Bug#874803: libcblas-dev and libatlas-base-dev: error when trying to install together
Package: libatlas-base-dev,libcblas-dev Version: libatlas-base-dev/3.10.3-4 Version: libcblas-dev/3.2.1+dfsg-1 Severity: serious User: trei...@debian.org Usertags: edos-file-overwrite Date: 2017-09-09 Architecture: amd64 Distribution: sid Hi, automatic installation tests of packages that share a file and at the same time do not conflict by their package dependency relationships has detected the following problem: Selecting previously unselected package gcc-7-base:amd64. (Reading database ... 10979 files and directories currently installed.) Preparing to unpack .../gcc-7-base_7.2.0-4_amd64.deb ... Unpacking gcc-7-base:amd64 (7.2.0-4) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../libquadmath0_7.2.0-4_amd64.deb ... Unpacking libquadmath0:amd64 (7.2.0-4) ... Selecting previously unselected package libgfortran4:amd64. Preparing to unpack .../libgfortran4_7.2.0-4_amd64.deb ... Unpacking libgfortran4:amd64 (7.2.0-4) ... Selecting previously unselected package libatlas3-base:amd64. Preparing to unpack .../libatlas3-base_3.10.3-4_amd64.deb ... Unpacking libatlas3-base:amd64 (3.10.3-4) ... Selecting previously unselected package libatlas-base-dev:amd64. Preparing to unpack .../libatlas-base-dev_3.10.3-4_amd64.deb ... Unpacking libatlas-base-dev:amd64 (3.10.3-4) ... Selecting previously unselected package libblas-common. Preparing to unpack .../libblas-common_3.7.1-1+b1_amd64.deb ... Unpacking libblas-common (3.7.1-1+b1) ... Selecting previously unselected package libf2c2:amd64. Preparing to unpack .../libf2c2_20130926-2_amd64.deb ... Unpacking libf2c2:amd64 (20130926-2) ... Selecting previously unselected package libcblas3. Preparing to unpack .../libcblas3_3.2.1+dfsg-1_amd64.deb ... Unpacking libcblas3 (3.2.1+dfsg-1) ... dpkg: error processing archive /var/cache/apt/archives/libcblas3_3.2.1+dfsg-1_amd64.deb (--unpack): trying to overwrite '/usr/lib/x86_64-linux-gnu/libcblas.so.3', which is also in package libatlas3-base:amd64 3.10.3-4 Selecting previously unselected package libcblas-dev. Preparing to unpack .../libcblas-dev_3.2.1+dfsg-1_amd64.deb ... Unpacking libcblas-dev (3.2.1+dfsg-1) ... dpkg: error processing archive /var/cache/apt/archives/libcblas-dev_3.2.1+dfsg-1_amd64.deb (--unpack): trying to overwrite '/usr/lib/x86_64-linux-gnu/libcblas.a', which is also in package libatlas-base-dev:amd64 3.10.3-4 dpkg-deb: error: subprocess paste was killed by signal (Broken pipe) Processing triggers for libc-bin (2.24-17) ... Errors were encountered while processing: /var/cache/apt/archives/libcblas3_3.2.1+dfsg-1_amd64.deb /var/cache/apt/archives/libcblas-dev_3.2.1+dfsg-1_amd64.deb E: Sub-process /usr/bin/dpkg returned an error code (1) E: Error calling setupterm: 0 E: cow-shell unlink .ilist: No such file or directory This is a serious bug as it makes installation fail, and violates sections 7.6.1 and 10.1 of the policy. An optimal solution would consist in only one of the packages installing that file, and renaming or removing the file in the other package. Depending on the circumstances you might also consider Replace relations or file diversions. If the conflicting situation cannot be resolved then, as a last resort, the two packages have to declare a mutual Conflict. Please take into account that Replaces, Conflicts and diversions should only be used when packages provide different implementations for the same functionality. Here is a list of files that are known to be shared by both packages (according to the Contents file for sid/amd64, which may be slightly out of sync): /usr/lib/x86_64-linux-gnu/libcblas.a /usr/lib/x86_64-linux-gnu/libcblas.so This bug has been filed against both packages. If you, the maintainers of the two packages in question, have agreed on which of the packages will resolve the problem please reassign the bug to that package. You may then also register in the BTS that the other package is affected by the bug. -Ralf. PS: for more information about the detection of file overwrite errors of this kind see http://qa.debian.org/dose/file-overwrites.html. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#874802: libcblas3 and libatlas3-base: error when trying to install together
