Bug#780379: Unofficial branding?
Now Palemoon project provided an option to brand binary as "New Moon", that won't influenced by their strick branding policy. Is it possible to ship a newmoon branded browser in Debian?
Bug#961693: ITP: r-cran-gmp -- Multiple Precision Arithmetic
Package: wnpp Severity: wishlist Owner: Rodrigo Carvalho * Package name: r-cran-gmp Version : 0.5-14 Upstream Author : Antoine Lucas, Immanuel Scholz, Rainer Boehme, Sylvain Jasson, Martin Maechler * URL : https://cran.r-project.org/package=gmp * License : GPL-2 | GPL-3 Programming Lang: R and C++ Description : Multiple Precision Arithmetic Multiple Precision Arithmetic (big integers and rationals, prime number tests, matrix computation), "arithmetic without limitations" using the C library GMP (GNU Multiple Precision Arithmetic). It will be maintained by R Packages Team
Bug#933071: RFS: ibus-keymagic/1.4-1~exp1 [ITP] -- keymagic engine for IBus
Dear mentors, I am looking for a sponsor for my package "ibus-keymagic" * Package name: ibus-keymagic Version : 1.4-1~exp1 Upstream Author : kokoye2007 * URL : https://keymagic.net * License : GPL-2.0+ * Vcs : https://salsa.debian.orgr/kokoye2007-guest/ibus-keymagic Section : utils It builds those binary packages: ibus-keymagic - keymagic engine for IBus ibus-keymagic-ayar-phonetic - ibus keymagic ayar-phonetic; ibus-keymagic-beolssalba - ibus keymagic beolssalba; ibus-keymagic-cessalba - ibus keymagic cessalba; ibus-keymagic-ddeolssalba - ibus keymagic ddeolssalba; ibus-keymagic-gugeolssalba - ibus keymagic gugeolssalba; ibus-keymagic-khmer-nida - ibus keymagic khmer-nida; ibus-keymagic-loringian-miu - ibus keymagic loringian-miu; ibus-keymagic-malayalam-inscript - ibus keymagic malayalam-inscript; ibus-keymagic-malayalam-mozhi - ibus keymagic malayalam-mozhi; ibus-keymagic-meolssalba - ibus keymagic meolssalba; ibus-keymagic-mon-anonta - ibus keymagic mon-anonta; ibus-keymagic-monbur - ibus keymagic monbur; ibus-keymagic-mon - ibus keymagic mon; ibus-keymagic-myanmar3 - ibus keymagic Myanmar3; ibus-keymagic-myanmar3x - ibus keymagic Myanmar3x; ibus-keymagic-myansan - ibus keymagic myansan; ibus-keymagic-mywin - ibus keymagic mywin; ibus-keymagic-ou-khamti - ibus keymagic ou-khamti; ibus-keymagic-ou-mon - ibus keymagic ou-mon; ibus-keymagic-ou-myanmar - ibus keymagic ou-Myanmar; ibus-keymagic-ou-palaung - ibus keymagic ou-palaung; ibus-keymagic-ou-pao - ibus keymagic ou-pao; ibus-keymagic-ou-shan - ibus keymagic ou-shan; ibus-keymagic-ou-taile - ibus keymagic ou-taile; ibus-keymagic-ou-taitham - ibus keymagic ou-taitham; ibus-keymagic-panglongshan - ibus keymagic panglongshan; ibus-keymagic-paoh - ibus keymagic paoh; ibus-keymagic-parabaik - ibus keymagic parabaik; ibus-keymagic-sunssalba - ibus keymagic sunssalba; ibus-keymagic-unimon - ibus keymagic unimon; ibus-keymagic-yunghkio - ibus keymagic yunghkio; ibus-keymagic-zawgyi - ibus keymagic zawgyi; ibus-keymagic-zawgyinonsmart - ibus keymagic zawgyinonsmart; ibus-keymagic-zawgyitai - ibus keymagic zawgyitai; ibus-keymagic-zawgyiunicode - ibus keymagic zawgyiunicode; ibus-keymagic-zgunicode - ibus keymagic zgunicode; ibus-keymagic-pyidaungsu - ibus keymagic pyidaungsu; To access further information about this package, please visit the following URL: https://mentors.debian.net/package/ibus-keymagic Alternatively, one can download the package with dget using this command: dget -x https://mentors.debian.net/debian/pool/main/i/ibus-keymagic/ibus-keymagic_1.4-1~exp1.dsc Changes since the last upload: * fix gpg key and uscan watch file. * lintian check is clean. * Closes: #933071. Regards, -- kokoye2007 -- with regards *Ko Ko Ye`* +95 97989 22022 +95 94500 22022 +95 9731 47907 kokoye2...@gmail.com kokoye2...@ubuntu.com skype: kokoye2007 jitsi: kokoye2007 http://ubuntu-mm.net http://wiki.ubuntu.com/kokoye2007 http://wiki.ubuntu.com/MyanmarTeam http://loco.ubuntu.com/teams/ubuntu-mm
Bug#933071: update
we change debhelper-compact 13 repo github to salsa debian/rules for bullseye rules update metadata who can test and sponsor for me. https://mentors.debian.net/package/ibus-keymagic https://mentors.debian.net/debian/pool/main/i/ibus-keymagic/ibus-keymagic_1.4-1~exp1.dsc -- with regards *Ko Ko Ye`* +95 97989 22022 +95 94500 22022 +95 9731 47907 kokoye2...@gmail.com kokoye2...@ubuntu.com skype: kokoye2007 jitsi: kokoye2007 http://ubuntu-mm.net http://wiki.ubuntu.com/kokoye2007 http://wiki.ubuntu.com/MyanmarTeam http://loco.ubuntu.com/teams/ubuntu-mm
Bug#961635: uploaded package
Uploaded the package to mentors as requested: https://mentors.debian.net/package/dragengine -- Mit freundlichen Grüssen Plüss Roland Game Development and Game Engine Technologies https://dragondreams.ch signature.asc Description: OpenPGP digital signature
Processed: owner 959831
Processing commands for cont...@bugs.debian.org: > owner 959831 ! Bug #959831 [wnpp] RFP: google-auto-common-java -- Set of common utilities to help ease use of the annotation processing environment Owner recorded as Olek Wojnar . > retitle 959831 ITP: google-auto-common-java -- Set of common utilities to > help ease use of the annotation processing environment Bug #959831 [wnpp] RFP: google-auto-common-java -- Set of common utilities to help ease use of the annotation processing environment Changed Bug title to 'ITP: google-auto-common-java -- Set of common utilities to help ease use of the annotation processing environment' from 'RFP: google-auto-common-java -- Set of common utilities to help ease use of the annotation processing environment'. > thanks Stopping processing here. Please contact me if you need assistance. -- 959831: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=959831 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Processed: owner 960989
Processing commands for cont...@bugs.debian.org: > retitle 960989 ITP: google-auto-value-java -- Generated immutable value > classes for Java 7+ Bug #960989 [wnpp] RFP: google-auto-value-java -- Generated immutable value classes for Java 7+ Changed Bug title to 'ITP: google-auto-value-java -- Generated immutable value classes for Java 7+' from 'RFP: google-auto-value-java -- Generated immutable value classes for Java 7+'. > thanks Stopping processing here. Please contact me if you need assistance. -- 960989: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=960989 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Processed: owner 960989
