22:09 +0200
Source: r-cran-spdata
Binary: r-cran-spdata
Architecture: source
Version: 0.2.8.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-spdata - GNU R datasets for spatial analysis
Changes:
 r-cran-spdata (0.2.8.3-1) unstable; urgency=medium
 .
   * New upstream version
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Accepted r-cran-coin 1.2-2-3 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Wed, 28 Mar 2018 22:43:55 +0200
Source: r-cran-coin
Binary: r-cran-coin
Architecture: source
Version: 1.2-2-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-coin - GNU R package providing conditional inference procedures
Closes: 882865
Changes:
 r-cran-coin (1.2-2-3) unstable; urgency=medium
 .
   * Team upload.
   * debian/tests/control: Depends: r-cran-libcoin
 Closes: #882865
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Bug#805395: predict.gbm() using single.tree=TRUE does not return the correct predictions with multinomial distribution

[Andreas Tille]

Hi David,

thanks for your quick response.

I need to admit I'm lacking the background to understand your example
but I read your mail that you agree that version 2.1.1 is buggy.  The
bug does not contain any input data to reproduce the issue for version
2.1.3.  Would you be able to reproduce it or may be it is even fixed
in the latest version?  If not could you imagine a fix or do you think
it can be fixed in the upcoming gbm3?  If yes to the last question is
there any estimation when gbm3 will be available from CRAN?

Kind regards

  Andreas

On Tue, Mar 27, 2018 at 09:47:47AM -0700, David Paulsen wrote:
> Hello,
> 
> I clearly could have provided better documentation.
> 
> There was an issue I believe in the predict function when single.tree was
> set to TRUE.
> 
> The first 6 trees of the model are printed out to show the the first two
> trees for each of the three classes.
> 
> The first set of predictions are shown for using 1 and 2 trees.
> 
> The maths show that the manual addition of values from each of the trees
> match the first set of predictions.
> 
> The second set of predictions do not match the expected result from each
> tree.
> 
> Example:
> search document for 0.1126044 shows that the value of a two-tree prediction
> matches arithmetically, but the addend to 0.1126044 is not found in results
> for single.tree prediction.
> 
> search document for -0.04196866 shows that this value is found
> in predictions for two-tree sum and single.tree = TRUE result, and switches
> class position from prediction set 1 to prediction set1 (single.tree).
> 
> David

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Accepted r-cran-lava 1.6-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Tue, 27 Mar 2018 14:46:53 +0200
Source: r-cran-lava
Binary: r-cran-lava
Architecture: source
Version: 1.6-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-lava - GNU R latent variable models
Changes:
 r-cran-lava (1.6-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
   * New Build-Depends: r-cran-squarem
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Bug#805395: predict.gbm() using single.tree=TRUE does not return the correct predictions with multinomial distribution

[Andreas Tille]

Hello Harry,

On Tue, Mar 27, 2018 at 02:41:28PM +0100, Harry Southworth wrote:
> That post is about 2.5 years old and the version of gbm is 2.1.1.

That's correct.  The original maintainer seems to have lost interest and
I'm now trying to polish the list of bugs in any R package in Debian.

> The version on CRAN is now 2.1.3 but has status ORPHANED.

Thats the currently packaged version of gbm in Debian but I have no
sign that the issue has changed (bug reporter is in CC).
 
> Since then, gbm maintenance got moved around a couple more times. You
> can find it's current page here:
> https://github.com/gbm-developers
> 
> To address, the question: I don't understand it.

Puh, that's relaxing for me since I do not understanding it as well. ;-)

> However, I do recall
> that there were a number of known bugs in the multinomial
> functionality and that that functionality was dropped from gbm3 (a
> newer version, rewritten from the ground up, but whose development
> appears to have stalled).
> 
> I've posted in GitHub, but don't know how likely it is that you'll get
> a helpful response.

That's a very helpful response.  I subscribed issue #21 and will wait
for a better answer.
 
> Sorry not to be more helpful,

Thanks a lot for the quick response

  Andreas.

Control: forwarded -1 https://github.com/gbm-developers/gbm/issues/21
 
> On 27 March 2018 at 13:27, Andreas Tille <andr...@an3as.eu> wrote:
> > Hello Harry,
> >
> > the R packaging team is maintaining gbm in Debian.  A user has filed a
> > bug report against version 2.1.1 which I would like to bring to your
> > attention.  Please have a look here where the problem is explicitly
> > described:
> >
> > https://bugs.debian.org/805395
> >
> > Could you please comment on this?  I admit I do not fully understand
> > what exactly is incorrect here and what to expect.  May be some test
> > case would help to confirm the integrity of the code.
> >
> > Kind regards
> >
> >Andreas.
> >
> >
> > Control: tags -1 help
> > Control: forwarded -1 Harry Southworth <harry.southwo...@gmail.com>
> >
> >
> > --
> > http://fam-tille.de
> 

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Bug#805395: predict.gbm() using single.tree=TRUE does not return the correct predictions with multinomial distribution

[Andreas Tille]

Hello Harry,

the R packaging team is maintaining gbm in Debian.  A user has filed a
bug report against version 2.1.1 which I would like to bring to your
attention.  Please have a look here where the problem is explicitly
described:

https://bugs.debian.org/805395

Could you please comment on this?  I admit I do not fully understand
what exactly is incorrect here and what to expect.  May be some test
case would help to confirm the integrity of the code.

Kind regards

   Andreas.


Control: tags -1 help
Control: forwarded -1 Harry Southworth 


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Bug#816424: Please support recent version of libuv

[Andreas Tille]

Hi Joe,

the Debian R packaging team maintains your httpuv package in Debian.
There was a bug reported[1] and the bug reporter suggested the solution
to replace the code copy of libuv inside httpuv by the Debian packaged
library.  I tried to do so but I was running into several build errors
which are caused by the fact that your copy is of

$ head -n1 ChangeLog 
2013.07.26, Version 0.10.13 (Stable)

while Debian has packaged

$ head -n1 ChangeLog 
2017.12.02, Version 1.18.0 (Stable)


Could you imagine to upgrade your internal code copy to the recent
version and adapt your code to work with the recent API?

Kind regards

Andreas.

Control: tags -1 upstream
COntrol: forwarded -1 Joe Cheng 


[1] https://bugs.debian.org/816424

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Bug#887682: r-cran-utf8: FTBFS on m68k: missing value where TRUE/FALSE needed

[Andreas Tille]

On Sun, Mar 25, 2018 at 08:53:22PM -0400, Aaron M. Ucko wrote:
> Dylan Aïssi  writes:
> 
> > This package was built correctly for m68k on 2018-02-27 [1].
> > Can we close this bug?
> 
> Yes, please.  IIRC, this failure turned out to stem from a problem with
> the build setup (specifically, a qemu bug); sorry for the noise.

Question: Is real m68k hardware used at all or is it just some people
like you who run qemu instances for whatever reason?  This is an honest
question since I'm pretty sure that no scientific software (like R and
others) have any use on m68k and I'm afraid it just drains time from
you (and other porters) and maintainers.

Kind regards

   Andreas.

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Bug#894031: ITP: r-cran-multcompview -- GNU R visualizations of paired comparisons

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-multcompview
  Version : 0.1-7
  Upstream Author : Spencer Graves, Hans-Peter Piepho and Luciano Selzer
* URL : https://cran.r-project.org/package=multcompView
* License : GPL
  Programming Lang: GNU R
  Description : GNU R visualizations of paired comparisons
 Convert a logical vector or a vector of p-values or a correlation,
 difference, or distance matrix into a display identifying the pairs
 for which the differences were not significantly different.
 Designed for use in conjunction with the output of functions like
 TukeyHSD, dist{stats}, simint, simtest, csimint, csimtest{multcomp},
 friedmanmc, kruskalmc{pgirmess}.