Package: libatlas3-base,libcblas3 Version: libatlas3-base/3.10.3-4 Version: libcblas3/3.2.1+dfsg-1 Severity: serious User: trei...@debian.org Usertags: edos-file-overwrite Date: 2017-09-09 Architecture: amd64 Distribution: sid Hi, automatic installation tests of packages that share a file and at the same time do not conflict by their package dependency relationships has detected the following problem: Selecting previously unselected package gcc-7-base:amd64. (Reading database ... 10979 files and directories currently installed.) Preparing to unpack .../gcc-7-base_7.2.0-4_amd64.deb ... Unpacking gcc-7-base:amd64 (7.2.0-4) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../libquadmath0_7.2.0-4_amd64.deb ... Unpacking libquadmath0:amd64 (7.2.0-4) ... Selecting previously unselected package libgfortran4:amd64. Preparing to unpack .../libgfortran4_7.2.0-4_amd64.deb ... Unpacking libgfortran4:amd64 (7.2.0-4) ... Selecting previously unselected package libatlas3-base:amd64. Preparing to unpack .../libatlas3-base_3.10.3-4_amd64.deb ... Unpacking libatlas3-base:amd64 (3.10.3-4) ... Selecting previously unselected package libblas-common. Preparing to unpack .../libblas-common_3.7.1-1+b1_amd64.deb ... Unpacking libblas-common (3.7.1-1+b1) ... Selecting previously unselected package libf2c2:amd64. Preparing to unpack .../libf2c2_20130926-2_amd64.deb ... Unpacking libf2c2:amd64 (20130926-2) ... Selecting previously unselected package libcblas3. Preparing to unpack .../libcblas3_3.2.1+dfsg-1_amd64.deb ... Unpacking libcblas3 (3.2.1+dfsg-1) ... dpkg: error processing archive /var/cache/apt/archives/libcblas3_3.2.1+dfsg-1_amd64.deb (--unpack): trying to overwrite '/usr/lib/x86_64-linux-gnu/libcblas.so.3', which is also in package libatlas3-base:amd64 3.10.3-4 Processing triggers for libc-bin (2.24-17) ... Errors were encountered while processing: /var/cache/apt/archives/libcblas3_3.2.1+dfsg-1_amd64.deb E: Sub-process /usr/bin/dpkg returned an error code (1) This is a serious bug as it makes installation fail, and violates sections 7.6.1 and 10.1 of the policy. An optimal solution would consist in only one of the packages installing that file, and renaming or removing the file in the other package. Depending on the circumstances you might also consider Replace relations or file diversions. If the conflicting situation cannot be resolved then, as a last resort, the two packages have to declare a mutual Conflict. Please take into account that Replaces, Conflicts and diversions should only be used when packages provide different implementations for the same functionality. Here is a list of files that are known to be shared by both packages (according to the Contents file for sid/amd64, which may be slightly out of sync): /usr/lib/x86_64-linux-gnu/libcblas.so.3 This bug has been filed against both packages. If you, the maintainers of the two packages in question, have agreed on which of the packages will resolve the problem please reassign the bug to that package. You may then also register in the BTS that the other package is affected by the bug. -Ralf. PS: for more information about the detection of file overwrite errors of this kind see http://qa.debian.org/dose/file-overwrites.html. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#864004: dune-grid: FTBFS, and cruft package, on hurd-i386
Source: dune-grid Version: 2.5.0-1 User: trei...@debian.org Usertags: edos-uninstallable Hi, dune-grid fails to build on hurd-i386 (unsatisfiable build-dependency on libdune-common-dev), but did build in the past. As a consequence, we now have on hurd-i386 a crufty binary package libdune-grid-2.3.1, which is not installable. In case you decide not to fix the FTBFS, please consider asking for removal of libdune-grid-2.3.1:hurd-i386. Thanks -Ralf. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#826708: gnuplot5-doc and gnuplot-doc: error when trying to install together
Package: gnuplot-doc,gnuplot5-doc Version: gnuplot-doc/4.6.6-3 Version: gnuplot5-doc/5.0.3+dfsg2-2 Severity: serious User: trei...@debian.org Usertags: edos-file-overwrite Date: 2016-06-08 Architecture: amd64 Distribution: sid Hi, automatic installation tests of packages that share a file and at the same time do not conflict by their package dependency relationships has detected the following problem: Selecting previously unselected package gnuplot-doc. (Reading database ... 10960 files and directories currently installed.) Preparing to unpack .../gnuplot-doc_5.0.3+dfsg3-1_all.deb ... Unpacking gnuplot-doc (5.0.3+dfsg3-1) ... Selecting previously unselected package gnuplot5-doc. Preparing to unpack .../gnuplot5-doc_5.0.3+dfsg2-2_all.deb ... Unpacking gnuplot5-doc (5.0.3+dfsg2-2) ... dpkg: error processing archive /var/cache/apt/archives/gnuplot5-doc_5.0.3+dfsg2-2_all.deb (--unpack): trying to overwrite '/usr/share/info/gnuplot5.info.gz', which is also in package gnuplot-doc 5.0.3+dfsg3-1 dpkg-deb: error: subprocess paste was killed by signal (Broken pipe) Processing triggers for install-info (6.1.0.dfsg.1-8) ... Errors were encountered while processing: /var/cache/apt/archives/gnuplot5-doc_5.0.3+dfsg2-2_all.deb E: Sub-process /usr/bin/dpkg returned an error code (1) This is a serious bug as it makes installation fail, and violates sections 7.6.1 and 10.1 of the policy. An optimal solution would consist in only one of the packages installing that file, and renaming or