Processing commands for cont...@bugs.debian.org: > owner 960989 ! Bug #960989 [wnpp] RFP: google-auto-value-java -- Generated immutable value classes for Java 7+ Owner recorded as Olek Wojnar . > thanks Stopping processing here. Please contact me if you need assistance. -- 960989: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=960989 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Processed: RFP: google-auto-value-java -- Generated immutable value classes for Java 7+
Processing commands for cont...@bugs.debian.org: > noowner 960989 Bug #960989 [wnpp] RFP: google-auto-value-java -- Generated immutable value classes for Java 7+ Removed annotation that Bug was owned by Olek Wojnar . > End of message, stopping processing here. Please contact me if you need assistance. -- 960989: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=960989 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Processed: block 958539 with 960989
Processing commands for cont...@bugs.debian.org: > block 958539 with 960989 Bug #958539 [libtruth-java] libtruth-java: Please update libtruth-java 958539 was not blocked by any bugs. 958539 was blocking: 782654 958444 958537 959835 960984 Added blocking bug(s) of 958539: 960989 > thanks Stopping processing here. Please contact me if you need assistance. -- 958539: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=958539 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Processed: block 958539 with 959835
Processing commands for cont...@bugs.debian.org: > block 958539 with 959835 Bug #958539 [libtruth-java] libtruth-java: Please update libtruth-java 958539 was blocked by: 960989 958539 was blocking: 782654 958444 958537 959835 960984 Added blocking bug(s) of 958539: 959835 and 958537 > thanks Stopping processing here. Please contact me if you need assistance. -- 958539: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=958539 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Processed: owner 960989
Processing commands for cont...@bugs.debian.org: > owner 960989 ! Bug #960989 [wnpp] RFP: google-auto-value-java -- Generated immutable value classes for Java 7+ Owner recorded as Olek Wojnar . > thanks Stopping processing here. Please contact me if you need assistance. -- 960989: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=960989 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#961685: ITP: python-aiohttp-proxy -- full-featured proxy connector for aiohttp
Package: wnpp Severity: wishlist Owner: Martin * Package name: python-aiohttp-proxy Version : 0.1.1 Upstream Author : Skactor * URL : https://github.com/Skactor/aiohttp-proxy * License : Apache-2.0 Programming Lang: Python Description : full-featured proxy connector for aiohttp This library provides a SOCKS proxy connector for aiohttp. HTTP, HTTPS, SOCKS4(a) and SOCKS5(h) proxies are supported.
Processed: reassign 955597 to wnpp, retitle 955597 to RFP: obs-xdg-portal -- wayland plugin for obs-studio
Processing commands for cont...@bugs.debian.org: > reassign 955597 wnpp Bug #955597 [obs-plugins] obs-plugins: [Whishlist] Please provide obs-xdg-portal as a plugin Bug reassigned from package 'obs-plugins' to 'wnpp'. No longer marked as found in versions obs-studio/25.0.3+dfsg1-2. Ignoring request to alter fixed versions of bug #955597 to the same values previously set > retitle 955597 RFP: obs-xdg-portal -- wayland plugin for obs-studio Bug #955597 [wnpp] obs-plugins: [Whishlist] Please provide obs-xdg-portal as a plugin Changed Bug title to 'RFP: obs-xdg-portal -- wayland plugin for obs-studio' from 'obs-plugins: [Whishlist] Please provide obs-xdg-portal as a plugin'. > thanks Stopping processing here. Please contact me if you need assistance. -- 955597: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=955597 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Processed: your mail
Processing commands for cont...@bugs.debian.org: > block 961677 by 961174 Bug #961677 [wnpp] ITP: libstatistics-pca-perl -- perl module for principal component analysis (PCA) 961677 was not blocked by any bugs. 961677 was not blocking any bugs. Added blocking bug(s) of 961677: 961174 > block 961677 by 961619 Bug #961677 [wnpp] ITP: libstatistics-pca-perl -- perl module for principal component analysis (PCA) 961677 was blocked by: 961174 961677 was not blocking any bugs. Added blocking bug(s) of 961677: 961619 > thanks Stopping processing here. Please contact me if you need assistance. -- 961677: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961677 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#961677: ITP: libstatistics-pca-perl -- perl module for principal component analysis (PCA)
Package: wnpp Owner: Etienne Mollier Severity: wishlist X-Debbugs-CC: debian-de...@lists.debian.org, debian-p...@lists.debian.org, debian-...@lists.debian.org * Package name: libstatistics-pca-perl Version : 0.0.1 Upstream Author : Daniel S. T. Hughes * URL : https://metacpan.org/release/Statistics-PCA * License : Artistic or GPL-1+ Programming Lang: Perl Description : perl module for principal component analysis (PCA) Statistics::PCA provides functions for principal component analysis (PCA). PCA transforms higher-dimensional data consisting of a number of possibly correlated variables into a smaller number of uncorrelated variables termed principal components (PCs). The higher the ranking of the PCs the greater the amount of variability that the PC accounts for. This PCA procedure involves the calculation of the eigenvalue decomposition from a data covariance matrix after mean centering the data. See https://en.wikipedia.org/wiki/Principal_component_analysis The package will be maintained under the umbrella of the Debian Perl Group. -- Generated with the help of dpt-gen-itp(1) from pkg-perl-tools. Statistics::PCA will allow the command prinseq-graphs, from the package prinseq-lite, to draw PCA graphs, in addition to the variety of diagrams already available. It will thus become a dependency of prinseq-lite. The source code of of the package is available on Salsa: https://salsa.debian.org/perl-team/modules/packages/libstatistics-pca-perl Kind Regards, -- Étienne Mollier Fingerprint: 5ab1 4edf 63bb ccff 8b54 2fa9 59da 56fe fff3 882d Help find cures against the Covid-19 ! Give CPU cycles: * Rosetta@home: https://boinc.bakerlab.org/rosetta/ * Folding@home: https://foldingathome.org/
Bug#959838: Can you help? (ITP: opencensus-java -- Stats collection and distributed tracing framework)
Andreas Tille writes:
> Hi Felix,
hello Andreas,
> since you recently provided some help with another Java package: This
> one is a predependency for bazel which would be really great to have
> torch (the machine learning framework) which in turn is needed by lots
> of COVID-19 relevant packages. So if you have a clue how to build this
> it would be another interesting step forward.