Remark: This package is needed to run the test suite of r-cran-lsmeans
  (see #877409).  It will be maintained by the r-pkg team at
  https://salsa.debian.org/r-pkg-team/r-cran-multcompview

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Accepted r-cran-coin 1.2-2-2 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 24 Mar 2018 15:26:21 +0100
Source: r-cran-coin
Binary: r-cran-coin
Architecture: source
Version: 1.2-2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-coin - GNU R package providing conditional inference procedures
Changes:
 r-cran-coin (1.2-2-2) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Secure URI in watch file
   * Standards-Version: 4.1.3
   * debhelper 11
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Accepted r-cran-mcmcpack 1.4-2-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 24 Mar 2018 14:24:55 +0100
Source: r-cran-mcmcpack
Binary: r-cran-mcmcpack
Architecture: source
Version: 1.4-2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-mcmcpack - R routines for Markov chain Monte Carlo model estimation
Changes:
 r-cran-mcmcpack (1.4-2-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Secure URI in watch file
   * Standards-Version: 4.1.3
   * debhelper 11
   * Testsuite: autopkgtest-pkg-r
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r-cran-mcmcpack_1.4-2-1.debian.tar.xz
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Accepted r-cran-erm 0.16-0-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 24 Mar 2018 13:35:23 +0100
Source: r-cran-erm
Binary: r-cran-erm
Architecture: source
Version: 0.16-0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-erm - GNU R package for 'extended Rasch modelling'
Changes:
 r-cran-erm (0.16-0-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Secure URI in watch file
   * Standards-Version: 4.1.3
   * Testsuite: autopkgtest-pkg-r
   * debhelper 11
   * Document binary data files in d/README.source
   * Fix permissions
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r-cran-erm_0.16-0-1.debian.tar.xz
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r-cran-erm_0.16-0-1_amd64.buildinfo

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Accepted r-cran-bayesm 3.1-0.1-2 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 24 Mar 2018 08:15:42 +0100
Source: r-cran-bayesm
Binary: r-cran-bayesm
Architecture: source
Version: 3.1-0.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-bayesm - GNU R package for Bayesian inference
Closes: 857414
Changes:
 r-cran-bayesm (3.1-0.1-2) unstable; urgency=medium
 .
   * Team upload
   * Do not link to non-existing docs
 Closes: #857414
   * Standards-Version: 4.1.3
   * debhelper 11
   * Secure URI in watch file
Checksums-Sha1:
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r-cran-bayesm_3.1-0.1-2.debian.tar.xz
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r-cran-bayesm_3.1-0.1-2_source.buildinfo
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Bug#816424: Failed to replace libuv1 in r-cran-httpuv

[Andreas Tille]

Control: tags -1 help

Hi,

I tried to follow the advise given in bug #816424 and commited an
according change to r-cran-httpuv Git[1].  Unfortunately this ends up
in a series of errors like this:

http.cpp: In member function 'void HttpRequest::_on_request_read(uv_stream_t*, 
ssize_t, uv_buf_t)':
http.cpp:346:5: error: 'uv_err_t' was not declared in this scope
 uv_err_t err = uv_last_error(_pLoop);
 ^~~~
http.cpp:346:5: note: suggested alternative: 'uv_errno_t'
 uv_err_t err = uv_last_error(_pLoop);
 ^~~~
 uv_errno_t
http.cpp:347:9: error: 'err' was not declared in this scope
 if (err.code == UV_EOF /*|| err.code == UV_ECONNRESET*/) {
 ^~~
http.cpp:347:9: note: suggested alternative: 'erf'
 if (err.code == UV_EOF /*|| err.code == UV_ECONNRESET*/) {
 ^~~
 erf
...


Any idea how to fix this?

BTW, I have no idea why UDD did not mentioned the new upstream version
which was fetched by uscan without any problem.

Kind regards

   Andreas.

[1] https://salsa.debian.org/r-pkg-team/r-cran-httpuv

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Bug#893899: ITP: r-cran-libcoin -- GNU R linear test statistics for permutation inference

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-libcoin
  Version : 1.0-1
  Upstream Author : Torsten Hothorn <torsten.hoth...@r-project.org>
* URL : https://cran.r-project.org/package=libcoin
* License : GPL
  Programming Lang: GNU R
  Description : GNU R linear test statistics for permutation inference
 Basic infrastructure for linear test statistics and permutation
 inference in the framework of Strasser and Weber (1999)
 <http://epub.wu.ac.at/102/>. This package must not be used by end-users.
 CRAN package 'coin' implements all user interfaces and is ready to be
 used by anyone.


Remark: This package is needed to run the full test suite of
 r-cran-coin (see #882865).  It will be maintained by the r-pkg team at
  https://salsa.debian.org/r-pkg-team/r-cran-libcoin

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Bug#893895: dh-r: versioned dependencies are incorrect when epochs are present

[Andreas Tille]

On Fri, Mar 23, 2018 at 05:24:55PM +0100, Sébastien Villemot wrote:
> 
> I now realize that packages are supposed to be buildable without network
> access, so query the apt cache is the way to go.
> 
> I'm wondering how similar helpers for other languages solve this problem 
> (maybe
> they don't, i.e. they just decided to avoid epochs – at least it's what we are
> doing in the Debian Octave Group).

Too bad that I squashed this bug simply for esthetical reasons. :-(

On the other hand there exist other r-cran packages featuring epochs
since a long time (r-cran-sp is just one example).  So at least now
this problem has become visible.

Sorry for this

 Andreas.

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Accepted r-cran-rsdmx 1:0.5-11+dfsg-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 23 Mar 2018 16:21:52 +0100
Source: r-cran-rsdmx
Binary: r-cran-rsdmx
Architecture: source
Version: 1:0.5-11+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-rsdmx - GNU R package for the Statistical Data and Metadata Exchange 
(SDM
Closes: 867925
Changes:
 r-cran-rsdmx (1:0.5-11+dfsg-1) unstable; urgency=medium
 .
   * Team upload.
   * d/watch: do not mangle upstream version number
   * use epoch for version
 Closes: #867925
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Accepted r-cran-knitr 1.20-2 (source) into unstable

[Andreas Tille]

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Format: 1.8
Date: Fri, 23 Mar 2018 15:37:10 +0100
Source: r-cran-knitr
Binary: r-cran-knitr
Architecture: source
Version: 1.20-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-knitr - GNU R package for dynamic report generation using Literate 
Progra
Closes: 892199
Changes:
 r-cran-knitr (1.20-2) unstable; urgency=medium
 .
   * debian/tests/control: Depends: r-cran-tinytex
 Closes: #892199
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Bug#893877: ITP: r-cran-zeligverse -- GNU R easily install and load stable zelig packages

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-zeligverse
  Version : 0.1.1
  Upstream Author : Christopher Gandrud <zelig@gmail.com>
* URL : https://cran.r-project.org/package=zeligverse
* License : GPL
  Programming Lang: GNU R
  Description : GNU R easily install and load stable zelig packages
 This GNU R packacge provides an easy way to load stable Core Zelig and
 ancillary Zelig packages.  It is needed to run the full test suite of
 the package r-cran-zelig.


Remark: This package is needed to run the full test suite of
 r-cran-zelig (see #883002).  It will be maintained by the r-pkg team at
  https://salsa.debian.org/r-pkg-team/r-cran-zeligverse

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Bug#893872: ITP: r-cran-zeligei -- GNU R zelig ecological inference models

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-zeligei
  Version : 0.1-2
  Upstream Author : Christopher Gandrud, James Honaker
* URL : https://cran.r-project.org/package=ZeligEI
* License : GPL
  Programming Lang: GNU R
  Description : GNU R zelig ecological inference models
 This package provides an add-on for r-cran-zelig 5. It enables the use of a
 variety of  ecological inference models.


Remark: This package is part of a pyramid of dependencies to package
 r-cran-zeligverse which is needed to run the full test suite of
 r-cran-zelig (see #883002).  It will be maintained by the r-pkg team at
  https://salsa.debian.org/r-pkg-team/r-cran-zeligei

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Bug#893871: ITP: r-cran-ei -- GNU R ecological inference

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-ei
  Version : 1.3-3
  Upstream Author : James Honaker <zelig@gmail.com>
* URL : https://cran.r-project.org/package=ei
* License : GPL
  Programming Lang: GNU R
  Description : GNU R ecological inference
 This package contains the GNU R software accompanying Gary King's book: A
 Solution to the Ecological Inference Problem. (1997). Princeton University
 Press.  ISBN 978-0691012407.


Remark: This package is part of a pyramid of dependencies to package
 r-cran-zeligverse which is needed to run the full test suite of
 r-cran-zelig (see #883002).  It will be maintained by the r-pkg team at
  https://salsa.debian.org/r-pkg-team/r-cran-ei

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Bug#893859: ITP: r-cran-ucminf -- GNU R general-purpose unconstrained non-linear optimization

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-ucminf
  Version : 1.1-4
  Upstream Author : Hans Bruun Nielsen and Stig Bousgaard Mortensen
* URL : https://cran.r-project.org/package=ucminf
* License : GPL
  Programming Lang: GNU R
  Description : GNU R general-purpose unconstrained non-linear optimization
 An algorithm for general-purpose unconstrained non-linear optimization.
 The algorithm is of quasi-Newton type with BFGS updating of the inverse
 Hessian and soft line search with a trust region type monitoring of the
 input to the line search algorithm. The interface of 'ucminf' is
 designed for easy interchange with 'optim'.