removing the file in the other package. Depending on the circumstances you might also consider Replace relations or file diversions. If the conflicting situation cannot be resolved then, as a last resort, the two packages have to declare a mutual Conflict. Please take into account that Replaces, Conflicts and diversions should only be used when packages provide different implementations for the same functionality. Here is a list of files that are known to be shared by both packages (according to the Contents file for sid/amd64, which may be slightly out of sync): /usr/share/info/gnuplot5.info.gz This bug has been filed against both packages. If you, the maintainers of the two packages in question, have agreed on which of the packages will resolve the problem please reassign the bug to that package. You may then also register in the BTS that the other package is affected by the bug. -Ralf. PS: for more information about the detection of file overwrite errors of this kind see http://qa.debian.org/dose/file-overwrites.html. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#816699: libga-dev and libarmci-mpi-dev: error when trying to install together
Package: libarmci-mpi-dev,libga-dev Version: libarmci-mpi-dev/0.0~git20160222-1 Version: libga-dev/5.4~beta~r10636+dfsg-2 Severity: serious User: trei...@debian.org Usertags: edos-file-overwrite Date: 2016-03-04 Architecture: amd64 Distribution: sid Hi, automatic installation tests of packages that share a file and at the same time do not conflict by their package dependency relationships has detected the following problem: Selecting previously unselected package libarmci-mpi-dev. (Reading database ... 10939 files and directories currently installed.) Preparing to unpack .../libarmci-mpi-dev_0.0~git20160222-1_amd64.deb ... Unpacking libarmci-mpi-dev (0.0~git20160222-1) ... Selecting previously unselected package libga-dev. Preparing to unpack .../libga-dev_5.4~beta~r10636+dfsg-2_amd64.deb ... Unpacking libga-dev (5.4~beta~r10636+dfsg-2) ... dpkg: error processing archive /var/cache/apt/archives/libga-dev_5.4~beta~r10636+dfsg-2_amd64.deb (--unpack): trying to overwrite '/usr/lib/x86_64-linux-gnu/libarmci.a', which is also in package libarmci-mpi-dev 0.0~git20160222-1 dpkg-deb: error: subprocess paste was killed by signal (Broken pipe) Errors were encountered while processing: /var/cache/apt/archives/libga-dev_5.4~beta~r10636+dfsg-2_amd64.deb E: Sub-process /usr/bin/dpkg returned an error code (1) This is a serious bug as it makes installation fail, and violates sections 7.6.1 and 10.1 of the policy. An optimal solution would consist in only one of the packages installing that file, and renaming or removing the file in the other package. Depending on the circumstances you might also consider Replace relations or file diversions. If the conflicting situation cannot be resolved then, as a last resort, the two packages have to declare a mutual Conflict. Please take into account that Replaces, Conflicts and diversions should only be used when packages provide different implementations for the same functionality. Here is a list of files that are known to be shared by both packages (according to the Contents file for sid/amd64, which may be slightly out of sync): /usr/lib/arm-linux-gnueabi/libarmci.a This bug has been filed against both packages. If you, the maintainers of the two packages in question, have agreed on which of the packages will resolve the problem please reassign the bug to that package. You may then also register in the BTS that the other package is affected by the bug. -Ralf. PS: for more information about the detection of file overwrite errors of this kind see http://qa.debian.org/dose/file-overwrites.html. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#812743: libsdformat4-dev and libsdformat3-dev: error when trying to install together
Package: libsdformat3-dev,libsdformat4-dev Version: libsdformat3-dev/3.06.00-3 Version: libsdformat4-dev/4.0.0-1 Severity: serious User: trei...@debian.org Usertags: edos-file-overwrite Date: 2016-01-26 Architecture: amd64 Distribution: sid Hi, automatic installation tests of packages that share a file and at the same time do not conflict by their package dependency relationships has detected the following problem: Extracting templates from packages: 42% Extracting templates from packages: 85% Extracting templates from packages: 100% Selecting previously unselected package libgmp10:amd64. (Reading database ... 