>
> Kind regards
>
> Andreas.
>
> PS: Feel free to answer on list
>
> https://lists.debian.org/debian-java/2020/05/msg00019.html
>
>
> I've started packaging in
>
>https://salsa.debian.org/java-team/opencensus-java
>
> to support bazel packaging. Unfortunately I have no idea how to fix all
> the (Build-)Depends of the gradle build. I was following a hint given
> on debian-java list to find out some dependency relations via
>
>gradle build --info
Wow, what a huge project (and, as usual in Java, with a huge number of
dependencies)...
There are toplevel dependencies (/build.gradle), which are "only" gradle
plugins, so IMHO some of these are candidates for patching out:
classpath 'ru.vyarus:gradle-animalsniffer-plugin:1.4.6'
classpath("org.springframework.boot:spring-boot-gradle-plugin:2.0.5.RELEASE")
classpath 'net.ltgt.gradle:gradle-errorprone-plugin:0.0.16'
classpath "net.ltgt.gradle:gradle-apt-plugin:0.18"
classpath 'com.github.ben-manes:gradle-versions-plugin:0.20.0'
classpath
"gradle.plugin.com.github.sherter.google-java-format:google-java-format-gradle-plugin:0.8"
classpath "me.champeau.gradle:jmh-gradle-plugin:0.4.8"
classpath "gradle.plugin.io.morethan.jmhreport:gradle-jmh-report:0.9.0"
Then there are ~50 dependencies in the 'libraries' map (most probably
all referenced in subdirectory build.gradle's, like "compile
libraries.grpc_context" in /api/build.gradle):
libraries = [
appengine_api:
"com.google.appengine:appengine-api-1.0-sdk:${appengineVersion}",
aspectj: "org.aspectj:aspectjrt:${aspectjVersion}",
auto_value:
"com.google.auto.value:auto-value:${autoValueVersion}",
auto_service: 'com.google.auto.service:auto-service:1.0-rc3',
byte_buddy: 'net.bytebuddy:byte-buddy:1.8.22',
config: 'com.typesafe:config:1.2.1',
disruptor: 'com.lmax:disruptor:3.4.2',
errorprone:
"com.google.errorprone:error_prone_annotations:${errorProneVersion}",
findbugs_annotations:
"com.google.code.findbugs:annotations:${findBugsAnnotationsVersion}",
google_auth:
"com.google.auth:google-auth-library-credentials:${googleAuthVersion}",
google_cloud_logging:
"com.google.cloud:google-cloud-logging:${googleCloudGaVersion}",
google_cloud_trace:
"com.google.cloud:google-cloud-trace:${googleCloudBetaVersion}",
log4j2: "org.apache.logging.log4j:log4j-core:${log4j2Version}",
zipkin_reporter:
"io.zipkin.reporter2:zipkin-reporter:${zipkinReporterVersion}",
zipkin_urlconnection:
"io.zipkin.reporter2:zipkin-sender-urlconnection:${zipkinReporterVersion}",
jaeger_reporter:
"io.jaegertracing:jaeger-client:${jaegerReporterVersion}",
google_cloud_monitoring:
"com.google.cloud:google-cloud-monitoring:${googleCloudGaVersion}",
grpc_auth: "io.grpc:grpc-auth:${grpcVersion}",
grpc_context: "io.grpc:grpc-context:${grpcVersion}",
grpc_core: "io.grpc:grpc-core:${grpcVersion}",
grpc_netty: "io.grpc:grpc-netty:${grpcVersion}",
grpc_netty_shaded: "io.grpc:grpc-netty-shaded:${grpcVersion}",
grpc_stub: "io.grpc:grpc-stub:${grpcVersion}",
guava: "com.google.guava:guava:${guavaVersion}",
jsr305:
"com.google.code.findbugs:jsr305:${findBugsJsr305Version}",
signalfx_java:
"com.signalfx.public:signalfx-java:${signalfxVersion}",
spring_aspects:
"org.springframework:spring-aspects:${springVersion}",
spring_boot_starter_web:
"org.springframework.boot:spring-boot-starter-web:${springBootVersion}",
spring_boot_starter_web2:
"org.springframework.boot:spring-boot-starter-web:${springBoot2Version}",
spring_cloud_build:
"org.springframework.cloud:spring-cloud-build:${springCloudVersion}",
spring_cloud_starter_sleuth:
"org.springframework.cloud:spring-cloud-starter-sleuth:${springCloudVersion}",
spring_context:
"org.springframework:spring-context:${springVersion}",
spring_context_support:
"org.springframework:spring-context-support:${springVersion}",
prometheus_simpleclient:
"io.prometheus:simpleclient:${prometheusVersion}",
protobuf:
"com.google.protobuf:protobuf-java:${protobufVersion}",
opencensus_proto:
"
Bug#961669: ITP: gftl-shared -- Common gFTL containers for Fortran intrinsic types
Hi Ole Definitely willing to help. Best regards Alastair On 27/05/2020 16:45, Ole Streicher wrote: > Package: wnpp > Severity: wishlist > Owner: Ole Streicher > X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org > Control: block 961667 by -1 > Control: block 961668 by -1 > > * Package name: gftl-shared > Version : 0.9.5 > Upstream Author : Tom Clune > * URL : https://github.com/Goddard-Fortran-Ecosystem/ > * License : Apache > Language: Fortran 90 > Description : Common gFTL containers for Fortran intrinsic types > > This is a dependency of pfunit. The package will be maintained in > the DebianScience Team, the repository is > > https://salsa.debian.org/science-team/gftl-shared > > This is Fortran 90, where I am quite unexperienced. I'd appreciate if > someone could have a look on how to organize the package structure > (modules? libs?) and give me hints. > > Best regards > > Ole > -- Alastair McKinstry, , , https://diaspora.sceal.ie/u/amckinstry Misentropy: doubting that the Universe is becoming more disordered.