Remark: This package is part of a pyramid of dependencies to package
 r-cran-zeligverse which is needed to run the full test suite of
 r-cran-zelig (see #883002).  It will be maintained by the r-pkg team at
  https://salsa.debian.org/r-pkg-team/r-cran-ucminf

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Bug#893857: ITP: r-cran-tmvtnorm -- GNU R truncated multivariate normal and student t distribution

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-tmvtnorm
  Version : 1.4-10
  Upstream Author : Stefan Wilhelm <wilh...@financial.com>
* URL : https://cran.r-project.org/package=tmvtnorm
* License : GPL
  Programming Lang: GNU R
  Description : GNU R truncated multivariate normal and student t 
distribution
 Random number generation for the truncated multivariate normal and
 Student t distribution. Computes probabilities, quantiles and densities,
 including one-dimensional and bivariate marginal densities. Computes
 first and second moments (i.e. mean and covariance matrix) for the
 double-truncated multinormal case.


Remark: This package is part of a pyramid of dependencies to package
 r-cran-zeligverse which is needed to run the full test suite of
 r-cran-zelig (see #883002).  It will be maintained by the r-pkg team at
  https://salsa.debian.org/r-pkg-team/r-cran-tmvtnorm

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Bug#893856: ITP: r-cran-gmm -- GNU R generalized method of moments and generalized empirical likelihood

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-gmm
  Version : 1.6-2
  Upstream Author : Pierre Chausse <pchau...@uwaterloo.ca>
* URL : https://cran.r-project.org/package=gmm
* License : GPL
  Programming Lang: GNU R
  Description : GNU R generalized method of moments and generalized 
empirical likelihood
 This GNU R package is a complete suite to estimate models based on
 moment conditions. It includes the two step Generalized method of
 moments (Hansen 1982; ), the iterated GMM and
 continuous updated estimator (Hansen, Eaton and Yaron 1996;
 ) and several methods that belong to the
 Generalized Empirical Likelihood family of estimators (Smith 1997;
 , Kitamura 1997;
 , Newey and Smith 2004;
 , and Anatolyev 2005
 ).



Remark: This package is part of a pyramid of dependencies to package
 r-cran-zeligverse which is needed to run the full test suite of
 r-cran-zelig (see #883002).  It will be maintained by the r-pkg team at
  https://salsa.debian.org/r-pkg-team/r-cran-gmm

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Bug#893854: ITP: r-cran-eipack -- GNU R ecological inference and higher-dimension data management

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-eipack
  Version : 0.1-7
  Upstream Author : Olivia Lau <olivia@post.harvard.edu>
* URL : https://cran.r-project.org/package=eiPack
* License : GPL
  Programming Lang: GNU R
  Description : GNU R ecological inference and higher-dimension data 
management
 Provides methods for analyzing RxC ecological contingency
 tables using the extreme case analysis, ecological regression,
 and Multinomial-Dirichlet ecological inference models.  Also
 provides tools for manipulating higher-dimension data objects.


Remark: This package is part of a pyramid of dependencies to package
 r-cran-zeligverse which is needed to run the full test suite of
 r-cran-zelig (see #883002).  It will be maintained by the r-pkg team at
  https://salsa.debian.org/r-pkg-team/r-cran-eipack

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Bug#893853: ITP: r-cran-zeligchoice -- GNU R zelig choice models

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-zeligchoice
  Version : 0.9-6
  Upstream Author : Christine. Choirat, Christopher Gandrud, James Honaker
* URL : https://cran.r-project.org/package=ZeligChoice
* License : GPL
  Programming Lang: GNU R
  Description : GNU R zelig choice models
 This package provides an add-on for r-cran-zelig. Enables the use of a
 variety of logit and probit regressions.


Remark: This package is part of a pyramid of dependencies to package
 r-cran-zeligverse which is needed to run the full test suite of
 r-cran-zelig (see #883002).  It will be maintained by the r-pkg team at
  https://salsa.debian.org/r-pkg-team/r-cran-zeligchoice

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Bug#893850: ITP: r-cran-whatif -- GNU R evaluate counterfactuals

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-whatif
  Version : 1.5-9
  Upstream Author : Christopher Gandrud, Gary King, Ben Sabath, Heather Stoll, 
Langche Zeng
* URL : https://cran.r-project.org/package=WhatIf
* License : GPL
  Programming Lang: GNU R
  Description : GNU R evaluate counterfactuals
 Inferences about counterfactuals are essential for prediction,
 answering what if questions, and estimating causal effects.
 However, when the counterfactuals posed are too far from the data at
 hand, conclusions drawn from well-specified statistical analyses
 become based largely on speculation hidden in convenient modeling
 assumptions that few would be willing to defend. Unfortunately,
 standard statistical approaches assume the veracity of the model
 rather than revealing the degree of model-dependence, which makes this
 problem hard to detect. WhatIf offers easy-to-apply methods to
 evaluate counterfactuals that do not require sensitivity testing over
 specified classes of models. If an analysis fails the tests offered
 here, then we know that substantive inferences will be sensitive to at
 least some modeling choices that are not based on empirical evidence,
 no matter what method of inference one chooses to use. WhatIf
 implements the methods for evaluating counterfactuals discussed in
 Gary King and Langche Zeng, 2006, "The Dangers of Extreme
 Counterfactuals," Political Analysis 14 (2) ;
 and Gary King and Langche Zeng, 2007, "When Can History Be Our Guide? The
 Pitfalls of Counterfactual Inference," International Studies
 Quarterly 51 (March) .



Remark: This package is part of a pyramid of dependencies to package
 r-cran-zeligverse which is needed to run the full test suite of
 r-cran-zelig (see #883002).  It will be maintained by the r-pkg team at
  https://salsa.debian.org/r-pkg-team/r-cran-whatif

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Bug#893848: ITP: r-cran-pbmcapply -- GNU R tracking the progress of Mc*pply with progress bar

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-pbmcapply
  Version : 1.2.4
  Upstream Author : Kevin Kuang, Francesco Napolitano
* URL : https://cran.r-project.org/package=pbmcapply
* License : MIT
  Programming Lang: GNU R
  Description : GNU R tracking the progress of Mc*pply with progress bar
 This light-weight GNU R package helps you track and visualize the
 progress of parallel version of vectorized R functions (mc*apply).
 Parallelization (mc.core > 1) works only on *nix systems providing
 the fork() functionality.


Remark: This package is part of a pyramid of dependencies to package
 r-cran-zeligverse which is needed to run the full test suite of
 r-cran-zelig (see #883002).  It will be maintained by the r-pkg team at
  https://salsa.debian.org/r-pkg-team/r-cran-pbmcapply

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Accepted r-cran-xts 0.10-2-2 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 22 Mar 2018 17:24:00 +0100
Source: r-cran-xts
Binary: r-cran-xts
Architecture: source
Version: 0.10-2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-xts - GNU R package for time series analysis -- xts
Changes:
 r-cran-xts (0.10-2-2) unstable; urgency=medium
 .
   * Team upload
   * autopkgtest Depends: r-cran-fts
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Accepted r-cran-vgam 1.0-5-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 21 Mar 2018 15:52:46 +0100
Source: r-cran-vgam
Binary: r-cran-vgam
Architecture: source
Version: 1.0-5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-vgam - GNU R package for estimating vector generalized additive models
Changes:
 r-cran-vgam (1.0-5-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
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Accepted r-cran-zelig 5.1.6-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 21 Mar 2018 16:01:03 +0100
Source: r-cran-zelig
Binary: r-cran-zelig
Architecture: source
Version: 5.1.6-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-zelig - GNU R package providing a unified front-end for estimating 
statis
Changes:
 r-cran-zelig (5.1.6-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Secure URI in watch file
   * Standards-Version: 4.1.3
   * debhelper 11
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Accepted r-cran-tm 0.7-3-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 21 Mar 2018 15:46:21 +0100
Source: r-cran-tm
Binary: r-cran-tm
Architecture: source
Version: 0.7-3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-tm  - Text Mining functionality for R
Changes:
 r-cran-tm (0.7-3-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
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Accepted r-cran-matchit 3.0.2-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 21 Mar 2018 15:32:36 +0100
Source: r-cran-matchit
Binary: r-cran-matchit
Architecture: source
Version: 3.0.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-matchit - GNU R package of nonparametric matching methods
Changes:
 r-cran-matchit (3.0.2-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
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Accepted r-cran-lubridate 1.7.3-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 21 Mar 2018 15:26:35 +0100
Source: r-cran-lubridate
Binary: r-cran-lubridate
Architecture: source
Version: 1.7.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-lubridate - simplifies dealing with dates in R
Changes:
 r-cran-lubridate (1.7.3-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
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Accepted r-cran-pbapply 1.3-4-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 21 Mar 2018 15:40:02 +0100
Source: r-cran-pbapply
Binary: r-cran-pbapply
Architecture: source
Version: 1.3-4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-pbapply - GNU R package providing progress bars for vectorized R 
functions
Changes:
 r-cran-pbapply (1.3-4-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Secure URI in watch file
   * Standards-Version: 4.1.3
   * debhelper 11
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Accepted r-cran-conting 1.6.1-1 (source) into unstable