10941 files and directories currently installed.) Preparing to unpack .../libgmp10_2%3a6.1.0+dfsg-2_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.0+dfsg-2) ... Selecting previously unselected package libmpfr4:amd64. Preparing to unpack .../libmpfr4_3.1.3-2_amd64.deb ... Unpacking libmpfr4:amd64 (3.1.3-2) ... Selecting previously unselected package libmpc3:amd64. Preparing to unpack .../libmpc3_1.0.3-1_amd64.deb ... Unpacking libmpc3:amd64 (1.0.3-1) ... Selecting previously unselected package gcc-5-base:amd64. Preparing to unpack .../gcc-5-base_5.3.1-7_amd64.deb ... Unpacking gcc-5-base:amd64 (5.3.1-7) ... Processing triggers for libc-bin (2.21-7) ... Setting up gcc-5-base:amd64 (5.3.1-7) ... (Reading database ... 10971 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a5.3.1-7_amd64.deb ... Unpacking libgcc1:amd64 (1:5.3.1-7) over (1:4.8.2-19) ... Processing triggers for libc-bin (2.21-7) ... Setting up libgcc1:amd64 (1:5.3.1-7) ... Processing triggers for libc-bin (2.21-7) ... (Reading database ... 10971 files and directories currently installed.) Preparing to unpack .../libstdc++6_5.3.1-7_amd64.deb ... Unpacking libstdc++6:amd64 (5.3.1-7) over (4.8.2-19) ... Processing triggers for libc-bin (2.21-7) ... Setting up libstdc++6:amd64 (5.3.1-7) ... Processing triggers for libc-bin (2.21-7) ... Selecting previously unselected package libboost-iostreams1.58.0:amd64. (Reading database ... 10985 files and directories currently installed.) Preparing to unpack .../libboost-iostreams1.58.0_1.58.0+dfsg-4.1_amd64.deb ... Unpacking libboost-iostreams1.58.0:amd64 (1.58.0+dfsg-4.1) ... Selecting previously unselected package binutils. Preparing to unpack .../binutils_2.25.90.20160101-2_amd64.deb ... Unpacking binutils (2.25.90.20160101-2) ... Selecting previously unselected package libisl15:amd64. Preparing to unpack .../libisl15_0.16.1-1_amd64.deb ... Unpacking libisl15:amd64 (0.16.1-1) ... Selecting previously unselected package cpp-5. Preparing to unpack .../cpp-5_5.3.1-7_amd64.deb ... Unpacking cpp-5 (5.3.1-7) ... Selecting previously unselected package cpp. Preparing to unpack .../cpp_4%3a5.3.1-1_amd64.deb ... Unpacking cpp (4:5.3.1-1) ... Selecting previously unselected package libcc1-0:amd64. Preparing to unpack .../libcc1-0_5.3.1-7_amd64.deb ... Unpacking libcc1-0:amd64 (5.3.1-7) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../libgomp1_5.3.1-7_amd64.deb ... Unpacking libgomp1:amd64 (5.3.1-7) ... Selecting previously unselected package libitm1:amd64. Preparing to unpack .../libitm1_5.3.1-7_amd64.deb ... Unpacking libitm1:amd64 (5.3.1-7) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../libatomic1_5.3.1-7_amd64.deb ... Unpacking libatomic1:amd64 (5.3.1-7) ... Selecting previously unselected package libasan2:amd64. Preparing to unpack .../libasan2_5.3.1-7_amd64.deb ... Unpacking libasan2:amd64 (5.3.1-7) ... Selecting previously unselected package liblsan0:amd64. Preparing to unpack .../liblsan0_5.3.1-7_amd64.deb ... Unpacking liblsan0:amd64 (5.3.1-7) ... Selecting previously unselected package libtsan0:amd64. Preparing to unpack .../libtsan0_5.3.1-7_amd64.deb ... Unpacking libtsan0:amd64 (5.3.1-7) ... Selecting previously unselected package libubsan0:amd64. Preparing to unpack .../libubsan0_5.3.1-7_amd64.deb ... Unpacking libubsan0:amd64 (5.3.1-7) ... Selecting previously unselected package libcilkrts5:amd64. Preparing to unpack .../libcilkrts5_5.3.1-7_amd64.deb ... Unpacking libcilkrts5:amd64 (5.3.1-7) ... Selecting previously unselected package libmpx0:amd64. Preparing to unpack .../libmpx0_5.3.1-7_amd64.deb ... Unpacking libmpx0:amd64 (5.3.1-7) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../libquadmath0_5.3.1-7_amd64.deb ... Unpacking libquadmath0:amd64 (5.3.1-7) ... Selecting previously unselected package libgcc-5-dev:amd64. Preparing to unpack .../libgcc-5-dev_5.3.1-7_amd64.deb ... Unpacking libgcc-5-dev:amd64 (5.3.1-7) ... Selecting previously unselected package gcc-5. Preparing to unpack .../gcc-5_5.3.1-7_amd64.deb ... Unpacking gcc-5 (5.3.1-7) ... Selecting previously unselected package gcc. Preparing to unpack .../gcc_4%3a5.3.1-1_amd64.deb ... Unpacking gcc (4:5.3.1-1) ... Selecting previously unselected package libc-dev-bin. Preparing to unpack
Bug#806139: testsuite times out
In fact, mona is completely unusable ATM, no way to get any response from it. Raising severity level to grave. -Ralf. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#808004: libdiet-client2.8: not installable on sid
Package: libdiet-client2.8 Version: 2.8.0-1 Severity: serious User: trei...@debian.org Usertags: edos-uninstallable Affects: libdiet-admin2.8, libdiet-sed2.8 Hi, libdiet-client2.8 is not installable on sid on any architecture. This is the case at least since 2015-08-02. The reason for this is that it depends on libstdc++6, but libstdc++6 (5.3.1-3) declares a Breaks relation with libdiet-client2.8 (<= 2.8.0-1+b3). The same holds for: libdiet-admin2.8 (<= 2.8.0-1+b3) libdiet-sed2.8 (<= 2.8.0-1+b3) -Ralf. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#807014: ros-message-runtime and message-runtime: error when trying to install together