Bug#961670: ITP: gftl -- Containers and iterators for Fortran
Package: wnpp Severity: wishlist Owner: Ole Streicher X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org Control: block 961667 by -1 Control: block 961668 by -1 Control: block 961669 by -1 * Package name: gftl Version : 1.2.5 Upstream Author : Tom Clune * URL : https://github.com/Goddard-Fortran-Ecosystem/gFTL * License : Apache Language: Fortran 90 Description : Containers and iterators for Fortran gFTL provides a mechanism to easily create robust containers and associated iterators which can be used within Fortran applications. The primary methods are intended to be as close to their C++ STL analogs as possible. These containers are a powerful productivity multiplier for certain types of software development. This is a dependency of pfunit. The package will be maintained in the DebianScience Team, the repository is https://salsa.debian.org/science-team/gftl This is Fortran 90, where I am quite unexperienced. I'd appreciate if someone could have a look on how to organize the package structure (modules? libs?) and give me hints. Best regards Ole
Processed: ITP: gftl -- Containers and iterators for Fortran
Processing control commands: > block 961667 by -1 Bug #961667 [wnpp] ITP: pfunit -- Parallel Fortran Unit Testing Framework 961667 was blocked by: 961668 961669 961667 was not blocking any bugs. Added blocking bug(s) of 961667: 961670 > block 961668 by -1 Bug #961668 [wnpp] ITP: fargparse -- Command line argument parsing for Fortran 961668 was blocked by: 961669 961668 was blocking: 961667 Added blocking bug(s) of 961668: 961670 > block 961669 by -1 Bug #961669 [wnpp] ITP: gftl-shared -- Common gFTL containers for Fortran intrinsic types 961669 was not blocked by any bugs. 961669 was blocking: 961667 961668 Added blocking bug(s) of 961669: 961670 -- 961667: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961667 961668: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961668 961669: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961669 961670: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961670 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#961669: ITP: gftl-shared -- Common gFTL containers for Fortran intrinsic types
Package: wnpp Severity: wishlist Owner: Ole Streicher X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org Control: block 961667 by -1 Control: block 961668 by -1 * Package name: gftl-shared Version : 0.9.5 Upstream Author : Tom Clune * URL : https://github.com/Goddard-Fortran-Ecosystem/ * License : Apache Language: Fortran 90 Description : Common gFTL containers for Fortran intrinsic types This is a dependency of pfunit. The package will be maintained in the DebianScience Team, the repository is https://salsa.debian.org/science-team/gftl-shared This is Fortran 90, where I am quite unexperienced. I'd appreciate if someone could have a look on how to organize the package structure (modules? libs?) and give me hints. Best regards Ole
Processed: ITP: gftl-shared -- Common gFTL containers for Fortran intrinsic types
Processing control commands: > block 961667 by -1 Bug #961667 [wnpp] ITP: pfunit -- Parallel Fortran Unit Testing Framework 961667 was blocked by: 961668 961667 was not blocking any bugs. Added blocking bug(s) of 961667: 961669 > block 961668 by -1 Bug #961668 [wnpp] ITP: fargparse -- Command line argument parsing for Fortran 961668 was not blocked by any bugs. 961668 was blocking: 961667 Added blocking bug(s) of 961668: 961669 -- 961667: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961667 961668: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961668 961669: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961669 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#961668: ITP: fargparse -- Command line argument parsing for Fortran
Package: wnpp Severity: wishlist Owner: Ole Streicher X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org Control: block 961667 by -1 * Package name: fargparse Version : 0.9.5 Upstream Author : Tom Clune * URL : https://github.com/Goddard-Fortran-Ecosystem/fArgParse * License : NASA Language: Fortran 90 Description : Command line argument parsing for Fortran This is a dependency of pfunit. The package will be maintained in the DebianScience Team, the repository is https://salsa.debian.org/science-team/pfunit This is Fortran 90, where I am quite unexperienced. I'd appreciate if someone could have a look on how to organize the package structure (modules? libs?) and give me hints. Best regards Ole
Processed: ITP: fargparse -- Command line argument parsing for Fortran
Processing control commands: > block 961667 by -1 Bug #961667 [wnpp] ITP: pfunit -- Parallel Fortran Unit Testing Framework 961667 was not blocked by any bugs. 961667 was not blocking any bugs. Added blocking bug(s) of 961667: 961668 -- 961667: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961667 961668: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961668 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#961667: ITP: pfunit -- Parallel Fortran Unit Testing Framework
Package: wnpp Severity: wishlist Owner: Ole Streicher X-Debbugs-Cc: debian-de...@lists.debian.org, debian-scie...@lists.debian.org * Package name: pfunit Version : 4.1.8 Upstream Author : Tom Clune * URL : https://github.com/Goddard-Fortran-Ecosystem/pFUnit * License : NASA Language: Fortran 90 Description : Parallel Fortran Unit Testing Framework pFUnit is a unit testing framework enabling JUnit-like testing of serial and MPI-parallel software written in Fortran. Limited suport for OpenMP is also provided in the form of managing exceptions in a thread-safe manner. The package will be maintained in the Debian Science Team, the repository is https://salsa.debian.org/science-team/pfunit This is Fortran 90, where I am quite unexperienced. I'd appreciate if someone could have a look on how to organize the package structure (modules? libs?) and give me hints. Best regards Ole
Processed: ITP: lighter -- fast and memory-efficient sequencing error corrector
Processing commands for cont...@bugs.debian.org: > owner 961665 Andreas Tille Bug #961665 [wnpp] ITP: lighter -- fast and memory-efficient sequencing error corrector Owner recorded as Andreas Tille . > End of message, stopping processing here. Please contact me if you need assistance. -- 961665: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961665 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#961665: ITP: lighter -- fast and memory-efficient sequencing error corrector