[Andreas Tille]

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Date: Wed, 21 Mar 2018 14:51:15 +0100
Source: r-cran-conting
Binary: r-cran-conting
Architecture: source
Version: 1.6.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-conting - GNU R package for Bayesian analysis of contingency tables
Changes:
 r-cran-conting (1.6.1-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Secure URI in watch file
   * Standards-Version: 4.1.3
   * debhelper 11
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Accepted r-cran-learnbayes 2.15.1-1 (source) into unstable

[Andreas Tille]

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Date: Mon, 19 Mar 2018 08:08:55 +0100
Source: r-cran-learnbayes
Binary: r-cran-learnbayes
Architecture: source
Version: 2.15.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-learnbayes - GNU R functions for learning bayesian inference
Changes:
 r-cran-learnbayes (2.15.1-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
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Accepted r-cran-vcd 1:1.4-4-1 (source) into unstable

[Andreas Tille]

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Format: 1.8
Date: Fri, 16 Mar 2018 13:28:32 +0100
Source: r-cran-vcd
Binary: r-cran-vcd
Architecture: source
Version: 1:1.4-4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-vcd - GNU R Visualizing Categorical Data
Changes:
 r-cran-vcd (1:1.4-4-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
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Accepted r-cran-sfsmisc 1.1-2-1 (source) into unstable

[Andreas Tille]

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Format: 1.8
Date: Fri, 16 Mar 2018 09:07:22 +0100
Source: r-cran-sfsmisc
Binary: r-cran-sfsmisc
Architecture: source
Version: 1.1-2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-sfsmisc - GNU R utilities from 'Seminar fuer Statistik' ETH Zurich
Changes:
 r-cran-sfsmisc (1.1-2-1) unstable; urgency=medium
 .
   * New upstream release
   * Standards-Version: 4.1.3
   * debhelper 11
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Accepted r-cran-survey 3.33-2-1 (source) into unstable

[Andreas Tille]

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Format: 1.8
Date: Fri, 16 Mar 2018 09:32:51 +0100
Source: r-cran-survey
Binary: r-cran-survey
Architecture: source
Version: 3.33-2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-survey - GNU R analysis of complex survey samples
Changes:
 r-cran-survey (3.33-2-1) unstable; urgency=medium
 .
   * New upstream version
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Accepted r-cran-msm 1.6.6-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 15 Mar 2018 17:20:02 +0100
Source: r-cran-msm
Binary: r-cran-msm
Architecture: source
Version: 1.6.6-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-msm - GNU R Multi-state Markov and hidden Markov models in continuous t
Changes:
 r-cran-msm (1.6.6-1) unstable; urgency=medium
 .
   * New upstream version
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Accepted r-cran-drr 0.0.3-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 15 Mar 2018 16:18:25 +0100
Source: r-cran-drr
Binary: r-cran-drr
Architecture: source
Version: 0.0.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-drr - GNU R dimensionality reduction via regression
Changes:
 r-cran-drr (0.0.3-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
   * Upstream does not provide a test suite any more so fall back to
 Testsuite: autopkgtest-pkg-r
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Accepted r-cran-devtools 1.13.5-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 15 Mar 2018 16:01:11 +0100
Source: r-cran-devtools
Binary: r-cran-devtools
Architecture: source
Version: 1.13.5-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-devtools - Tools to Make Developing R Packages Easier
Changes:
 r-cran-devtools (1.13.5-1) unstable; urgency=medium
 .
   * New upstream version
   * debhelper 11
   * Fix Vcs-Browser
   * Lintian overrides for example license files
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Accepted r-cran-ddalpha 1.3.1.1-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Thu, 15 Mar 2018 15:36:19 +0100
Source: r-cran-ddalpha
Binary: r-cran-ddalpha
Architecture: source
Version: 1.3.1.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-ddalpha - GNU R depth-based classification and calculation of data depth
Changes:
 r-cran-ddalpha (1.3.1.1-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
   * Upstream does not provide any tests any more
   * Lintian override for an issue we can't do anything about
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Bug#892996: ITP: r-cran-fts -- GNU R interface to tslib

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-fts
  Version : 0.9.9
  Upstream Author : Whit Armstrong <armstrong.w...@gmail.com>
* URL : https://cran.r-project.org/package=fts
* License : GPL
  Programming Lang: GNU R
  Description : GNU R interface to tslib
 This GNU R package provides fast operations for time series objects
 (a time series library in c++).


Remark: This package is needed to run the full test suite of
  r-cran-xts package as an autopkgtest.  It will be maintained
  by the r-pkg team at
 https://salsa.debian.org/r-pkg-team/r-cran-fts

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Accepted r-cran-dbplyr 1.2.1-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 15 Mar 2018 09:50:03 +0100
Source: r-cran-dbplyr
Binary: r-cran-dbplyr
Architecture: source
Version: 1.2.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-dbplyr - GNU R dplyr back end for databases
Changes:
 r-cran-dbplyr (1.2.1-1) unstable; urgency=medium
 .
   * New upstream version
   * debhelper 11
   * Fix Vcs-Browser
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Accepted r-cran-recipes 0.1.2-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 14 Mar 2018 14:45:11 +0100
Source: r-cran-recipes
Binary: r-cran-recipes
Architecture: source
Version: 0.1.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-recipes - GNU R preprocessing tools to create design matrices
Changes:
 r-cran-recipes (0.1.2-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
   * New Build-Depends: r-cran-broom
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Accepted r-cran-sp 1:1.2-7-1 (source) into unstable

[Andreas Tille]

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Hash: SHA256

Format: 1.8
Date: Wed, 14 Mar 2018 09:42:19 +0100
Source: r-cran-sp
Binary: r-cran-sp
Architecture: source
Version: 1:1.2-7-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-sp  - GNU R classes and methods for spatial data
Changes:
 r-cran-sp (1:1.2-7-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
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Accepted r-cran-yaml 2.1.18-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Wed, 14 Mar 2018 08:53:44 +0100
Source: r-cran-yaml
Binary: r-cran-yaml
Architecture: source
Version: 2.1.18-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-yaml - Methods to convert R data to YAML and back
Changes:
 r-cran-yaml (2.1.18-1) unstable; urgency=medium
 .
   * Team upload
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
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Accepted r-cran-rjson 0.2.15-2 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 13 Mar 2018 19:10:30 +0100
Source: r-cran-rjson
Binary: r-cran-rjson
Architecture: source
Version: 0.2.15-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-rjson - GNU R package for converting between R and JSON objects
Changes:
 r-cran-rjson (0.2.15-2) unstable; urgency=medium
 .
   * Team upload
 .
   [ Sébastien Villemot ]
   * Bump to debhelper compat level 10.
   * d/control: add missing ${misc:Depends}.
   * Switch from cdbs to dh-r.
   * d/copyright: use secure URL for format.
   * d/control: use canonical URLs for Vcs-* fields.
   * d/watch: bump to format version 4.
   * d/control: use canonical URL for homepage of CRAN packages.
   * d/watch: drop upstream version mangling.
 .
   [ Andreas Tille ]
   * Secure URI in watch file
   * cme fix dpkg-control
   * debhelper 11
   * Testsuite: autopkgtest-pkg-r
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Accepted r-cran-logspline 2.1.9-2 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 13 Mar 2018 17:26:38 +0100
Source: r-cran-logspline
Binary: r-cran-logspline
Architecture: source
Version: 2.1.9-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-logspline - GNU R package providing routines for the logspline density 
estima
Changes:
 r-cran-logspline (2.1.9-2) unstable; urgency=medium
 .
   * Team upload.
   * Secure URI in watch file
   * Convert from cdbs to dh-r
   * Standards-Version: 4.1.3
   * debhelper 11
   * Testsuite: autopkgtest-pkg-r
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Accepted r-cran-bayesfactor 0.9.12-2-3 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Tue, 13 Mar 2018 15:59:12 +0100
Source: r-cran-bayesfactor
Binary: r-cran-bayesfactor
Architecture: source
Version: 0.9.12-2-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-bayesfactor - GNU R Bayes factors for t-tests, ANOVAs and contingency 
tables
Changes:
 r-cran-bayesfactor (0.9.12-2-3) unstable; urgency=medium
 .
   * Team upload
   * Convert from cdbs to dh-r
   * Secure URI in watch file
   * Standards-Version: 4.1.3
   * debhelper 11
   * Canonical homepage for CRAN packages
   * Avoid privacy bearch issue with remote image
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Accepted r-cran-spatstat.utils 1.8-0-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 13 Mar 2018 13:31:38 +0100
Source: r-cran-spatstat.utils
Binary: r-cran-spatstat.utils
Architecture: source
Version: 1.8-0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-spatstat.utils - GNU R utility functions for r-cran-spatstat
Changes:
 r-cran-spatstat.utils (1.8-0-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
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Accepted r-cran-spatstat 1.55-0-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Tue, 13 Mar 2018 13:55:48 +0100
Source: r-cran-spatstat
Binary: r-cran-spatstat
Architecture: source
Version: 1.55-0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-spatstat - GNU R Spatial Point Pattern analysis, model-fitting, 
simulation,
Changes:
 r-cran-spatstat (1.55-0-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
   * New versioned Build-Depends: r-cran-spatstat.data (>= 1.2-0),
  r-cran-spatstat.utils (>= 1.8-0)
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Accepted r-cran-survey 3.33-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 12 Mar 2018 15:47:38 +0100
Source: r-cran-survey
Binary: r-cran-survey
Architecture: source
Version: 3.33-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-survey - GNU R analysis of complex survey samples
Changes:
 r-cran-survey (3.33-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
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Accepted r-cran-lhs 0.16-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Mon, 12 Mar 2018 08:49:16 +0100
Source: r-cran-lhs
Binary: r-cran-lhs
Architecture: source
Version: 0.16-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-lhs - GNU R Latin Hypercube Samples
Changes:
 r-cran-lhs (0.16-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
   * Enhance short description
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Accepted r-cran-gam 1.15-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Mon, 12 Mar 2018 08:37:16 +0100
Source: r-cran-gam
Binary: r-cran-gam
Architecture: source
Version: 1.15-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-gam - Generalized Additive Models for R
Changes:
 r-cran-gam (1.15-1) unstable; urgency=medium
 .
   * Team upload
   * New upstream version
   * cme fix dpkg-control
   * debhelper 11
   * Testsuite: autopkgtest-pkg-r
   * Secure URI in watch file
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Bug#892716: ITP: r-cran-squarem -- Squared Extrapolation Methods for Accelerating EM-Like Monotone Algorithms

