Processed: reassign 964238 to golang-github-lucas-clemente-quic-go

2020-07-03 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> reassign 964238 golang-github-lucas-clemente-quic-go
Bug #964238 [wnpp] Please package 0.17.2
Bug reassigned from package 'wnpp' to 'golang-github-lucas-clemente-quic-go'.
Ignoring request to alter found versions of bug #964238 to the same values 
previously set
Ignoring request to alter fixed versions of bug #964238 to the same values 
previously set
> thanks
Stopping processing here.

Please contact me if you need assistance.
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Bug#964238: Please package 0.17.2

2020-07-03 Thread Alexandre Viau
Package: wnpp
Severity: wishlist
Owner: Alexandre Viau 

Hello!

Would you please upload 0.17.2?

It looks like Syncthing needs a newer version of quic-go.

Cheers,

-- 
Alexandre Viau
av...@debian.org



signature.asc
Description: OpenPGP digital signature


Bug#714454: ITP: polyphone -- soundfont editor (.sf2 format 2.01 and 2.04)

2020-07-03 Thread Thorsten Glaser
tags 714454 + pending
thanks

Dixi quod…

>Packaging status: repository at
>https://evolvis.org/plugins/scmgit/cgi-bin/gitweb.cgi?p=alioth/polyphone.git;a=summary

Updated.

>We’re currently held up by some licencing issues:
>
>• https://github.com/davy7125/polyphone/issues/105 (showstopper,
>  but the GPLv2-only code is from MuseScore, whom I asked to relicence)

The request for relicencing has been received, but was not yet
finished progressing. In the meantime, I’ve managed to build a
functioning Polyphone with SF3 support removed (+dfsg1).

>• https://github.com/davy7125/polyphone/issues/106 (fixed in Debian,
>  by adding the necessary info and licence to d/copyright)

Updated to git master (their latest release wouldn’t even install,
and HEAD seems to have only low-risk bugfixes so far), updated the
fontawesome list accordingly.

>• https://github.com/davy7125/polyphone/issues/107 (worked around,
>  by using wolfSSL instead of OpenSSL, might even work)

This does work. Also thanks to Felix Lechner (WolfSSL maintainer)
who responded quick and very helpfully.

>I’m otherwise getting acceptable progress with packaging. I’ll also
>make it use the system copy of sfarklib instead of bundling one, as

This also works. I’ve uploaded an initial package to NEW.

>The upstream-provided .deb crashes quite a lot for me, especially
>on exit. I hope this is a matter of integration and will fix itself
>with a proper build on sid; if not help debugging the C++/Qt5 issues
>is welcome.

It still crashes; I’ve reported the first two upstream.

Polyphone is usable when you make sure to start JACK *first*.
The crash at shutdown occurs when free()ing and is negligible.
I’ll hope upstream fixes them; otherwise, help is welcome.
Also feel free to review the repository / package. It supercedes
the illegal one from upstream and is en par with latest Debian
packaging standards (0 lintian warnings). I’ll forward patches
to upstream, too…

bye,
//mirabilos
-- 
Solange man keine schmutzigen Tricks macht, und ich meine *wirklich*
schmutzige Tricks, wie bei einer doppelt verketteten Liste beide
Pointer XORen und in nur einem Word speichern, funktioniert Boehm ganz
hervorragend.   -- Andreas Bogk über boehm-gc in d.a.s.r



Processed: Re: ITP: polyphone -- soundfont editor (.sf2 format 2.01 and 2.04)

2020-07-03 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> tags 714454 + pending
Bug #714454 [wnpp] ITP: polyphone -- soundfont editor (.sf2 format 2.01 and 
2.04)
Added tag(s) pending.
> thanks
Stopping processing here.