Package: message-runtime,ros-message-runtime Version: message-runtime/0.4.12-1 Version: ros-message-runtime/0.4.12-2 Severity: serious User: trei...@debian.org Usertags: edos-file-overwrite Date: 2015-12-04 Architecture: amd64 Distribution: sid Hi, automatic installation tests of packages that share a file and at the same time do not conflict by their package dependency relationships has detected the following problem: Extracting templates from packages: 51% Extracting templates from packages: 100% Selecting previously unselected package libffi6:amd64. (Reading database ... 10929 files and directories currently installed.) Preparing to unpack .../libffi6_3.2.1-3_amd64.deb ... Unpacking libffi6:amd64 (3.2.1-3) ... Selecting previously unselected package libgmp10:amd64. Preparing to unpack .../libgmp10_2%3a6.1.0+dfsg-2_amd64.deb ... Unpacking libgmp10:amd64 (2:6.1.0+dfsg-2) ... Selecting previously unselected package libisl15:amd64. Preparing to unpack .../libisl15_0.15-3_amd64.deb ... Unpacking libisl15:amd64 (0.15-3) ... Selecting previously unselected package libmpfr4:amd64. Preparing to unpack .../libmpfr4_3.1.3-1_amd64.deb ... Unpacking libmpfr4:amd64 (3.1.3-1) ... Selecting previously unselected package libmpc3:amd64. Preparing to unpack .../libmpc3_1.0.3-1_amd64.deb ... Unpacking libmpc3:amd64 (1.0.3-1) ... Selecting previously unselected package gcc-5-base:amd64. Preparing to unpack .../gcc-5-base_5.2.1-27_amd64.deb ... Unpacking gcc-5-base:amd64 (5.2.1-27) ... Processing triggers for libc-bin (2.21-3) ... Setting up gcc-5-base:amd64 (5.2.1-27) ... (Reading database ... 10970 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a5.2.1-27_amd64.deb ... Unpacking libgcc1:amd64 (1:5.2.1-27) over (1:4.8.2-19) ... Processing triggers for libc-bin (2.21-3) ... Setting up libgcc1:amd64 (1:5.2.1-27) ... Processing triggers for libc-bin (2.21-3) ... (Reading database ... 10970 files and directories currently installed.) Preparing to unpack .../libstdc++6_5.2.1-27_amd64.deb ... Unpacking libstdc++6:amd64 (5.2.1-27) over (4.8.2-19) ... Processing triggers for libc-bin (2.21-3) ... Setting up libstdc++6:amd64 (5.2.1-27) ... Processing triggers for libc-bin (2.21-3) ... Selecting previously unselected package binutils. (Reading database ... 10984 files and directories currently installed.) Preparing to unpack .../binutils_2.25.90.20151125-2_amd64.deb ... Unpacking binutils (2.25.90.20151125-2) ... Selecting previously unselected package cpp-5. Preparing to unpack .../cpp-5_5.2.1-27_amd64.deb ... Unpacking cpp-5 (5.2.1-27) ... Selecting previously unselected package cpp. Preparing to unpack .../cpp_4%3a5.2.1-8_amd64.deb ... Unpacking cpp (4:5.2.1-8) ... Selecting previously unselected package libcc1-0:amd64. Preparing to unpack .../libcc1-0_5.2.1-27_amd64.deb ... Unpacking libcc1-0:amd64 (5.2.1-27) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../libgomp1_5.2.1-27_amd64.deb ... Unpacking libgomp1:amd64 (5.2.1-27) ... Selecting previously unselected package libitm1:amd64. Preparing to unpack .../libitm1_5.2.1-27_amd64.deb ... Unpacking libitm1:amd64 (5.2.1-27) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../libatomic1_5.2.1-27_amd64.deb ... Unpacking libatomic1:amd64 (5.2.1-27) ... Selecting previously unselected package libasan2:amd64. Preparing to unpack .../libasan2_5.2.1-27_amd64.deb ... Unpacking libasan2:amd64 (5.2.1-27) ... Selecting previously unselected package liblsan0:amd64. Preparing to unpack .../liblsan0_5.2.1-27_amd64.deb ... Unpacking liblsan0:amd64 (5.2.1-27) ... Selecting previously unselected package libtsan0:amd64. Preparing to unpack .../libtsan0_5.2.1-27_amd64.deb ... Unpacking libtsan0:amd64 (5.2.1-27) ... Selecting previously unselected package libubsan0:amd64. Preparing to unpack .../libubsan0_5.2.1-27_amd64.deb ... Unpacking libubsan0:amd64 (5.2.1-27) ... Selecting previously unselected package libcilkrts5:amd64. Preparing to unpack .../libcilkrts5_5.2.1-27_amd64.deb ... Unpacking libcilkrts5:amd64 (5.2.1-27) ... Selecting previously unselected package libmpx0:amd64. Preparing to unpack .../libmpx0_5.2.1-27_amd64.deb ... Unpacking libmpx0:amd64 (5.2.1-27) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../libquadmath0_5.2.1-27_amd64.deb ... Unpacking libquadmath0:amd64 (5.2.1-27) ... Selecting previously unselected package libgcc-5-dev:amd64. Preparing to unpack .../libgcc-5-dev_5.2.1-27_amd64.deb ... Unpacking libgcc-5-dev:amd64 (5.2.1-27) ... Selecting previously unselected package gcc-5. Preparing to unpack .../gcc-5_5.2.1-27_amd64.deb ... Unpacking gcc-5 (5.2.1-27) ... Selecting previously unselected package gcc. Preparing to unpack .../gcc_4%3a5.2.1-8_amd64.deb ... Unpacking gcc (4:5.2.1-8) ... Selecting previously unselected package libc-dev-bin. Preparing to unpack .../libc-dev-bin_2.21-3_amd64.deb ... Unpacking libc-dev-bin (2.21-3) ...