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-squarem
  Version : 2017.10-1
  Upstream Author : Ravi Varadhan <ravi.varad...@jhu.edu>
* URL : https://cran.r-project.org/package=SQUAREM
* License : GPL
  Programming Lang: GNU R
  Description : Squared Extrapolation Methods for Accelerating EM-Like 
Monotone Algorithms
 Algorithms for accelerating the convergence of slow,
 monotone sequences from smooth, contraction mapping such as the
 EM algorithm. It can be used to accelerate any smooth, linearly
 convergent acceleration scheme.  A tutorial style introduction
 to this package is available in a vignette on the CRAN download
 page or, when the package is loaded in an R session, with
 vignette("SQUAREM").


Remark: This package is needed to upgrade r-cran-lave to the latest
upstream version.  It will be maintained by the r-pkg team at
   https://salsa.debian.org/r-pkg-team/r-cran-squarem

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Accepted r-cran-gnm 1.0-8-2 (source) into unstable

[Andreas Tille]

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Format: 1.8
Date: Mon, 12 Mar 2018 07:27:36 +0100
Source: r-cran-gnm
Binary: r-cran-gnm
Architecture: source
Version: 1.0-8-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-gnm - GNU R package for generalized nonlinear models
Changes:
 r-cran-gnm (1.0-8-2) unstable; urgency=medium
 .
   * Team upload.
   * Secure URI in watch file
   * cme fix dpkg-control
   * debhelper 11
   * Take over package into r-pkg team
   * Convert from cdbs to dh-r
   * Canonical Homepage for CRAN packages
   * Add autopkgtest
   * Document binary data files in debian/README.source
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Accepted r-cran-spdep 0.7-4-1 (source) into unstable

[Andreas Tille]

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Format: 1.8
Date: Mon, 12 Mar 2018 07:34:03 +0100
Source: r-cran-spdep
Binary: r-cran-spdep
Architecture: source
Version: 0.7-4-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-spdep - GNU R spatial dependence: weighting schemes, statistics and 
model
Changes:
 r-cran-spdep (0.7-4-1) unstable; urgency=medium
 .
   * New upstream version
   * d/watch: Remove useless opts
   * Standards-Version: 4.1.3
   * debhelper 11
   * New Build-Depends: r-cran-spdata
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Accepted r-cran-maptree 1.4-7-2 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 11 Mar 2018 19:15:01 +0100
Source: r-cran-maptree
Binary: r-cran-maptree
Architecture: source
Version: 1.4-7-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-maptree - GNU R mapping, pruning, and graphing tree models
Changes:
 r-cran-maptree (1.4-7-2) unstable; urgency=medium
 .
   * Team upload.
   * Secure URI in watch file
   * cme fix dpkg-control
   * debhelper 11
   * Convert from cdbs to dh-r
   * Canonical Homepage for CRAN packages
   * Testsuite: autopkgtest-pkg-r
   * Enhance description
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Accepted r-cran-shinyjs 1.0-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 11 Mar 2018 18:43:03 +0100
Source: r-cran-shinyjs
Binary: r-cran-shinyjs
Architecture: source
Version: 1.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-shinyjs - Easily Improve the User Experience of Your Shiny Apps in 
Seconds
Changes:
 r-cran-shinyjs (1.0-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
   * Drop unused lintian-overrides
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Accepted r-cran-rgenoud 5.8-1.0-1 (source) into unstable

[Andreas Tille]

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Format: 1.8
Date: Sun, 11 Mar 2018 18:27:50 +0100
Source: r-cran-rgenoud
Binary: r-cran-rgenoud
Architecture: source
Version: 5.8-1.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-rgenoud - R Version of GENetic Optimization Using Derivatives
Changes:
 r-cran-rgenoud (5.8-1.0-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
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Accepted r-cran-pillar 1.2.1-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
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Format: 1.8
Date: Sun, 11 Mar 2018 18:19:27 +0100
Source: r-cran-pillar
Binary: r-cran-pillar
Architecture: source
Version: 1.2.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-pillar - GNU R coloured formatting for columns
Changes:
 r-cran-pillar (1.2.1-1) unstable; urgency=medium
 .
   * New upstream version
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Bug#892621: ITP: r-cran-spdata -- GNU R datasets for spatial analysis

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-spdata
  Version : 0.2.8.1
  Upstream Author : Jakub Nowosad <nowosad.ja...@gmail.com>
* URL : https://cran.r-project.org/package=spData
* License : CC0-1.0
  Programming Lang: GNU R
  Description : GNU R datasets for spatial analysis
 Diverse spatial datasets for demonstrating, benchmarking and teaching
 spatial data analysis. It includes R data of class sf (defined by the
 package 'sf'), Spatial ('sp'), and nb ('spdep'). Unlike other spatial
 data packages such as 'rnaturalearth' and 'maps', it also contains data
 stored in a range of file formats including GeoJSON, ESRI Shapefile and
 GeoPackage. Some of the datasets are designed to illustrate specific
 analysis techniques. cycle_hire and cycle_hire_osm, for example, is
 designed to illustrate point pattern analysis techniques.


Remark: This package is needed to upgrade the package r-cran-spdep to
its latest upstream version.  It will be maintained by the r-pkg team
at
   https://salsa.debian.org/r-pkg-team/r-cran-spdata

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Bug#892469: ITP: r-cran-tinytex -- GNU R helper to compile LaTeX documents

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-tinytex
  Version : 0.4
  Upstream Author : Yihui Xie <x...@yihui.name>
* URL : https://cran.r-project.org/package=tinytex
* License : MIT
  Programming Lang: GNU R
  Description : GNU R helper to compile LaTeX documents
 GNU R Helper functions to install and maintain the 'LaTeX' distribution
 named 'TinyTeX' (<https://yihui.name/tinytex/>), a lightweight, cross-platform,
 portable, and easy-to-maintain version of 'TeX Live'. This package also
 contains helper functions to compile 'LaTeX' documents, and install missing
 'LaTeX' packages automatically.