Please contact me if you need assistance.
-- 
714454: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=714454
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#964232: ITP: fairy-stockfish -- chess variant engine derived from Stockfish, including Shogi and XiangQi support

2020-07-03 Thread Yann Dirson
Package: wnpp
Severity: wishlist
Owner: Yann Dirson 

* Package name: fairy-stockfish
  Version : 11.1
  Upstream Author : Fabian Fichter (unknown email)
* URL : https://github.com/ianfab/Fairy-Stockfish
* License : GPLv3+
  Programming Lang: C++
  Description : chess variant engine derived from Stockfish, including 
Shogi and XiangQi support

This is notably the AI engine behind pychess.org.  Supports many
protocols (CECP, UCI, USI, UCCI).



Processed: Re: ITP: volatility3 -- advanced memory forensics framework

2020-07-03 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> retitle 942754 RFS: volatility3 -- advanced memory forensics framework
Bug #942754 [wnpp] ITP: volatility3 -- advanced memory forensics framework
Changed Bug title to 'RFS: volatility3 -- advanced memory forensics framework' 
from 'ITP: volatility3 -- advanced memory forensics framework'.
> noowner 942754
Bug #942754 [wnpp] RFS: volatility3 -- advanced memory forensics framework
Removed annotation that Bug was owned by Joao Eriberto Mota Filho 
.
> stop
Stopping processing here.

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Bug#942754: ITP: volatility3 -- advanced memory forensics framework

2020-07-03 Thread Eriberto Mota
retitle 942754 RFS: volatility3 -- advanced memory forensics framework
noowner 942754
stop


The volatility3 project needs some unlicensed and giant files. I am not sure
if it is DFSG. I am dropping it.

Eriberto



Processed: Re: ITP: treezy -- Swiss army knife for working with directory and file trees

2020-07-03 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> retitle 947684 RFS: treezy -- Swiss army knife for working with directory and 
> file trees
Bug #947684 [wnpp] ITP: treezy -- Swiss army knife for working with directory 
and file trees
Changed Bug title to 'RFS: treezy -- Swiss army knife for working with 
directory and file trees' from 'ITP: treezy -- Swiss army knife for working 
with directory and file trees'.
> noowner 947684
Bug #947684 [wnpp] RFS: treezy -- Swiss army knife for working with directory 
and file trees
Removed annotation that Bug was owned by Joao Eriberto Mota Filho 
.
> stop
Stopping processing here.

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Bug#947684: ITP: treezy -- Swiss army knife for working with directory and file trees

2020-07-03 Thread Eriberto Mota
retitle 947684 RFS: treezy -- Swiss army knife for working with directory and 
file trees
noowner 947684
stop


The treezy project didn't take off. I am converting my ITP to an RFS.

Eriberto



Bug#861182: RFS ete

2020-07-03 Thread Andreas Tille
On Fri, Jul 03, 2020 at 05:10:32PM +0300, mer...@debian.org wrote:
> On 2020-07-03 13:50, zhao feng wrote:
> > Thanks for your help. I can build the package on buster and bullyseye.
> > Which distribution do you use? I find the version of softwares like
> > python is quite new.
> 
> The package fails to build on clean sid chroot. Most likely some Python
> dependencies are missing from debian/control.

The package at

   https://salsa.debian.org/med-team/python-ete3

builds but is also not finished yet.  I do not remember what had stopped
me from finalising and uploading.  Please checkout and moreover if you
talk next time about "ete packaging repositor" provide a link. :-)

> By the way, packaging of 'ete3' seems to be ongoing in Debian Med team
> as well (adding Andreas in CC):
> https://salsa.debian.org/med-team/python-ete3. I suggest getting in
> touch with them to keep duplicate efforts minimal.

Definitely.  Thanks for spotting.

Kind regards

 Andreas. 