Package: wnpp Severity: wishlist Subject: ITP: lighter -- fast and memory-efficient sequencing error corrector Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: lighter Version : 1.1.2 Upstream Author : Li Song, Liliana Florea and Ben Langmead * URL : https://github.com/mourisl/Lighter * License : GPL-3 Programming Lang: C Description : fast and memory-efficient sequencing error corrector Lighter is a fast, memory-efficient tool for correcting sequencing errors. Lighter avoids counting k-mers. Instead, it uses a pair of Bloom filters, one holding a sample of the input k-mers and the other holding k-mers likely to be correct. As long as the sampling fraction is adjusted in inverse proportion to the depth of sequencing, Bloom filter size can be held constant while maintaining near-constant accuracy. Lighter is parallelized, uses no secondary storage, and is both faster and more memory-efficient than competing approaches while achieving comparable accuracy. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/lighter
Processed: itx own
Processing commands for cont...@bugs.debian.org: > owner 766441 Sławomir Wójcik Bug #766441 [wnpp] ITA: scala-mode-el -- Emacs major mode for editing scala source code Owner recorded as Sławomir Wójcik . > owner 961661 Andreas Tille Bug #961661 [wnpp] ITP: samclip -- filter SAM file for soft and hard clipped alignments Owner recorded as Andreas Tille . > End of message, stopping processing here. Please contact me if you need assistance. -- 766441: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=766441 961661: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961661 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#961661: How to deal with lintian warning "incorrect-path-for-interpreter" properly (Was: Bug#961661: ITP: samclip -- filter SAM file for soft and hard clipped alignments)
On Wed, 27 May 2020 13:50:17 +0200, Andreas Tille wrote: > I'm freqently stumbling upon things like > > W: samclip: incorrect-path-for-interpreter usr/bin/samclip (#!/usr/bin/env > perl != /usr/bin/perl) > > and my usual way to deal with this was firing up sed in d/rules. However, > I can not imagine that you have a more clever way how to deal with this. > Any hint how I can do this more elegantly? We're also using sed, typically: % cat libtext-simpletable-perl/debian/rules #!/usr/bin/make -f PACKAGE = $(shell dh_listpackages) TMP = $(CURDIR)/debian/$(PACKAGE) %: dh $@ override_dh_installexamples: dh_installexamples sed -i '1s|^#!/usr/bin/env perl|#!/usr/bin/perl|' $(TMP)/usr/share/doc/$(PACKAGE)/examples/* or % cat zonemaster-cli/debian/rules #!/usr/bin/make -f PACKAGE = $(shell dh_listpackages) TMP = $(CURDIR)/debian/$(PACKAGE) %: dh $@ override_dh_install: dh_install sed -i '1s|^#!/usr/bin/env perl|#!/usr/bin/perl|' $(TMP)/usr/bin/$(PACKAGE) > Moreover some kind review of this pure Perl package would be nice. (Not from me today.) Cheers, gregor -- .''`. https://info.comodo.priv.at -- Debian Developer https://www.debian.org : :' : OpenPGP fingerprint D1E1 316E 93A7 60A8 104D 85FA BB3A 6801 8649 AA06 `. `' Member VIBE!AT & SPI Inc. -- Supporter Free Software Foundation Europe `- NP: Rolling Stones: Sympathy for the Devil signature.asc Description: Digital Signature
Bug#801858: GLUI
I have prepared some GLUI packages, initially for my own usage, but if there might be interest in them, they are available at http://miriamruiz.es/debian/glui/ Greetings, Miry
Processed (with 1 error): retitle 766441 ITA: scala-mode-el -- Emacs major mode for editing scala source code
Processing commands for cont...@bugs.debian.org: > retitle 766441 ITA: scala-mode-el -- Emacs major mode for editing scala > source code Bug #766441 [wnpp] RFA: scala-mode-el -- Emacs major mode for editing scala source code Changed Bug title to 'ITA: scala-mode-el -- Emacs major mode for editing scala source code' from 'RFA: scala-mode-el -- Emacs major mode for editing scala source code'. > owner 766441vald...@gmail.com Unknown command or malformed arguments to command. > thanks Stopping processing here. Please contact me if you need assistance. -- 766441: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=766441 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Processed: ITP: tiddit -- structural variant calling
Processing commands for cont...@bugs.debian.org: > owner 961659 Andreas Tille Bug #961659 [wnpp] ITP: tiddit -- structural variant calling Owner recorded as Andreas Tille . > End of message, stopping processing here. Please contact me if you need assistance. -- 961659: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961659 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
Bug#961661: How to deal with lintian warning "incorrect-path-for-interpreter" properly (Was: Bug#961661: ITP: samclip -- filter SAM file for soft and hard clipped alignments)
Hi Perl team, I'm freqently stumbling upon things like W: samclip: incorrect-path-for-interpreter usr/bin/samclip (#!/usr/bin/env perl != /usr/bin/perl) and my usual way to deal with this was firing up sed in d/rules. However, I can not imagine that you have a more clever way how to deal with this. Any hint how I can do this more elegantly? Moreover some kind review of this pure Perl package would be nice. Kind regards Andreas. On Wed, May 27, 2020 at 01:43:46PM +0200, Andreas Tille wrote: > Package: wnpp > Severity: wishlist > > Subject: ITP: samclip -- filter SAM file for soft and hard clipped alignments > Package: wnpp > Owner: Andreas Tille > Severity: wishlist > > * Package name: samclip > Version : 0.4.0 > Upstream Author : Torsten Seemann > * URL : https://github.com/tseemann/samclip > * License : GPL-3 > Programming Lang: (C, C++, C#, Perl, Python, etc.) > Description : filter SAM file for soft and hard clipped alignments > Most short read aligners perform local alignment of reads to the > reference genome. Examples includes bwa mem, minimap2, and bowtie2 > (unless in --end-to-end mode). This means the ends of the read may not > be part of the best alignment. > . > This can be caused by: > . > * adapter sequences (aren't in the reference) > * poor quality bases (mismatches only make the alignment score worse) > * structural variation in your sample compared to the reference > * reads overlapping the start and end of contigs (including > circular genomes) > . > Read aligners output a SAM file. Column 6 in this format stores the > CIGAR string. which describes which parts of the read aligned and which > didn't. The unaligned ends of the read can be "soft" or "hard" clipped, > denoted with S and H at each end of the CIGAR string. It is possible for > both types to be present, but that is not common. Soft and hard don't > mean anything biologically, they just refer to whether the full read > sequence is in the SAM file or not. > > Remark: This package is maintained by Debian Med Packaging Team at >https://salsa.debian.org/med-team/samclip > > ___ > Debian-med-packaging mailing list > debian-med-packag...