Remark: This package is needed to run the autopkgtest of r-cran-knitr (see bug
#892199.  It will be maintained by the r-pkg team at
 https://salsa.debian.org/r-pkg-team/r-cran-tinytex

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Accepted r-cran-afex 0.19-1-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 08 Mar 2018 07:43:54 +0100
Source: r-cran-afex
Binary: r-cran-afex
Architecture: source
Version: 0.19-1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-afex - GNU R package for analyzing factorial experiments using ANOVA or
Changes:
 r-cran-afex (0.19-1-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
   * New Build-Depends: r-cran-emmeans
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Accepted r-cran-estimability 1.3-1 (source) into unstable

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sun, 04 Mar 2018 18:07:34 +0100
Source: r-cran-estimability
Binary: r-cran-estimability
Architecture: source
Version: 1.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-estimability - GNU R package providing tools for determining 
estimability of lin
Changes:
 r-cran-estimability (1.3-1) unstable; urgency=medium
 .
   * Team upload.
   * New upstream version
   * Secure watch file
   * Standards-Version: 4.1.3
   * debhelper 11
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Bug#892056: ITP: r-cran-emmeans -- GNU R estimated marginal means, aka least-squares means

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-emmeans
  Version : 1.1.2
  Upstream Author : Russell Lenth <russell-le...@uiowa.edu>
* URL : https://cran.r-project.org/package=emmeans
* License : GPL
  Programming Lang: GPL
  Description : GNU R estimated marginal means, aka least-squares means
 Obtain estimated marginal means (EMMs) for many linear, generalized
 linear, and mixed models. Compute contrasts or linear functions of EMMs,
 trends, and comparisons of slopes. Plots and compact letter displays.
 Least-squares means are discussed, and the term "estimated marginal means"
 is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
 in the linear model: An alternative to least squares means, The American
 Statistician 34(4), 216-221 .


Remark: This package is needed to upgrade r-cran-afex to the latest upstream
version.  It will be maintained by the r-pkg team at
https://salsa.debian.org/r-pkg-team/r-cran-emmeans

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Accepted r-cran-knitr 1.20-1 (source) into unstable

[Andreas Tille]

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Version: 1.20-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-knitr - GNU R package for dynamic report generation using Literate 
Progra
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 r-cran-knitr (1.20-1) unstable; urgency=medium
 .
   * New upstream version
   * Standards-Version: 4.1.3
   * debhelper 11
   * Some additional privacy breach patches
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Accepted r-cran-dt 0.4+dfsg-1 (source) into unstable

[Andreas Tille]

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Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-dt  - GNU R wrapper of the JavaScript library 'DataTables'
Changes:
 r-cran-dt (0.4+dfsg-1) unstable; urgency=medium
 .
   * New upstream version
   * debhelper 11
   * Build-Depends: r-cran-crosstalk
   * Versioned Build-Depends: r-cran-htmlwidgets (>= 1.0)
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Accepted r-cran-mclust 5.4-1~bpo9+1 (source amd64) into stretch-backports, stretch-backports

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 17 Feb 2018 21:03:20 +0100
Source: r-cran-mclust
Binary: r-cran-mclust
Architecture: source amd64
Version: 5.4-1~bpo9+1
Distribution: stretch-backports
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-mclust - Gaussian Mixture Modelling for Model-Based Clustering
Changes:
 r-cran-mclust (5.4-1~bpo9+1) stretch-backports; urgency=medium
 .
   * Rebuild for stretch-backports.
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Bug#888879: HELP needed for uploading a new debianisation of the Rheolef package

[Andreas Tille]

Uploaded, thanks for yor work on this, Andreas.

On Sun, Feb 18, 2018 at 04:23:26PM +0100, Pierre Saramito wrote:
> Hi Andreas,
> 
> I just commit with git a new release 6.7-6 of the debianisation
> of the rheolef package: it fixes a FTBS bug #79
> It also fixes others issues related to the previous 6.7-5 version:
> multiarch lib install directory and regeneration of
> patched autoconf/automake files (see d/changelog).
> 
> The upstream version is unchanged (6.7).
> 
> Could you please upload it in debian ?
> 
> Many thanks for your help.
> 
> Best regards,
> 
> Pierre
> --
> pierre.saram...@imag.fr
> Directeur de Recherche CNRS
> Laboratoire Jean Kuntzmann, Grenoble, France
> http://ljk.imag.fr/membres/Pierre.Saramito
> 

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Bug#887454: Re-uploaded console-bridge

[Andreas Tille]

Hi Jochen,

I'm putting Debian Science list in CC.  More information about this
discussion is in bug #887454.

On Sun, Feb 18, 2018 at 01:41:10AM +0100, Jochen Sprickerhof wrote:
> * Andreas Tille <ti...@debian.org> [2018-02-17 22:30]:
> > A not uploaded state has the target distribution "UNRELEASED".  Once it
> > is uploaded this is set to "unstable" and the commit log says something
> > like:
> > 
> >"Uploaded to unstable (or new)"
> > 
> > I think that's pretty obvious vor everybody even without a tag.
> 
> We had the UNRELEASED discussion before, so there are obviously different
> ways to do it. But I would call an upload a release, as in you should not
> modify that version anymore and also don't use the same version number again
> for something different. So you might as well tag it. I don't see a benefit
> of putting the tag afterwards, rather it would make it harder for tools like
> git-buildpackage to find a reference point for a new version. Also note that
> packages might get uploaded and used on other sites, so it's useful to have
> the tag as a reference point.
> If your way of doing it is really common practice, I would be glad to get
> some references for it.

Very simple:

   
https://debian-science.alioth.debian.org/debian-science-policy.html#idm45916846202048

The Debian Science team where this package is maintained has agreed upon
this policy.

> But otherwise we could just agree to have different
> views and stop this :).

I admit I have no big interest in keeping on this discussion, but it
makes things easier if members of a team follow the policy.

> > Its not about holding back version numbers.  As far as I know ftpmaster
> > is not really happy about Debian revisions different from "-1".
> 
> Do you have a reference for this? Because I see some packages with higher
> numbers in there and one I uploaded recently with a -2 got accepted pretty
> quick without a complaint.

I admit I'm to lazy to seek for references.  There are cases when
revisions with higher numbers accepted but what I said is that ftpmaster
"is not happy" - I did not say that it is a reason for rejection.

Kind regards

   Andreas.

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Bug#887454: Re-uploaded console-bridge

[Andreas Tille]

On Sat, Feb 17, 2018 at 07:18:11PM +0100, Jochen Sprickerhof wrote:
> * Andreas Tille <ti...@debian.org> [2018-02-17 19:13]:
> > I tend to disagree.  A package that's rejected by ftpmaster will not
> > reach the archive.  I'm tagging only those commits that have an
> > equivalent package inside the package pool.
> 
> But how would you know which state you uploaded to ftp-master?

A not uploaded state has the target distribution "UNRELEASED".  Once it
is uploaded this is set to "unstable" and the commit log says something
like:

"Uploaded to unstable (or new)"

I think that's pretty obvious vor everybody even without a tag.

> Also, version
> numbers are cheap, no need to hold them back ;).

Its not about holding back version numbers.  As far as I know ftpmaster
is not really happy about Debian revisions different from "-1".  Besides
this extra options are needed when building to add upstream tarball.

As far as I know this is good packaging practice - at least all team
members I know are doing it this way.

Kind regards

   Andreas.

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Bug#887454: Re-uploaded console-bridge

[Andreas Tille]

Hi Jochen,

On Sat, Feb 17, 2018 at 06:12:09PM +0100, Jochen Sprickerhof wrote:
> 
> * Andreas Tille <andr...@an3as.eu> [2018-02-17 13:48]:
> > I've re-uploaded console-bridge_0.4.0+dfsg-1 to new.
> 
> I did so as well yesterday, that's why your upload was rejected.

That's fine.

> > Please note: I have removed the changelog entry
> > 
> [..]
> > since this release never has hit the Debian mirrors.  Please note that
> > due to this change I've deleted the tag debian/0.4.0+dfsg-1.  I have not
> > set a new tag since this should be done after the package was accepted
> > by ftpmaster.
> 
> I added the tag and for me it makes sense to have it on the uploaded
> package. This makes it easier to track which version you uploaded to
> ftp-masters and in case you want to update the package in the new queue, you
> have to increase the number anyhow.

I tend to disagree.  A package that's rejected by ftpmaster will not
reach the archive.  I'm tagging only those commits that have an
equivalent package inside the package pool.

Kind regards

   Andreas.

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Bug#887454: Re-uploaded console-bridge

[Andreas Tille]

Hi Jose,

I've re-uploaded console-bridge_0.4.0+dfsg-1 to new.

Please note: I have removed the changelog entry


console-bridge (0.4.0-1) unstable; urgency=medium

  * New upstream version 0.4.0

 -- Jose Luis Rivero   Mon, 15 Jan 2018 18:21:19 
+


since this release never has hit the Debian mirrors.  Please note that
due to this change I've deleted the tag debian/0.4.0+dfsg-1.  I have not
set a new tag since this should be done after the package was accepted
by ftpmaster.

Further comment:  Next time please check lintian warnings.  Since it is
a pretty harmless one I simply left

W: console-bridge source: debian-rules-uses-unnecessary-dh-argument dh ... 
--parallel (line 12)

but it should be handled in next upload.