-- 
http://fam-tille.de



Bug#861182: RFS ete

2020-07-03 Thread Andreas Tille
Hi,

On Tue, Jun 30, 2020 at 12:01:59PM +0300, mer...@debian.org wrote:
> On 2020-06-30 11:56, zhao feng wrote:
> > To access further information about this package, please visit the
> > following URL:
> > 
> >   https://mentors.debian.net/package/ete

I'd love to sponsor any package that is relevant for Debian Med but my
personal policy is to sponsor only from **salsa.debian.org** .  BTW,
there is an ITP for ete (#861182) which was turned into an RFP.  You
should at least claim ownership for this bug and turn it into ITP again.
 
Since the package is clearly in the scope of Debian Med I would like
you to become a member of Debian Med team and maintain the package in
the existing repository[1].

So my suggestion is the following:

   1. I've added zhaofeng to the Debian Med team (guessing its you)
   2. You push all your changes to that repository - feel free to
  be "rude" and change what you consider necessary to change,
  make you also the "Uploader"
   3. You ping me once you consider ready via the mailing list
debian-...@lists.debian.org
   4. I'll welcome you in the Debian Med team and upload the
  package (if Andrius will not beat me in this ;-) )

Does this sound like a good plan to you?

@Andrius: Thanks for keeping me in CC - I would have missed this
otherwise.

Kind regards

  Andreas.


[1] https://salsa.debian.org/med-team/python-ete3

-- 
http://fam-tille.de



Processed: ITP: mecat2 -- ultra-fast and accurate de novo assembly tools for SMRT reads

2020-07-03 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> owner 964202 Shayan Doust 
Bug #964202 [wnpp] ITP: mecat2 -- ultra-fast and accurate de novo assembly 
tools for SMRT reads
Owner recorded as Shayan Doust .
>
End of message, stopping processing here.

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Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#964202: ITP: mecat2 -- ultra-fast and accurate de novo assembly tools for SMRT reads

2020-07-03 Thread Shayan Doust
Package: wnpp
Severity: wishlist

Subject: ITP: mecat2 -- ultra-fast and accurate de novo assembly tools for SMRT 
reads
Package: wnpp
Owner: Shayan Doust 
Severity: wishlist

* Package name: mecat2
  Version : 0.0+git20200428.f54c542
  Upstream Author : Chuan-Le Xiao
* URL : https://github.com/xiaochuanle/MECAT2
* License : GPL-3
  Programming Lang: C
  Description : ultra-fast and accurate de novo assembly tools for SMRT 
reads
 An improved version of MECAT. It is an ultra-fast and accurate mapping
 and error correcting de novo assembly tools for single molecula
 sequencing (SMRT) reads. MECAT2 consists of the following three modules:
  1. mecat2map: a fast and accurate alignment tool for SMRT reads.
  2. mecat2cns: correct noisy reads based on their pairwise overlaps.
  3. fsa: a string graph based assembly tool.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/mecat2



Bug#942166: marked as done (ITP: malcontent -- library for parental control of applications)

2020-07-03 Thread Debian Bug Tracking System
Your message dated Fri, 03 Jul 2020 15:00:14 +
with message-id 
and subject line Bug#942166: fixed in malcontent 0.6.0-1~exp1
has caused the Debian Bug report #942166,
regarding ITP: malcontent -- library for parental control of applications
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
942166: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=942166
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist

* Package name: malcontent
  Version : 0.4.0
  Upstream Author : Philip Withnall / Endless
* URL : https://gitlab.freedesktop.org/pwithnall/malcontent
* License : LGPL-2.1+
  Programming Lang: C with GObject
  Description : library for parental control of applications

malcontent implements support for restricting the type of content
accessible to non-administrator accounts on a Linux system. Typically,
when this is used, a non-administrator account will be for a child using
the system; and the administrator accounts will be for the parents;
and the content being filtered will be apps which are not suitable for
the child to use, due to (for example) being too violent.

This is not a security boundary, and a sufficiently technically advanced
user may always work around these parental controls. malcontent is not a
mandatory access control (MAC) system like AppArmor or SELinux. However,
its correct use by applications should provide enough of an obstacle
to prevent users easily or accidentally having access to content which
they shouldn’t.



