Bug#650394: [Pkg-tigervnc-devel] Bug#650394: ITP: tigervnc -- High-speed Virtual Network Computing (VNC)

[Dominique Belhachemi]

Liang, the package got rejected due to too many lintian warnings. (
http://lists.alioth.debian.org/pipermail/pkg-tigervnc-devel/Week-of-Mon-20160627/000516.html
 )
Could you please have a look and re-upload ?

Bug#650394: [Pkg-tigervnc-devel] Bug#650394: ITP: tigervnc -- High-speed Virtual Network Computing (VNC)

[Dominique Belhachemi]

Which OS are you using?
Could you please test this with sid again? The command 'git-buildpackage'
doesn't exist in sid anymore.

Instead you can use 'gbp buildpackage' from the git-buildpackage package.
BTW, you may need the additional dependency: libdbus-1-dev

-Dominique


On Tue, Apr 12, 2016 at 2:44 PM, Ola Lundqvist  wrote:

> Hi
>
> It should be a normal package build.
> git-buildpackage for example.
>
> // Ola
>

Bug#650394: ITP: tigervnc -- High-speed Virtual Network Computing (VNC)

[Dominique Belhachemi]

Hi, I would like to test the current tigervnc packages.

How do I build the packages after 'git clone' ?
git clone https://anonscm.debian.org/git/pkg-tigervnc/pkg-tigervnc.git

pkg-tigervnc/debian/README.source isn't up-to-date anymore.

Thanks
-Dominique

Bug#780064: ITP: tvc -- genetic variant caller for Ion Torrent sequencing platforms

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist
Owner: Dominique Belhachemi domi...@debian.org

* Package name: tvc
  Version : 4.2.3
  Upstream Author : Ion Torrent
* URL : https://github.com/iontorrent/
* License : GPL-2+ , MIT/X
  Programming Lang: C++
  Description : genetic variant caller for Ion Torrent sequencing
platforms

Bug#668467: ITP: slurm-drmaa -- PSNC DRMAA for Simple Linux Utility for Resource Management (SLURM)

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist

PSNC DRMAA for Simple Linux Utility for Resource Management (SLURM) is
an implementation of the Open Grid Forum DRMAA 1.0 (Distributed
Resource Management Application API) specification for submission and
control of jobs to Simple Linux Utility for Resource Management
(SLURM). Using DRMAA, grid applications builders, portal developers
and ISVs can use the same high-level API to link their software with
different cluster/resource management systems.

Package name: slurm-drmaa
Version : 1.0.4
Upstream Author : Poznan Supercomputing and Networking Center
URL : http://apps.man.poznan.pl/trac/slurm-drmaa
License : GPL
Programming Lang: C
Description   : PSNC DRMAA for Simple Linux Utility for Resource
Management (SLURM)



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Bug#526350: ITP: python-django-celery -- Distributed task queue framework

[Dominique Belhachemi]

Hi,

What is the status of this ITP? Any help needed?

Dominique



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Bug#646181: ITP: calabash -- Bash-style pipelining syntax for Python generators

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist
Owner: Dominique Belhachemi domi...@debian.org

* Package name: calabash
  Version : 0.0.3
  Upstream Author : Zachary Voase
* URL : http://pypi.python.org/pypi/calabash
* License : Public Domain
  Programming Lang: Python
  Description : Bash-style pipelining syntax for Python generators



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Bug#646183: ITP: jsonpipe -- Convert JSON to a UNIX-friendly line-based format

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist
Owner: Dominique Belhachemi domi...@debian.org

* Package name: jsonpipe
  Version : 0.0.7
  Upstream Author : Zachary Voase
* URL : http://pypi.python.org/pypi/jsonpipe
* License : Public Domain
  Programming Lang: Python
  Description : Convert JSON to a UNIX-friendly line-based format

 jsonpipe traverses a JSON object and produces a simple, line-based textual
 format which can be processed by all your UNIX favourites like grep, sed,
 awk, cut and diff. It may also be valuable within
 programming languages---in fact, it was originally conceived as a way of
 writing simple test assertions against JSON output without coupling the tests
 too closely to the specific structure used.



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Bug#646179: ITP: django-tastypie -- webservice API framework for Django

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist
Owner: Dominique Belhachemi domi...@debian.org

* Package name: django-tastypie
  Version : 0.9.7
  Upstream Author : Daniel Lindsley
* URL : http://django-tastypie.readthedocs.org/en/latest/index.html
* License : BSD
  Programming Lang: Python
  Description : webservice API framework for Django

 Tastypie is an webservice API framework for Django. It provides a
 convenient, yet powerful and highly customizable, abstraction for
 creating REST-style interfaces.