@alioth-lists.debian.net > https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging -- http://fam-tille.de
Bug#961661: ITP: samclip -- filter SAM file for soft and hard clipped alignments
Package: wnpp Severity: wishlist Subject: ITP: samclip -- filter SAM file for soft and hard clipped alignments Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: samclip Version : 0.4.0 Upstream Author : Torsten Seemann * URL : https://github.com/tseemann/samclip * License : GPL-3 Programming Lang: (C, C++, C#, Perl, Python, etc.) Description : filter SAM file for soft and hard clipped alignments Most short read aligners perform local alignment of reads to the reference genome. Examples includes bwa mem, minimap2, and bowtie2 (unless in --end-to-end mode). This means the ends of the read may not be part of the best alignment. . This can be caused by: . * adapter sequences (aren't in the reference) * poor quality bases (mismatches only make the alignment score worse) * structural variation in your sample compared to the reference * reads overlapping the start and end of contigs (including circular genomes) . Read aligners output a SAM file. Column 6 in this format stores the CIGAR string. which describes which parts of the read aligned and which didn't. The unaligned ends of the read can be "soft" or "hard" clipped, denoted with S and H at each end of the CIGAR string. It is possible for both types to be present, but that is not common. Soft and hard don't mean anything biologically, they just refer to whether the full read sequence is in the SAM file or not. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/samclip
Bug#960937: marked as done (ITP: cat-bat -- tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs))
Your message dated Wed, 27 May 2020 11:00:09 + with message-id and subject line Bug#960937: fixed in cat-bat 5.0.4-1 has caused the Debian Bug report #960937, regarding ITP: cat-bat -- tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 960937: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=960937 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems --- Begin Message --- Package: wnpp Severity: wishlist Subject: ITP: cat-bat -- tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: cat-bat Version : 5.0.4 Upstream Author : Universiteit Utrecht * URL : https://github.com/dutilh/CAT * License : MIT Programming Lang: Python Description : tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both known and (highly) unknown microorganisms, as generated by contemporary metagenomics studies. The core algorithm of both programs involves gene calling, mapping of predicted ORFs against the nr protein database, and voting-based classification of the entire contig / MAG based on classification of the individual ORFs. CAT and BAT can be run from intermediate steps if files are formatted appropriately. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/cat-bat --- End Message --- --- Begin Message --- Source: cat-bat Source-Version: 5.0.4-1 Done: Andreas Tille We believe that the bug you reported is fixed in the latest version of cat-bat, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 960...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille (supplier of updated cat-bat package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Mon, 18 May 2020 17:05:20 +0200 Source: cat-bat Binary: cat-bat Architecture: source amd64 Version: 5.0.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: cat-bat- taxonomic classification of contigs and metagenome-assembled geno Closes: 960937 Changes: cat-bat (5.0.4-1) unstable; urgency=medium . * Initial release (Closes: #960937) Checksums-Sha1: 26686f6ebe230477d03e2b3d66efd525e4777040 1937 cat-bat_5.0.4-1.dsc fe0612b0b944b82c2ea0f601917dca3ca069c510 33327 cat-bat_5.0.4.orig.tar.gz 6233996046a5deccf25a2fdbffc92f59bdcc452d 4004 cat-bat_5.0.4-1.debian.tar.xz 13ac95f333d84c98552f8578bb542af7bfbca7ed 5829 cat-bat_5.0.4-1_amd64.buildinfo 7cb9d47848b6f71cbb1b37494e4d87ae504ecb7a 27908 cat-bat_5.0.4-1_amd64.deb Checksums-Sha256: 4b936cfbad76bd566451dd7ffd14d2ce0abb2710aa8587b475a7756ea3c409e3 1937 cat-bat_5.0.4-1.dsc 2b43e7f286d68f463fe6db0740eb64b4cff75dfbb25a690366a3ace66656d35c 33327 cat-bat_5.0.4.orig.tar.gz 97865b323e7a67822fea20c76f1f748d02d7b565a5e9c2d0e33638d8ae224a9d 4004 cat-bat_5.0.4-1.debian.tar.xz b417cb762931ccd9a644d0148f815462dc828b62249b4e243227fa47d0de2186 5829 cat-bat_5.0.4-1_amd64.buildinfo 0fba6220508ab954cd36a9ae04d6d2c7b0eed1136bac4fc3e82a7c95cf1215d3 27908 cat-bat_5.0.4-1_amd64.deb Files: 81d8b9fcf42ac6df6ec59fbd25ce961c 1937 science optional cat-bat_5.0.4-1.dsc 0cb951a6175655f124815c5abd6b7349 33327 science optional cat-bat_5.0.4.orig.tar.gz 02cdfd66df789478ab8775e2cb74b33f 4004 science optional cat-bat_5.0.4-1.debian.tar.xz 6f2419f73a476fd3d08db2be927cfb55 5829 science optional cat-bat_5.0.4-1_amd64.buildinfo d33010973ec129b38cb64a8459a2c8ec 27908 science optional cat-bat_5.0.4-1_amd64.deb -BEGIN PGP SIGNATURE- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl7CpogRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEOBg/+LRUtxGjF+XVOGYcKjBfA4qA3VqCKGxQ9 kAnJrNISvKAG04BCH9QcJJO+MfYJZ9easbExuokI3AGnybqLPfKoqycGre2qAmim LjDBFt9Uurz17HSn7XyywZvWRM0dVUePdXJBK2i2/VS4fVNl4/1fxTpENevJyfCV ZcU9
Bug#960509: marked as done (ITP: ivar -- functions broadly useful for viral amplicon-based sequencing)