Thanks for your work on this package

  Andreas.

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Re: Rheolef moved to Git : problem to download/edit the debian files

[Andreas Tille]

Hi Pierre,

On Thu, Feb 08, 2018 at 10:34:50AM +0100, Pierre Saramito wrote:
> Many thanks for your rewrite and modernization 
> of the Debian files for the Rheolef package in rheolef-6.7-5.

You are welcome.
 
> For build time tests to run correctly,
> I have now to patch these files,
> but I have a technical problem:
> 
>   After the move from SVN to GIT of the package, I am no more able to 
> download & edit the files. 
> 
> I need to download, edit and upload the debian files,
> but I dont have any account on sources.debian.org 

You need to register an account on salsa.debian.org and ask for
membership of Debian Science team.  You also need to create your
personal Gitlab token.  Once this is setup you can simply do

   gbp clone g...@salsa.debian.org:science-team/rheolef.git
 
>   Any idea how to solve this in a simple way ?

Hope this helps.  Please keep on asking if you have trouble with details
but make sure you stick to the mailing list since I'm currently
traveling.
 
> Many thanks for your help for the Debianization of the package,
 
You are welcome

   Andreas. 

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Bug#889539: pandas FTBFS: test failures

[Andreas Tille]

On Tue, Feb 06, 2018 at 03:51:27PM +, Lumin wrote:
> Apart from that, the pandas packaging needs a patch [2] to reduce
> autopkgtest failures.

As always:  Please push your patches. :-)
You and I are in the same position: We are team members of the maintainer
team.  I even have the strong impression, that you are the more competent
team member than me in terms of pandas.  So please do not be shy. ;-)

Thanks a lot and feel to keep on pushing promising patches

Andreas. 
 
> [2]
> diff --git a/debian/tests/control b/debian/tests/control
> index 38521c8..ab54101 100644
> --- a/debian/tests/control
> +++ b/debian/tests/control
> @@ -15,6 +15,7 @@ Depends: python-all,
>   python-xlwt,
>   python-bs4,
>   python-html5lib,
> + python-pytest,
>   xauth,
>   xvfb
> 
> @@ -29,5 +30,6 @@ Depends: python3-all,
>   python3-tk,
>   python3-tz,
>   python3-bs4,
> + python3-pytest,
>   xauth,
>   xvfb

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Bug#889539: pandas FTBFS: test failures

[Andreas Tille]

Hi Lumin,

you did a really good job on latest pandas issues.  Do you think you can
have a look at this problem as well?

BTW, to upgrade pandas to the latest upstream version python-moto is
needed.  I prepared the packaging (#777089) and may be there is only a
minor issue to finalise this (see [1]).  It might be a sensible strategy
To upgrade to latest pandas upstream to not spent to much time on the
old code - however, I have no idea about compatibility issues of all of
its rdepends.

Kind regards

Andreas.

[1] https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=777089#129

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Bug#888879: rheolef FTBFS on several architectures: test runs forever

[Andreas Tille]

Hi Pierre,

as I mentioned on Debian Science maintainers list[1] this problem does
not come unexpected.  Pierre, could you please confirm whether you keep
on maintaining this package and will check this issue?

>From my uneducated perspective the test failures always existed but the
test were simply not run before.  Thus a first course of action might be
to ask ftpmaster for removal of those architectures where rheolef does
not build and reduce severity of the bug to say "important".

Please note that I do not have any time resources to work on this
package.

Kind regards

  Andreas.

[1] 
https://lists.alioth.debian.org/pipermail/debian-science-maintainers/2018-January/057544.html

On Tue, Jan 30, 2018 at 10:24:18PM +0200, Adrian Bunk wrote:
> Source: rheolef
> Version: 6.7-5
> Severity: serious
> 
> https://buildd.debian.org/status/package.php?p=rheolef=sid
> 
> ...
>   mpirun -np 1 ./form_mass_bdr_tst -app P2 -weight yz -I my_cube_TP-5-v2 
> left >/dev/null 2>/dev/null
>   mpirun -np 2 ./form_mass_bdr_tst -app P2 -weight yz -I my_cube_TP-5-v2 
> left >/dev/null 2>/dev/null
>   mpirun -np 3 ./form_mass_bdr_tst -app P2 -weight yz -I my_cube_TP-5-v2 
> left >/dev/null 2>/dev/null
>   mpirun -np 1 ./form_mass_bdr_tst -app P2 -weight yz -I my_cube_TP-5-v2 
> right >/dev/null 2>/dev/null
>   mpirun -np 2 ./form_mass_bdr_tst -app P2 -weight yz -I my_cube_TP-5-v2 
> right >/dev/null 2>/dev/null
> E: Build killed with signal TERM after 150 minutes of inactivity
> 
> 
> I've reproduced this on i386, two processes are running
> forever (aborted after 6 hours on a fast CPU) with 100% CPU.
> 
> Backtraces:
> 
> Thread 3 (Thread 0xf50ffb40 (LWP 29032)):
> #0  0xf7ed6db9 in __kernel_vsyscall ()
> #1  0xf70fabd3 in __GI___poll (fds=0xf47005d0, nfds=2, timeout=360) at 
> ../sysdeps/unix/sysv/linux/poll.c:29
> #2  0xf5caed4a in poll (__timeout=360, __nfds=2, __fds=0xf47005d0) at 
> /usr/include/i386-linux-gnu/bits/poll2.h:46
> #3  poll_dispatch (base=0x578eb9c0, tv=0xf50f9bfc) at poll.c:165
> #4  0xf5ca59e9 in opal_libevent2022_event_base_loop (base=, 
> flags=) at event.c:1630
> #5  0xf5c6b3bd in progress_engine (obj=0x578eb950) at 
> runtime/opal_progress_threads.c:105
> #6  0xf5df6316 in start_thread (arg=0xf50ffb40) at pthread_create.c:465
> #7  0xf7105296 in clone () at ../sysdeps/unix/sysv/linux/i386/clone.S:108
> 
> Thread 2 (Thread 0xf5ac5b40 (LWP 29031)):
> #0  0xf7ed6db9 in __kernel_vsyscall ()
> #1  0xf71053fa in __GI_epoll_pwait (epfd=7, events=0x578ea930, maxevents=32, 
> timeout=-1, set=0x0)
> at ../sysdeps/unix/sysv/linux/epoll_pwait.c:42
> #2  0xf710569a in epoll_wait (epfd=7, events=0x578ea930, maxevents=32, 
> timeout=-1)
> at ../sysdeps/unix/sysv/linux/epoll_wait.c:30
> #3  0xf5ca199a in epoll_dispatch (base=0x578ea7a0, tv=0x0) at epoll.c:407
> #4  0xf5ca59e9 in opal_libevent2022_event_base_loop (base=, 
> flags=) at event.c:1630
> #5  0xf5af23eb in progress_engine (obj=0x578ea7a0) at 
> src/util/progress_threads.c:52
> #6  0xf5df6316 in start_thread (arg=0xf5ac5b40) at pthread_create.c:465
> #7  0xf7105296 in clone () at ../sysdeps/unix/sysv/linux/i386/clone.S:108
> 
> Thread 1 (Thread 0xf5b4fe00 (LWP 29002)):
> #0  0xf7ed67f5 in ?? ()
> #1  0xf7ed6b43 in __vdso_clock_gettime ()
> #2  0xf7112961 in __GI___clock_gettime (clock_id=1, tp=0xffb74194) at 
> ../sysdeps/unix/clock_gettime.c:115
> #3  0xf5cc3297 in opal_timer_linux_get_usec_clock_gettime () at 
> timer_linux_component.c:197
> #4  0xf5c669c3 in opal_progress () at runtime/opal_progress.c:197
> #5  0xf74b5e05 in sync_wait_st (sync=) at 
> ../opal/threads/wait_sync.h:80
> #6  ompi_request_default_wait_all (count=2, requests=0xffb742e4, 
> statuses=0x0) at request/req_wait.c:221
> #7  0xf750640d in ompi_coll_base_allreduce_intra_recursivedoubling 
> (sbuf=0x57951030, rbuf=0x57a9b400, count=2, 
> dtype=0xf7565140 , op=0xf7573e60 , 
> comm=0xf7569520 , 
> module=0x57976fa0) at base/coll_base_allreduce.c:225
> #8  0xe991f640 in ompi_coll_tuned_allreduce_intra_dec_fixed (sbuf=0x57951030, 
> rbuf=0x57a9b400, count=2, 
> dtype=0xf7565140 , op=0xf7573e60 , 
> comm=0xf7569520 , 
> module=0x57976fa0) at coll_tuned_decision_fixed.c:66
> #9  0xf74c5b77 in PMPI_Allreduce (sendbuf=0x57951030, recvbuf=0x57a9b400, 
> count=2, 
> datatype=0xf7565140 , op=0xf7573e60 , 
> comm=0xf7569520 )
> at pallreduce.c:107
> #10 0xf7b476cf in boost::mpi::detail::all_reduce_impl std::plus > (comm=..., 
> in_values=0x57951030, n=n@entry=2, out_values=0x57a9b400) at 
> /usr/include/boost/mpi/collectives/all_reduce.hpp:36
> #11 0xf7b58fc0 in boost::mpi::all_reduce int> > (out_values=, n=2, 
> in_values=, comm=..., op=...) at 
> /usr/include/boost/mpi/collectives/all_reduce.hpp:93
> #12 rheolef::mpi_assembly_begin > >, rheolef::disarray_rep rheolef::distributed, std::allocator >::message_type, 
> 