Bug#800526: reassigning bug to clasp
Hello, I am reassigning this bug to clasp. See this thread on the potassco-users mailing list: http://sourceforge.net/p/potassco/mailman/potassco-users/thread/1954801.MC6ALO8tj0%40aix/#msg34512643 -Ralf -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#766584: fenics: Fenics to be removed with recent dist-upgrade
Hello, this seems to be due to the fact that fenics depends on libdolfin-dev (= 1.5.0), which currently only exists in experimental. The long-term solution would then be to upload libdolfin-dev 1.5.0-x to sid. A quick fix for a user should be to install libdolfin-dev 1.5.0-1 from experimental. -Ralf. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#772410: sclilab : uploading the proposed patch fixing bashism ?
Hi Sylvestre, I can upload the proposed patch for #772410 (scilab: bashism in /bin/sh script) if you don't have the time. However I do not know what to do about #749833. Just let me know. Cheers -Ralf. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#760444: libgyoto2 and libgyoto1: error when trying to install together
Package: libgyoto1,libgyoto2 Version: libgyoto1/0.1.0-2 Version: libgyoto2/0.2.1-1 Severity: serious User: trei...@debian.org Usertags: edos-file-overwrite Date: 2014-09-04 Architecture: amd64 Distribution: sid Hi, automatic installation tests of packages that share a file and at the same time do not conflict by their package dependency relationships has detected the following problem: Selecting previously unselected package gcc-4.9-base:amd64. (Reading database ... 10869 files and directories currently installed.) Preparing to unpack .../gcc-4.9-base_4.9.1-12_amd64.deb ... Unpacking gcc-4.9-base:amd64 (4.9.1-12) ... Setting up gcc-4.9-base:amd64 (4.9.1-12) ... (Reading database ... 10876 files and directories currently installed.) Preparing to unpack .../libstdc++6_4.9.1-12_amd64.deb ... Unpacking libstdc++6:amd64 (4.9.1-12) over (4.8.2-19) ... Setting up libstdc++6:amd64 (4.9.1-12) ... Processing triggers for libc-bin (2.19-10) ... Selecting previously unselected package libcfitsio3:amd64. (Reading database ... 10889 files and directories currently installed.) Preparing to unpack .../libcfitsio3_3.340-3_amd64.deb ... Unpacking libcfitsio3:amd64 (3.340-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.1.0-6_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6) ... Selecting previously unselected package libicu52:amd64. Preparing to unpack .../libicu52_52.1-5_amd64.deb ... Unpacking libicu52:amd64 (52.1-5) ... Selecting previously unselected package libudunits2-0:amd64. Preparing to unpack .../libudunits2-0_2.2.14-1_amd64.deb ... Unpacking libudunits2-0:amd64 (2.2.14-1) ... Selecting previously unselected package libxerces-c3.1:amd64. Preparing to unpack .../libxerces-c3.1_3.1.1-5_amd64.deb ... Unpacking libxerces-c3.1:amd64 (3.1.1-5) ... Selecting previously unselected package libgyoto1. Preparing to unpack .../libgyoto1_0.1.0-2_amd64.deb ... Unpacking libgyoto1 (0.1.0-2) ... Selecting previously unselected package libgyoto2. Preparing to unpack .../libgyoto2_0.2.1-1_amd64.deb ... Unpacking libgyoto2 (0.2.1-1) ... dpkg: error processing archive /var/cache/apt/archives/libgyoto2_0.2.1-1_amd64.deb (--unpack): trying to overwrite '/usr/share/lintian/overrides/libgyoto1', which is also in package libgyoto1 0.1.0-2 Processing triggers for install-info (5.2.0.dfsg.1-4) ... Errors were encountered while processing: /var/cache/apt/archives/libgyoto2_0.2.1-1_amd64.deb E: Sub-process /usr/bin/dpkg returned an error code (1) This is a serious bug as it makes installation fail, and violates sections 7.6.1 and 10.1 of the policy. An optimal solution would consist in only one of the packages installing that file, and renaming or removing the file in the other package. Depending on the circumstances you might also consider Replace relations or file diversions. If the conflicting situation cannot be resolved then, as a last resort, the two packages have to declare a mutual Conflict. Please take into account that Replaces, Conflicts and diversions should only be used when packages provide different implementations for the same functionality. Here is a list of files that are known to be shared by both packages (according to the Contents file for sid/amd64, which may be slightly out of sync): /usr/share/lintian/overrides/libgyoto1 This bug has been filed against both packages. If you, the maintainers of the two packages in question, have agreed on which of the packages will resolve the problem please reassign the bug to that package. You may then also register in the BTS that the other package is affected by the bug. -Ralf. PS: for more information about the detection of file overwrite errors of this kind see http://edos.debian.net/file-overwrites/. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#722806: mona link with -L/usr/lib
Hi, This package has one or more -L/usr/lib in its build system, which will make it ftbfs if there is libraries under /usr/lib, while is not the default architecture, mips* for example. The package (version 1.4-13-3) builds fine on mips [1], so I cannot see a bug here. I have today uploaded a new upstream version of the package (1.4-15-1). If you still think there is a problem you will have to point me to an actual build failure, or a violation of policy. Otherwise I will close this bug. BTW, grep 'usr/lib' */makefile* */makefile* on the mona source tree (version 1.4-15) gives nothing. Cheers -Ralf. [1] https://buildd.debian.org/status/fetch.php?pkg=monaarch=mipsver=1.4-13-3stamp=1305156061 -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#755727: python-dolfin: not installable in sid
Package: python-dolfin Version: 1.3.0+dfsg-2+b1 Severity: grave User: trei...@debian.org Usertags: edos-uninstallable Hi, python-dolfin is not installable in sid on any architecture. This is the case since 2014-05-12. The reason is that it depends both on python-ffc and python-ufc, which are in conflict. -Ralf. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#755728: fenics: not installable in sid
Package: fenics Version: 1:1.3.0.1 Severity: grave User: trei...@debian.org Usertags: edos-uninstallable Hi, fenics is not installable in sid on any architecture. This is the case since 2014-05-12. The reason is that fenics depends both on python-ffc and python-ufc, which are in conflict. -Ralf. -- debian-science-maintainers mailing list debian-science-maintainers@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-science-maintainers
Bug#749461: nmu: dolfin_1.3.0+dfsg-2
Package: release.debian.org
Severity: normal
User: release.debian@packages.debian.org
Usertags: binnmu
Hi, python-dolfin is currently not installable in sid since it depends
on swig2.0 ( 2.0.12~), and we have swig2.0 version 2.0.12-1 in sid.