Your message dated Wed, 27 May 2020 11:00:09 + with message-id and subject line Bug#960509: fixed in ivar 1.2.2+dfsg-1 has caused the Debian Bug report #960509, regarding ITP: ivar -- functions broadly useful for viral amplicon-based sequencing to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 960509: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=960509 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems --- Begin Message --- Package: wnpp Severity: wishlist Subject: ITP: ivar -- functions broadly useful for viral amplicon-based sequencing Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: ivar Version : 1.2.2 Upstream Author : Nathan D. Grubaugh, Karthik Gangavarapu * URL : https://github.com/andersen-lab/ivar * License : GPL-3+ Programming Lang: C Description : functions broadly useful for viral amplicon-based sequencing iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions: . 1. trimming of primers and low-quality bases, 2. consensus calling, 3. variant calling - both iSNVs and insertions/deletions, and 4. identifying mismatches to primer sequences and excluding the corresponding reads from alignment files. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/ivar --- End Message --- --- Begin Message --- Source: ivar Source-Version: 1.2.2+dfsg-1 Done: Andreas Tille We believe that the bug you reported is fixed in the latest version of ivar, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 960...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille (supplier of updated ivar package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -BEGIN PGP SIGNED MESSAGE- Hash: SHA512 Format: 1.8 Date: Wed, 13 May 2020 14:51:11 +0200 Source: ivar Binary: ivar ivar-dbgsym ivar-doc Architecture: source amd64 all Version: 1.2.2+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: ivar - functions broadly useful for viral amplicon-based sequencing ivar-doc - functions broadly useful for viral amplicon-based sequencing (doc Closes: 960509 Changes: ivar (1.2.2+dfsg-1) unstable; urgency=medium . * Initial release (Closes: #960509) Checksums-Sha1: 9b6c9599aaf65785ed6e2eb30f277eeb7937b816 1991 ivar_1.2.2+dfsg-1.dsc e227d21153a073a6883162eb0c8abebde6727399 621232 ivar_1.2.2+dfsg.orig.tar.xz 7756cf1357a43ca5b7869a5c5f9d67866490a029 3808 ivar_1.2.2+dfsg-1.debian.tar.xz a97ef2b362daadd4ce3227bcfa3cd15d0d615f1c 581600 ivar-dbgsym_1.2.2+dfsg-1_amd64.deb 8c31c0d4c07c9575883f39279334f858682b6bb1 84856 ivar-doc_1.2.2+dfsg-1_all.deb 2a88dc8d4faf8c1456dd058b0b7d8231531afa6b 6695 ivar_1.2.2+dfsg-1_amd64.buildinfo 56e7556257408317fa03a05ceb442f3d5abf8c16 118628 ivar_1.2.2+dfsg-1_amd64.deb Checksums-Sha256: 8138a6e37d6f3b7439efb0cda99ea76a63e2807659db863a866f183a47820754 1991 ivar_1.2.2+dfsg-1.dsc 22ba839a91ed94fb8fc489973289ce5703a0766f0e3079aadf2b4a3b5ee18249 621232 ivar_1.2.2+dfsg.orig.tar.xz fc2a2f412ca275a368d05aab9c2bb62971a0c91ed7984a06d089e4606e2d5285 3808 ivar_1.2.2+dfsg-1.debian.tar.xz cd610cdf0b5a829bccd23ab10f9ef256a6528cc14618599bdf5f73ec7bd37178 581600 ivar-dbgsym_1.2.2+dfsg-1_amd64.deb de0fc85af0401f05a38b5f0ee68171ef1d90a8a747ed6a4660fbd007bfbc7513 84856 ivar-doc_1.2.2+dfsg-1_all.deb bea8a97cb88cd406764221263579c9ef34568a8ef14cf12eeb10dc2d6b9aea7a 6695 ivar_1.2.2+dfsg-1_amd64.buildinfo c9143f698ba5663998b4a15fd2bc327af397a4e81cb527eb16e84adcff0d5615 118628 ivar_1.2.2+dfsg-1_amd64.deb Files: 88ec8ac9b0d75370e66e8fbd54a28e8a 1991 science optional ivar_1.2.2+dfsg-1.dsc d23ac0d31585a3eb05399bcaebe4f36e 621232 science opt
Bug#961659: ITP: tiddit -- structural variant calling
Package: wnpp Severity: wishlist Subject: ITP: tiddit -- structural variant calling Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: tiddit Version : 2.11.0 Upstream Author : Francesco Vezzi , * URL : https://github.com/SciLifeLab/TIDDIT * License : GPL-3 Programming Lang: C Description : structural variant calling TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs. . TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/tiddit
Bug#961587: marked as done (ITP: flash -- Fast Length Adjustment of SHort reads)
Your message dated Wed, 27 May 2020 10:00:09 + with message-id and subject line Bug#961587: fixed in flash 1.2.11-1 has caused the Debian Bug report #961587, regarding ITP: flash -- Fast Length Adjustment of SHort reads to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 961587: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961587 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems --- Begin Message --- Package: wnpp Severity: wishlist Subject: ITP: flash -- Fast Length Adjustment of SHort reads Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: flash Version : 1.2.11 Upstream Author : Tanja Magoc * URL : https://ccb.jhu.edu/software/FLASH/ * License : GPL-3+ Programming Lang: C Description : Fast Length Adjustment of SHort reads FLASH (Fast Length Adjustment of SHort reads) is a very fast and accurate software tool to merge paired-end reads from next-generation sequencing experiments. FLASH is designed to merge pairs of reads when the original DNA fragments are shorter than twice the length of reads. The resulting longer reads can significantly improve genome assemblies. They can also improve transcriptome assembly when FLASH is used to merge RNA-seq data. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/flash --- End Message --- --- Begin Message --- Source: flash Source-Version: 1.2.11-1 Done: Andreas Tille We believe that the bug you reported is fixed in the latest version of flash, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 961...