Flatpak 1.5.1+ will optionally use this library to check for permission
to install and run apps. I don't intend to package or maintain it myself,
but if someone else maintains it, I'm willing to enable the dependency
in Flatpak.

Presumably other projects, such as GNOME Shell, will gain a similar
optional dependency.
--- End Message ---
--- Begin Message ---
Source: malcontent
Source-Version: 0.6.0-1~exp1
Done: Laurent Bigonville 

We believe that the bug you reported is fixed in the latest version of
malcontent, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 942...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Laurent Bigonville  (supplier of updated malcontent package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Sat, 07 Mar 2020 12:22:32 +0100
Source: malcontent
Binary: gir1.2-malcontent-0 gir1.2-malcontentui-0 libmalcontent-0-0 
libmalcontent-0-0-dbgsym libmalcontent-0-dev libmalcontent-ui-0-0 
libmalcontent-ui-0-0-dbgsym libmalcontent-ui-0-dev libpam-malcontent 
libpam-malcontent-dbgsym malcontent malcontent-gui malcontent-gui-dbgsym
Architecture: source amd64 all
Version: 0.6.0-1~exp1
Distribution: experimental
Urgency: medium
Maintainer: Debian freedesktop.org maintainers 

Changed-By: Laurent Bigonville 
Description:
 gir1.2-malcontent-0 - GObject introspection bindings for libmalcontent
 gir1.2-malcontentui-0 - GObject introspection bindings for libmalcontent-ui
 libmalcontent-0-0 - library for parental control of applications
 libmalcontent-0-dev - development files for libmalcontent
 libmalcontent-ui-0-0 - library for parental control of applications - GTK+ 
widgets and d
 libmalcontent-ui-0-dev - development files for libmalcontent-ui
 libpam-malcontent - PAM module to control the time a user is spending on the 
computer
 malcontent - framework for parental control of applications
 malcontent-gui - GUI to configure malcontent
Closes: 942166
Changes:
 malcontent (0.6.0-1~exp1) experimental; urgency=medium
 .
   * Initial release (Closes: #942166)
Checksums-Sha1:
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libmalcontent-0-0-dbgsym_0.6.0-1~exp1_amd64.deb
 

Bug#916333: marked as done (ITP: dav1d -- fast and small AV1 video stream decoder)

2020-07-03 Thread Debian Bug Tracking System
Your message dated Fri, 03 Jul 2020 15:00:11 +
with message-id 
and subject line Bug#916333: fixed in dav1d 0.5.2-1
has caused the Debian Bug report #916333,
regarding ITP: dav1d -- fast and small AV1 video stream decoder
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
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--- Begin Message ---
Package: wnpp
Owner: Debian Multimedia Maintainers 
Severity: wishlist

Package name: dav1d
Version: 0.1.0
Upstream Author: VideoLan
URL: https://code.videolan.org/videolan/dav1d
License: BSD-2-clause
Description: fast and small AV1 video stream decoder
 dav1d is an AOMedia Video 1 (AV1) cross-platform decoder and focused on speed
 and correctness.
 .
 dav1d supports the following features:
  * support for all features of the AV1 bitstream
  * support for all bitdepth, 8, 10 and 12bits
  * support for all chroma subsamplings 4:2:0, 4:2:2, 4:4:4 and grayscale
  * full acceleration for AVX-2 64bits processors
  * partial acceleration for SSSE3 processors
  * partial acceleration for NEON processors

This package is maintained by Debian Multimedia Team at
  https://salsa.debian.org/multimedia-team/dav1d
--- End Message ---
--- Begin Message ---
Source: dav1d
Source-Version: 0.5.2-1
Done: =?utf-8?q?Dylan_A=C3=AFssi?= 

We believe that the bug you reported is fixed in the latest version of
dav1d, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 916...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Dylan Aïssi  (supplier of updated dav1d package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA512