This dependency seems to be generated by this fragment of debian/control:
Package: python-dolfin
Depends: ${swig:Depends},
nmu dolfin_1.3.0+dfsg-2 . ALL . -m rebuild against swig2.0 2.0.12-1
-- System Information:
Debian Release: jessie/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 3.12-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.utf8, LC_CTYPE=en_US.utf8 (charmap=UTF-8) (ignored: LC_ALL
set to en_US.utf8)
Shell: /bin/sh linked to /bin/dash
--
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Bug#737190: vtk6 and tcl-vtk: error when trying to install together
Package: tcl-vtk,vtk6 Version: tcl-vtk/5.8.0-15 Version: vtk6/6.0.0-1 Severity: serious User: trei...@debian.org Usertags: edos-file-overwrite Date: 2014-01-31 Architecture: amd64 Distribution: sid Hi, automatic installation tests of packages that share a file and at the same time do not conflict by their package dependency relationships has detected the following problem: Extracting templates from packages: 21% Extracting templates from packages: 42% Extracting templates from packages: 64% Extracting templates from packages: 85% Extracting templates from packages: 100% Preconfiguring packages ... Selecting previously unselected package libkeyutils1:amd64. (Reading database ... 10921 files and directories currently installed.) Preparing to unpack .../libkeyutils1_1.5.6-1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.6-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../libkrb5support0_1.12+dfsg-2_amd64.deb ... Unpacking libkrb5support0:amd64 (1.12+dfsg-2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../libk5crypto3_1.12+dfsg-2_amd64.deb ... Unpacking libk5crypto3:amd64 (1.12+dfsg-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../libkrb5-3_1.12+dfsg-2_amd64.deb ... Unpacking libkrb5-3:amd64 (1.12+dfsg-2) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../libgssapi-krb5-2_1.12+dfsg-2_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.12+dfsg-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../libsasl2-modules-db_2.1.25.dfsg1-17_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.25.dfsg1-17) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../libsasl2-2_2.1.25.dfsg1-17_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.25.dfsg1-17) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../libldap-2.4-2_2.4.31-1+nmu2+b1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.31-1+nmu2+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.1+dfsg1-3_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-3) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../x11-common_1%3a7.7+5_all.deb ... Unpacking x11-common (1:7.7+5) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../libice6_2%3a1.0.8-2_amd64.deb ... Unpacking libice6:amd64 (2:1.0.8-2) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../libsm6_2%3a1.2.1-2_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.1-2) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../libxdmcp6_1%3a1.1.1-1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.1-1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../libxcb1_1.10-2_amd64.deb ... Unpacking libxcb1:amd64 (1.10-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../libx11-data_2%3a1.6.2-1_all.deb ... Unpacking libx11-data (2:1.6.2-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../libx11-6_2%3a1.6.2-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.2-1) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../libxt6_1%3a1.1.4-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.4-1) ... Selecting previously unselected package libaudio2:amd64. Preparing to unpack .../libaudio2_1.9.4-1_amd64.deb ... Unpacking libaudio2:amd64 (1.9.4-1) ... Selecting previously unselected package libavutil52:amd64. Preparing to unpack .../libavutil52_6%3a9.10-2_amd64.deb ... Unpacking libavutil52:amd64 (6:9.10-2) ... Selecting previously unselected package libgsm1:amd64. Preparing to unpack .../libgsm1_1.0.13-4_amd64.deb ... Unpacking libgsm1:amd64 (1.0.13-4) ... Selecting previously unselected package libmp3lame0:amd64. Preparing to unpack .../libmp3lame0_3.99.5+repack1-3_amd64.deb ... Unpacking libmp3lame0:amd64 (3.99.5+repack1-3) ... Selecting previously unselected package libopenjpeg2:amd64. Preparing to unpack .../libopenjpeg2_1.3+dfsg-4.7+b1_amd64.deb ... Unpacking libopenjpeg2:amd64 (1.3+dfsg-4.7+b1) ... Selecting previously unselected package libopus0:amd64. Preparing to unpack .../libopus0_1.1-1_amd64.deb ... Unpacking libopus0:amd64 (1.1-1) ... Selecting previously unselected package liborc-0.4-0:amd64. Preparing to unpack .../liborc-0.4-0_1%3a0.4.18-1_amd64.deb ... Unpacking liborc-0.4-0:amd64 (1:0.4.18-1) ... Selecting previously unselected package libschroedinger-1.0-0:amd64. Preparing to unpack .../libschroedinger-1.0-0_1.0.11-2_amd64.deb ... Unpacking libschroedinger-1.0-0:amd64 (1.0.11-2) ... Selecting previously unselected package libspeex1:amd64.