Accepted r-cran-ggvis 0.4.3+dfsg-1~bpo9+1 (source all) into stretch-backports, stretch-backports

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 26 Jan 2018 08:16:49 +0100
Source: r-cran-ggvis
Binary: r-cran-ggvis
Architecture: source all
Version: 0.4.3+dfsg-1~bpo9+1
Distribution: stretch-backports
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-ggvis - GNU R interactive grammar of graphics
Changes:
 r-cran-ggvis (0.4.3+dfsg-1~bpo9+1) stretch-backports; urgency=medium
 .
   * Rebuild for stretch-backports.
   * Build-Depends: debhelper (11~)
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r-cran-ggvis_0.4.3+dfsg-1~bpo9+1_all.deb
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Accepted r-cran-rlist 0.4.6.1-1~bpo9+1 (source all) into stretch-backports, stretch-backports

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 26 Jan 2018 09:34:01 +0100
Source: r-cran-rlist
Binary: r-cran-rlist
Architecture: source all
Version: 0.4.6.1-1~bpo9+1
Distribution: stretch-backports
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-rlist - GNU R toolbox for non-tabular data manipulation
Changes:
 r-cran-rlist (0.4.6.1-1~bpo9+1) stretch-backports; urgency=medium
 .
   * Rebuild for stretch-backports.
Checksums-Sha1:
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r-cran-rlist_0.4.6.1-1~bpo9+1_all.deb
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r-cran-rlist_0.4.6.1-1~bpo9+1_amd64.buildinfo
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r-cran-rlist_0.4.6.1-1~bpo9+1.dsc
 ddaa6b922e811f3e9d9275fb31c5a77e 2324 gnu-r optional 
r-cran-rlist_0.4.6.1-1~bpo9+1.debian.tar.xz
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r-cran-rlist_0.4.6.1-1~bpo9+1_all.deb
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Accepted r-cran-wordcloud 2.5-1~bpo9+1 (source amd64) into stretch-backports, stretch-backports

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 27 Jan 2018 19:15:23 +0100
Source: r-cran-wordcloud
Binary: r-cran-wordcloud
Architecture: source amd64
Version: 2.5-1~bpo9+1
Distribution: stretch-backports
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-wordcloud - word clouds with GNU R
Changes:
 r-cran-wordcloud (2.5-1~bpo9+1) stretch-backports; urgency=medium
 .
   * Rebuild for stretch-backports.
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Accepted r-cran-r6 2.2.2-2~bpo9+1 (source all) into stretch-backports, stretch-backports

[Andreas Tille]

-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Fri, 26 Jan 2018 08:22:35 +0100
Source: r-cran-r6
Binary: r-cran-r6
Architecture: source all
Version: 2.2.2-2~bpo9+1
Distribution: stretch-backports
Urgency: medium
Maintainer: Debian Science Maintainers 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 r-cran-r6  - R classes with reference semantics
Changes:
 r-cran-r6 (2.2.2-2~bpo9+1) stretch-backports; urgency=medium
 .
   * Rebuild for stretch-backports.
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Bug#888936: ITP: r-cran-mclust -- Gaussian Mixture Modelling for Model-Based Clustering

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>

* Package name: r-cran-mclust
  Version : 5.4-1
  Upstream Author : Chris Fraley, Adrian E. Raftery, Luca Scrucca, Thomas 
Brendan Murphy, Michael Fop
* URL : https://cran.r-project.org/package=mclust
* License : GPL
  Programming Lang: GNU R
  Description : Gaussian Mixture Modelling for Model-Based Clustering
 This GNU R package supports Gaussian Mixture Modelling for Model-Based
 Clustering, Classification, and Density Estimation.
 .
 Gaussian finite mixture models fitted via EM algorithm for model-based
 clustering, classification, and density estimation, including Bayesian
 regularization, dimension reduction for visualisation, and
 resampling-based inference.


Remark: This package will be maintained by the r-pkg team at
https://salsa.debian.org/r-pkg-team/r-cran-mclust.git

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Accepted wxastrocapture 1.8.1+git20140821+dfsg-2 (source) into unstable

[Andreas Tille]

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Format: 1.8
Date: Tue, 30 Jan 2018 14:48:46 +0100
Source: wxastrocapture
Binary: wxastrocapture
Architecture: source
Version: 1.8.1+git20140821+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 wxastrocapture - Windows linuX Astronomy Capture
Changes:
 wxastrocapture (1.8.1+git20140821+dfsg-2) unstable; urgency=medium
 .
   * Team upload.
   * Moved packaging from SVN to Git
   * cme fix dpkg-control
   * Drop manual debug package
   * debhelper 11
   * DEP5 fixes
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Accepted v-sim 3.7.2-5 (source) into unstable

[Andreas Tille]

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Format: 1.8
Date: Tue, 30 Jan 2018 12:45:43 +0100
Source: v-sim
Binary: v-sim v-sim-common gir1.2-v-sim-1.0 v-sim-doc v-sim-plugins python-v-sim
Architecture: source
Version: 3.7.2-5
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Team 
<debian-science-maintainers@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
 gir1.2-v-sim-1.0 - Visualize atomic structures (gir bindings)
 python-v-sim - Python bindings for V_Sim (a 3D visualization package)
 v-sim  - Visualize atomic structures
 v-sim-common - Visualize atomic structures (support files)
 v-sim-doc  - Visualize atomic structures (example files)
 v-sim-plugins - Plugins for V_Sim (a 3D visualization package)
Changes:
 v-sim (3.7.2-5) unstable; urgency=medium
 .
   * Team upload.
   * Moved packaging from SVN to Git
   * cme fix dpkg-control
   * Build-Depends: dh-python
   * Drop autotools-dev from Build-Depends
   * Drop unused lintian override
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If you work on this bug of sciscipy please use the migrated Git repository on salsa.d.o

[Andreas Tille]

Hi,

as I recently wrote on Debian Science list[1] I'm currently moving
packages from SVN to Git.  Due to this RC bug which I feel unable to
solve I can not upload a package with updated VCS fields.  So please,
if you work on the bug and intend to upload the package use the Git
repository on Salsa[2].
 
Kind regards

   Andreas.
 
[1] https://lists.debian.org/debian-science/2018/01/msg00196.html
[2] https://salsa.debian.org/science-team/sciscipy.git

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If you work on this bug of scilab-celestlab please use the migrated Git repository on salsa.d.o

[Andreas Tille]

Hi,

as I recently wrote on Debian Science list[1] I'm currently moving
packages from SVN to Git.  Due to this RC bug which I feel unable to
solve I can not upload a package with updated VCS fields.  So please,
if you work on the bug and intend to upload the package use the Git
repository on Salsa[2].

Kind regards

   Andreas.
 
[1] https://lists.debian.org/debian-science/2018/01/msg00196.html
[2] https://salsa.debian.org/science-team/scilab-celestlab.git

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Rheolef moved to Git

[Andreas Tille]

Hi Pierre,

as I recently wrote on Debian Science list[1] I'm currently moving
packages from SVN to Git.  With this move I try to modernize the build
system to dh since this makes the package profit from new developments
in packaging easily and also simplifies team maintenance.

In the case of rheolef this switched on build time tests (which were not
done before) and it uncovered some failed tests.  Since I considered it
important to keep the tests in general I deactivated only those tests
that are failing in a patch.

I would expect more failures for other architectures and thus it might
be worth observing the build logs[3].  Please checkout these errors and
discuss the issue with upstream.  I do not have any resources to stick
to this issue in rheolef in the future.

Kind regards

   Andreas.

[1] https://lists.debian.org/debian-science/2018/01/msg00196.html
[2] 
https://salsa.debian.org/science-team/rheolef/blob/master/debian/patches/skip_failing_tests.patch
[3] https://buildd.debian.org/status/package.php?p=rheolef

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