Format: 1.8
Date: Sat, 11 Jan 2020 16:30:36 +0100
Source: dav1d
Binary: dav1d dav1d-dbgsym libdav1d-dev libdav1d3 libdav1d3-dbgsym
Architecture: source amd64
Version: 0.5.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Multimedia Maintainers 
Changed-By: Dylan Aïssi 
Description:
 dav1d  - fast and small AV1 video stream decoder
 libdav1d-dev - fast and small AV1 video stream decoder (development files)
 libdav1d3  - fast and small AV1 video stream decoder (shared library)
Closes: 916333
Changes:
 dav1d (0.5.2-1) unstable; urgency=medium
 .
   * Initial Debian release. (Closes: #916333)
   * Clarify the AOM patent license which is not a copyright
 license but rather an "optional extra" which grants
 users patent rights under some extra conditions.
Checksums-Sha1:
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libdav1d3-dbgsym_0.5.2-1_amd64.deb
 4dddf438e6de6db14a2aaac32544efe6704c499a 315892 libdav1d3_0.5.2-1_amd64.deb
Checksums-Sha256:
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dav1d_0.5.2-1.dsc
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dav1d_0.5.2-1_amd64.deb
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libdav1d-dev_0.5.2-1_amd64.deb
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libdav1d3-dbgsym_0.5.2-1_amd64.deb
 

Bug#946273: marked as done (ITP: arm-compute-library -- Arm Compute Library - A set of Computer Vision and Machine Learning primitives optimised for both Arm CPUs and GPUs)

2020-07-03 Thread Debian Bug Tracking System
Your message dated Fri, 03 Jul 2020 15:00:09 +
with message-id 
and subject line Bug#946273: fixed in arm-compute-library 19.11-1
has caused the Debian Bug report #946273,
regarding ITP: arm-compute-library -- Arm Compute Library - A set of Computer 
Vision  and Machine Learning primitives optimised for both Arm CPUs and GPUs
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


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--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Georgios Pinitas 

* Package name: arm-compute-library
  Version : 19.08
  Upstream Author : Arm Ltd
* URL : https://github.com/ARM-software/ComputeLibrary
* License : MIT
  Programming Lang: C++
  Description : Arm Compute Library - A set of Computer Vision and Machine 
Learning primitives optimised for both Arm CPUs and GPUs

 Arm Compute Library is a software library for computer vision and
 machine learning.  It is a collection of low-level functions
 optimized for Arm CPU and GPU architectures targeted at image
 processing, computer vision, and machine learning.  Arm Compute
 Library is usable as a shared or static library.
 .
 Both 32 and 64-bit variants are supported. (ARM v7, 32-bit, armhf,
 and ARM v8, 64-bit, aarch64/arm64)
IMPORTANT NOTICE: The contents of this email and any attachments are 
confidential and may also be privileged. If you are not the intended recipient, 
please notify the sender immediately and do not disclose the contents to any 
other person, use it for any purpose, or store or copy the information in any 
medium. Thank you.
--- End Message ---
--- Begin Message ---
Source: arm-compute-library
Source-Version: 19.11-1
Done: Compute Library Team 

We believe that the bug you reported is fixed in the latest version of
arm-compute-library, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 946...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Compute Library Team  (supplier of updated 
arm-compute-library package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-BEGIN PGP SIGNED MESSAGE-
Hash: SHA256

Format: 1.8
Date: Thu, 31 Oct 2019 13:18:35 +
Source: arm-compute-library
Binary: libarm-compute-dev libarm-compute-doc libarm-compute17 
libarm-compute17-dbgsym
Architecture: source arm64 all
Version: 19.11-1
Distribution: unstable
Urgency: low
Maintainer: Compute Library Team 
Changed-By: Compute Library Team 
Description:
 libarm-compute-dev - Arm Compute Library - development files
 libarm-compute-doc - Arm Compute Library - documentation
 libarm-compute17 - Arm Compute Library
Closes: 946273
Changes:
 arm-compute-library (19.11-1) unstable; urgency=low
 .
   * Initial release (Closes: #946273)
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Processed: ITP: rosa -- Removal of Spurious Antisense in biological RNA sequences