Bug#737189: libvtk6-java and libvtk-java: error when trying to install together
Package: libvtk-java,libvtk6-java Version: libvtk-java/5.8.0-15 Version: libvtk6-java/6.0.0-1 Severity: serious User: trei...@debian.org Usertags: edos-file-overwrite Date: 2014-01-31 Architecture: amd64 Distribution: sid Hi, automatic installation tests of packages that share a file and at the same time do not conflict by their package dependency relationships has detected the following problem: Extracting templates from packages: 33% Extracting templates from packages: 67% Extracting templates from packages: 100% Preconfiguring packages ... Selecting previously unselected package libkeyutils1:amd64. (Reading database ... 10921 files and directories currently installed.) Preparing to unpack .../libkeyutils1_1.5.6-1_amd64.deb ... Unpacking libkeyutils1:amd64 (1.5.6-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../libkrb5support0_1.12+dfsg-2_amd64.deb ... Unpacking libkrb5support0:amd64 (1.12+dfsg-2) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../libk5crypto3_1.12+dfsg-2_amd64.deb ... Unpacking libk5crypto3:amd64 (1.12+dfsg-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../libkrb5-3_1.12+dfsg-2_amd64.deb ... Unpacking libkrb5-3:amd64 (1.12+dfsg-2) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../libgssapi-krb5-2_1.12+dfsg-2_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.12+dfsg-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../libsasl2-modules-db_2.1.25.dfsg1-17_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.25.dfsg1-17) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../libsasl2-2_2.1.25.dfsg1-17_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.25.dfsg1-17) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../libldap-2.4-2_2.4.31-1+nmu2+b1_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.31-1+nmu2+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.1+dfsg1-3_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-3) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../libxau6_1%3a1.0.8-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../x11-common_1%3a7.7+5_all.deb ... Unpacking x11-common (1:7.7+5) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../libice6_2%3a1.0.8-2_amd64.deb ... Unpacking libice6:amd64 (2:1.0.8-2) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../libsm6_2%3a1.2.1-2_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.1-2) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../libxdmcp6_1%3a1.1.1-1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.1-1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../libxcb1_1.10-2_amd64.deb ... Unpacking libxcb1:amd64 (1.10-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../libx11-data_2%3a1.6.2-1_all.deb ... Unpacking libx11-data (2:1.6.2-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../libx11-6_2%3a1.6.2-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.2-1) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../libxt6_1%3a1.1.4-1_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.4-1) ... Selecting previously unselected package libaudio2:amd64. Preparing to unpack .../libaudio2_1.9.4-1_amd64.deb ... Unpacking libaudio2:amd64 (1.9.4-1) ... Selecting previously unselected package libavutil52:amd64. Preparing to unpack .../libavutil52_6%3a9.10-2_amd64.deb ... Unpacking libavutil52:amd64 (6:9.10-2) ... Selecting previously unselected package libgsm1:amd64. Preparing to unpack .../libgsm1_1.0.13-4_amd64.deb ... Unpacking libgsm1:amd64 (1.0.13-4) ... Selecting previously unselected package libmp3lame0:amd64. Preparing to unpack .../libmp3lame0_3.99.5+repack1-3_amd64.deb ... Unpacking libmp3lame0:amd64 (3.99.5+repack1-3) ... Selecting previously unselected package libopenjpeg2:amd64. Preparing to unpack .../libopenjpeg2_1.3+dfsg-4.7+b1_amd64.deb ... Unpacking libopenjpeg2:amd64 (1.3+dfsg-4.7+b1) ... Selecting previously unselected package libopus0:amd64. Preparing to unpack .../libopus0_1.1-1_amd64.deb ... Unpacking libopus0:amd64 (1.1-1) ... Selecting previously unselected package liborc-0.4-0:amd64. Preparing to unpack .../liborc-0.4-0_1%3a0.4.18-1_amd64.deb ... Unpacking liborc-0.4-0:amd64 (1:0.4.18-1) ... Selecting previously unselected package libschroedinger-1.0-0:amd64. Preparing to unpack .../libschroedinger-1.0-0_1.0.11-2_amd64.deb ... Unpacking libschroedinger-1.0-0:amd64 (1.0.11-2) ... Selecting previously unselected package libspeex1:amd64. Preparing to unpack .../libspeex1_1.2~rc1.1-1_amd64.deb ...