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille (supplier of updated flash package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Tue, 26 May 2020 13:30:31 +0200 Source: flash Binary: flash flash-dbgsym Architecture: source amd64 Version: 1.2.11-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: flash - Fast Length Adjustment of SHort reads Closes: 961587 Changes: flash (1.2.11-1) unstable; urgency=medium . * Initial release (Closes: #961587) Checksums-Sha1: 2bd1aa1bb0c66466d62613c77a17123dd2a29f30 1920 flash_1.2.11-1.dsc 0df7b2467e5e5d778031ae10dbbd2ed52996a282 48889 flash_1.2.11.orig.tar.gz 66598017d19098d97391dd20fe92631039a9afee 6220 flash_1.2.11-1.debian.tar.xz b321dff0ebfb1230a47aed5c40b9dccb45da53a3 65948 flash-dbgsym_1.2.11-1_amd64.deb 797af0809c96f3eeeb6bf60a645ca8e0a536c9d2 5573 flash_1.2.11-1_amd64.buildinfo 890ae22e3e45b5b3b67515e9dd128e2f1d407b66 34904 flash_1.2.11-1_amd64.deb Checksums-Sha256: 29f95a0810530c4e08559334ad01a5f059b1e177ba6071fdac5d9d801f2d486f 1920 flash_1.2.11-1.dsc 685ca6f7fedda07434d8ee03c536f4763385671c4509c5bb48beb3055fd236ac 48889 flash_1.2.11.orig.tar.gz 932293fb7c7745fa217dd5fd70894932abc3debf8691112f8c52f42d0a498b6e 6220 flash_1.2.11-1.debian.tar.xz b88d4c0d8edd8e652f655443b34d797bb2766dfb6c609f6d501d00924a707b80 65948 flash-dbgsym_1.2.11-1_amd64.deb 1a5a5f220e27faa5705f70b0b53a1606b615170dae674b37abc05d7293aad9d4 5573 flash_1.2.11-1_amd64.buildinfo ed81ebc06bee7e01abc46eaf59572aa4399f3d7732118e14a4abd8b3bb5c 34904 flash_1.2.11-1_amd64.deb Files: e23adac643f466cbd0226f78046ba0e5 1920 science optional flash_1.2.11-1.dsc e4d355023a766afaaab2d62f912b605c 48889 science optional flash_1.2.11.orig.tar.gz 99528e0cafc3234089697be6d9700f2b 6220 science optional flash_1.2.11-1.debian.tar.xz b9ded5f6dd6becbec68a11c0bcce50d9 65948 debug optional flash-dbgsym_1.2.11-1_amd64.deb 7f38a2a51b6eacafc1b1f1b26fc67024 5573 science optional flash_1.2.11-1_amd64.buildinfo 3ff2a54b8233b0e93de965298eaac41e 34904 science optional flash_1.2.11-1_amd64.deb -BEGIN PGP SIGNATURE- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl7NcRARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGEtw//Tz1K5odKp3RmIVAXNJKURK5IXowi2/Uc pSAKCct87Yp6aYOkxiy8oJ/bMIVVhEfztuirdMcOjgaV4WcYIBNXXDKl16wrshls ghWhasi2qBgTLXTVaGniJ7xo45X5TEpo9edyF+WD9dbt3qoDOx15lEOpY7UP3qEG A+zRLPCVo99KwEGyEGTWVmjoyiEhg8vrzhYhHPwHcREvUpQKzgxVzMtbWX27ohtL GFb8wvWk3Xwzf
Bug#960408: marked as done (ITP: r-other-ascat -- Allele-Specific Copy Number Analysis of Tumours)
Your message dated Wed, 27 May 2020 10:00:10 + with message-id and subject line Bug#960408: fixed in r-other-ascat 2.5.2-1 has caused the Debian Bug report #960408, regarding ITP: r-other-ascat -- Allele-Specific Copy Number Analysis of Tumours to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 960408: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=960408 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems --- Begin Message --- Package: wnpp Severity: wishlist Subject: ITP: r-other-ascat -- Allele-Specific Copy Number Analysis of Tumours Package: wnpp Owner: Andreas Tille Severity: wishlist * Package name: r-other-ascat Version : 2.5.2 Upstream Author : Peter Van Loo, Gro Nielsen, Jiqiu Cheng, Stefan * URL : https://github.com/Crick-CancerGenomics/ascat * License : GPL-3 Programming Lang: GNU R Description : Allele-Specific Copy Number Analysis of Tumours ASCAT (allele-specific copy number analysis of tumors) is a allele- specific copy number analysis of the in vivo breast cancer genome. It can be used to accurately dissect the allele-specific copy number of solid tumors, simultaneously estimating and adjusting for both tumor ploidy and nonaberrant cell admixture. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-other-ascat --- End Message --- --- Begin Message --- Source: r-other-ascat Source-Version: 2.5.2-1 Done: Andreas Tille We believe that the bug you reported is fixed in the latest version of r-other-ascat, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 960...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille (supplier of updated r-other-ascat package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Format: 1.8 Date: Tue, 12 May 2020 13:18:09 +0200 Source: r-other-ascat Binary: r-other-ascat Architecture: source all Version: 2.5.2-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-other-ascat - Allele-Specific Copy Number Analysis of Tumours Closes: 960408 Changes: r-other-ascat (2.5.2-1) unstable; urgency=medium . * Initial release (closes: #960408) Checksums-Sha1: 418ad48a4d9ffe674a557dfbd3d9d85ce75a6cd5 2069 r-other-ascat_2.5.2-1.dsc d5cbccca04ae237451cf2a8c9bbe17f921bf680c 8856296 r-other-ascat_2.5.2.orig.tar.gz aec67ae6b240c95f99e220e68180057f6af0df6c 2244 r-other-ascat_2.5.2-1.debian.tar.xz fa8f714fe3b859e84885d1ea7ce3d07d1c1e5786 206132 r-other-ascat_2.5.2-1_all.deb 22dad782238fc9d6e08c58c22fa92fc87a4f4d8a 8508 r-other-ascat_2.5.2-1_amd64.buildinfo Checksums-Sha256: d1c93fb17ad344e209937a316a7d7b1b85b7a81f795a56f68f4a74840446b6d0 2069 r-other-ascat_2.5.2-1.dsc 28acad8e46df726806d1f2de74dfe8fc8e70d911ebfbb518096a6898b1f5e2c8 8856296 r-other-ascat_2.5.2.orig.tar.gz 19abf06081717a57b520ebe4779807b4e9eb34f68844632bbbfc55958bd8a618 2244 r-other-ascat_2.5.2-1.debian.tar.xz a16cb9bcdd97e50260934c653b6e23f8d476a0ea3ef3de16380a9730e66c09f0 206132 r-other-ascat_2.5.2-1_all.deb e6e52229c81b8676a3747ca69aef84225aae2b2ae7d713cc0218600a539b2b82 8508 r-other-ascat_2.5.2-1_amd64.buildinfo Files: 6119bf796680dbdad1295ddf4c9f03b2 2069 gnu-r optional r-other-ascat_2.5.2-1.dsc 1cda7e875943fe1c18fc4e1cb6158d12 8856296 gnu-r optional r-other-ascat_2.5.2.orig.tar.gz e7832c6419f4fecd6acddb71649b119d 2244 gnu-r optional r-other-ascat_2.5.2-1.debian.tar.xz 9395967c268d3879105c68cd11206f65 206132 gnu-r optional r-other-ascat_2.5.2-1_all.deb 3dc4d261439780c66285b52c94c22068 8508 gnu-r optional r-other-ascat_2.5.2-1_amd64.buildinfo -BEGIN PGP SIGNATURE- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl66hq0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEZvQ/8CGrtlyQZy2d6dtLSgWT3PIkxlIQewFa7 niLEm6veppE5NFiUoNQ9BJzZmO5cwZt6SZ7hpJiw7Aq+PMg0p3+7xayPuDWFf3nP mM09yBBdsxVVheV0VUye34/j64AwcN2GaB8yFVqtcTAA5ax/ymA3GFNbDk66QbFp T6MtDOOuRY+Anhque+/wDSKDmhUBOuyhu8W38RbbWCpy/V5GZFhS5Z72m67h2eFK P3qz3ysjDOQ01D89Ep3AfkxqWb+aDNUTU/F2Y+NWvTLHWDGghV6S4+BH2Q+ffrpj TBMoB3D/kB2ucKXF4Et3YB7SO5M+KDPp0xqbIrgM41RjKYBBy4Ghl48ijTIYzu+V zRWxv/vzz
Bug#961603: RFP: verapdf -- first complete open source PDF/A validator
Hi John, I don't know why the Debian TeX Maintainer list got this email, but this is definitely nothing we will want to package. Since it is purely Java stuff, I suggest the Java groups. Also, the list of dependencies is impressive, not sure whether all of them have been packaged for debian, so it might be a considerable endeavour to package verapdf. Best Norbert On Tue, 26 May 2020, John Scott wrote: > * Package name: verapdf > Version : 1.16.1 > Upstream Author : Open Preservation Foundation > * URL : https://openpreservation.org/products/verapdf/ -- PREINING Norbert https://www.preining.info Accelia Inc. + IFMGA ProGuide + TU Wien + JAIST + TeX Live + Debian Dev GPG: 0x860CDC13 fp: F7D8 A928 26E3 16A1 9FA0 ACF0 6CAC A448 860C DC13