2020-07-03 Thread Debian Bug Tracking System
Processing commands for cont...@bugs.debian.org:

> owner 964191 Steffen Moeller 
Bug #964191 [wnpp] ITP: rosa -- Removal of Spurious Antisense in biological RNA 
sequences
Owner recorded as Steffen Moeller .
>
End of message, stopping processing here.

Please contact me if you need assistance.
-- 
964191: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=964191
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems



Bug#964192: ITP: python-chess -- a pure Python chess library

2020-07-03 Thread Leopold Palomo-Avellaneda
Package: wnpp
Severity: wishlist
Owner: "Leopold Palomo-Avellaneda" 

* Package name: python-chess
  Version : 0.31.2
  Upstream Author : Niklas Fiekas 
* URL : https://github.com/niklasf/python-chess
* License : GPL-3.0
  Programming Lang: Python
  Description : Pure Python chess library

 python-chess is a pure Python chess library with move generation,
 move validation and support for common formats.

 I would like to maintain/donate to Debian Games Team
.



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Catalonia
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A: Because it messes up the order in which people normally read text.
Q: Why is top-posting such a bad thing?
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Bug#964191: ITP: rosa -- Removal of Spurious Antisense in biological RNA sequences

2020-07-03 Thread Steffen Moeller
Package: wnpp
Severity: wishlist

Subject: ITP: rosa -- Removal of Spurious Antisense in biological RNA sequences
Package: wnpp
Owner: Steffen Moeller 
Severity: wishlist

* Package name: rosa
  Version : 1.0
  Upstream Author : University of Dundee, UK
* URL : https://github.com/bartongroup/RoSA
* License : GPL-3.0+
  Programming Lang: Python
  Description : Removal of Spurious Antisense in biological RNA sequences
 In stranded RNA-Seq experiments we have the opportunity to detect and
 measure antisense transcription, important since antisense transcripts
 impact gene transcription in several different ways. Stranded RNA-Seq
 determines the strand from which an RNA fragment originates, and so can
 be used to identify where antisense transcription may be implicated in
 gene regulation.
 .
 However, spurious antisense reads are often present in experiments, and
 can manifest at levels greater than 1% of sense transcript levels. This
 is enough to disrupt analyses by causing false antisense counts to
 dominate the set of genes with high antisense transcription levels.
 .
 The RoSA (Removal of Spurious Antisense) tool detects the presence of
 high levels of spurious antisense transcripts, by:
  * analysing ERCC spike-in data to find the ratio of antisense:sense
transcripts in the spike-ins; or
  * using antisense and sense counts around splice sites to provide a
set of gene-specific estimates; or
  * both.
 .
 Once RoSA has an estimate of the spurious antisense, expressed as a
 ratio of antisense:sense counts, RoSA will calculate a correction to
 the antisense counts based on the ratio. Where a gene-specific estimate
 is available for a gene, it will be used in preference to the global
 estimate obtained from either spike-ins or spliced reads.

Remark: This package is maintained by Steffen Moeller at
   https://salsa.debian.org/med-team/rosa



Bug#963565: marginphase ready for upload

2020-07-03 Thread Andreas Tille
Hi Pranav,

On Fri, Jul 03, 2020 at 08:45:24AM +0530, Pranav Ballaney wrote:
> Hi Shayan and Andreas,
> I found a paper on marginphase which I've added to upstream/metadata.
> https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1709-0
> 
> I've also written a short description using excerpts from this paper and
> added it to d/control.
> Hope this helps.

This helps definitely!

Thanks a lot

 Andreas.

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