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Bug#644882: ITP: pbs-drmaa -- DRMAA for Torque/PBS Pro

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist
Owner: Dominique Belhachemi domi...@debian.org

DRMAA for Torque/PBS Pro library is an implementation of OGF DRMAA 1.0
(Distributed Resource Management Application API) specification for the
submission of jobs to Torque and PBS Professional systems.

Package name: pbs-drmaa
Version : 1.0.9
Upstream Author : Poznan Supercomputing and Networking Center
URL : http://apps.man.poznan.pl/trac/pbs-drmaa/
License : GPL
Programming Lang: C
Description : DRMAA for Torque/PBS Pro



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Bug#622191: O: z88 -- Finite Element Analysis Program

[Dominique Belhachemi]

Package: wnpp
Severity: normal

I no longer use this package and therefore orphan it.




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Bug#601180: ITP: ctk -- software for medical image analysis

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist
X-Debbugs-CC: debian-...@lists.debian.org

Package name: ctk
Upstream Author : ctk-developers ctk-develop...@commontk.org
URL : http://www.commontk.org/
License : Apache License, Version 2.0
Description : software to provide support code for medical image 
  analysis, surgical navigation, and related projects.

The goals of CTK are as follows:

  * Provide a unified set of basic programming constructs that are
useful for medical imaging applications development
  * Facilitate the exchange and combination of code and data
  * Document, integrate, and adapt successful solutions
  * Avoid the duplication of code and data
  * Continuously extend to new tasks within the scope of the toolkit
(medical imaging) without burdening existing tasks






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Bug#516333: ITP: z88 -- Finite Element Analysis Program

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist

Package name : z88
Version : 12.0.1
Upstream Author : Frank Rieg
URL : http://z88.uni-bayreuth.de/
License : GPL-2 or any later version
Description : Finite Element Analysis

Z88 is a fast, powerful and compact Finite Element Analysis Program. It
features 20 finite element types covering plane stress, plate bending,
axial symmetric structures and spacial structures up to 20-node
Serendipity hexahedrons. Z88 comes with a user-friendly interface, a
powerful mesh generator, a DXF-converter, two plot programs and, of
course, two powerful solvers. Import of COSMOS files from Pro/ENGINEER
and Pro/MECHANICA is supported.

-Dominique





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Bug#509309: ITP: openigtlink - network protocol intended for trackers, robots and other devices

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist
Owner: Dominique Belhachemi domi...@cs.tu-berlin.de


  Package name: openigtlink
  Version : 1.0.0
  Upstream Author : Junichi Tokuda tokuda at bwh.harvard.edu et al.
  URL : http://www.na-mic.org/Wiki/index.php/OpenIGTLink
  License : The BSD License
  Copyright   : ©2008 Insight SoftwareConsortium
  Programming Lang: C++
  Description : OpenIGTLink is a simple network protocol intended for
trackers, robots and other devices to send data to the
main application. Some devices might also accept
commands.

Bug#500841: ITP: slicer -- software package for visualization and image analysis

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist
Owner: Dominique Belhachemi [EMAIL PROTECTED]


  Package name: slicer
  Version : 3.2.0
  Upstream Author : Steve Pieper pieper at bwh.harvard.edu et al.
  URL : http://www.slicer.org/
  License : BSD style license, with extensions
  Programming Lang: C++
  Description : software package for visualization and image analysis

Slicer, or 3D Slicer, is a software package for visualization and
image analysis.
..
Features include:
..
  Sophisticated complex visualization capabilities
  Scene snapshots allow capture of all visualization parameters of a scene
  Extensive support for IGT and diffusion tensor imaging
  Advanced registration / data fusion capabilities
  Comprehensive I/O capabilities 



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Bug#498646: ITP: itsol -- iterative solvers for general sparse linear systems of equations

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist
Owner: Dominique Belhachemi [EMAIL PROTECTED]

  Package name: itsol
  Version : 1.0.0
  Upstream Author : Yousef Saad saad at cs.umn.edu
  URL : http://www-users.cs.umn.edu/~saad/software/ITSOL/
  License : GPL-2+
  Programming Lang: C, Fortran
  Description : iterative solvers for general sparse linear systems of 
equations

ITSOL is a library of iterative solvers for general sparse linear systems of
equations. ITSOL can be viewed as an extension of the itsol module in SPARSKIT.
It is written in C and offers a selection of recently developed preconditioners.
The preconditioner suite includes:

* ILUK (ILU preconditioner with level of fill)
* ILUT (ILU preconditioner with threshold)
* ILUC (Crout version of ILUT)
* VBILUK (variable block preconditioner with level of fill)
  - with automatic block detection
* VBILUT (variable block preconditioner with threshold)
  - with automatic block detection
* ARMS (Algebraic Recursive Multilevel Solvers)
  - includes actually several methods, In particular
the standard ARMS and the ddPQ version
which uses nonsymmetric permutations



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Bug#498653: ITP: sparskit -- A basic tool-kit for sparse matrix computations

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist
Owner: Dominique Belhachemi [EMAIL PROTECTED]

  Package name: sparskit
  Version : 2.0.0
  Upstream Author : Yousef Saad saad at cs.umn.edu
  URL : 
http://www-users.cs.umn.edu/~saad/software/SPARSKIT/sparskit.html
  License : LGPL
  Programming Lang: Fortran
  Description : A basic tool-kit for sparse matrix computations

SPARSKIT a basic tool-kit for sparse matrix computations. Sparskit is a
general purpose FORTRAN-77 library for sparse matrix computations. It
has been gathered over several years and includes some of the most useful
tools for developing and implementing sparse matrix techniques,
particularly for iterative solvers. If you need a simple routine for
doing a sparse matrix operation (e.g., adding two sparse matrices, or
reordering a sparse matrix) it is likely to be available in SPARSKIT.
SPARSKIT also contains most of the iterative accelarators and a number
of efficient preconditioners. 



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Bug#490627: ITP: igstk -- development platform for image-guided surgery applications

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist
Owner: Dominique Belhachemi [EMAIL PROTECTED]


* Package name: igstk
  Version : 3.0.0
  Upstream Author : IGSTK-Developer [EMAIL PROTECTED]
* URL : http://www.igstk.org/
* License : BSD
  Programming Lang: C++
  Description : development platform for image-guided surgery applications

The Image-Guided Surgery Toolkit (IGstk: pronounced IGStick) is a high-level 
component-based 
framework providing common functionality for image-guided surgery applications.
This software framework consists of a set of high-level components integrated 
with other 
low-level open source software libraries and application programming interfaces 
(API) from 
hardware vendors.
The cornerstone of IGstk is robustness. IGstk provides the following high-level 
functionality: 
Ability to read and display medical images including CT and MRI in DICOM format.
An interface to common tracking hardware. A graphical user interface and 
visualization
capability including a four-quadrant view (axial, sagittal, coronal, and 3D) as 
well
as a multi-slice axial view (from 1 by 1 to many by many such as 10 by 10).
Registration: point based registration and a means for selecting these points. 
Robust common 
internal software services for logging, exception-handling and problem 
resolution.

-- System Information:
Debian Release: lenny/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: i386 (i686)

Kernel: Linux 2.6.25-2-686 (SMP w/1 CPU core)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash



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Bug#473045: ITP: kwwidgets -- Cross-Platform GUI Toolkit

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist
Owner: Dominique Belhachemi [EMAIL PROTECTED]


* Package name: kwwidgets
  Version : 1.1.0
  Upstream Author : ...
* URL : http://www.kwwidgets.org/
* License : BSD-style open-license http://www.kitware.com/Copyright.htm
  Programming Lang: C++,
  Description : Cross-Platform GUI Toolkit

KWWidgets is a free, cross-platform and open-license GUI Toolkit.


-- System Information:
Debian Release: lenny/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: i386 (i686)

Kernel: Linux 2.6.24-1-686 (SMP w/1 CPU core)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash



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Bug#473044: ITP: teem -- Tools to process and visualize scientific data and images

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist
Owner: Dominique Belhachemi [EMAIL PROTECTED]


* Package name: teem
  Version : 1.10.0
  Upstream Author : Gordon Kindlmann
* URL : http://teem.sourceforge.net/
* License : LGPL
  Programming Lang: C
  Description : Tools to process and visualize scientific data and images

Teem is a coordinated group of libraries for representing, processing, 
and visualizing scientific raster data. Teem includes command-line tools 
that permit the library functions to be quickly applied to files and 
streams, without having to write any code. The most important and useful 
libraries in Teem are:

* Nrrd (and the unu command-line tool on top of it) supports a range of 
operations for transforming N-dimensional raster data (resample, crop, slice, 
project, histogram, etc.), as well as the NRRD file format for storing arrays 
and their meta-information.
* Gage: fast convolution-based measurements at arbitrary point locations in 
volume datasets (scalar, vector, tensor, etc.)
* Mite: a multi-threaded ray-casting volume render with transfer functions 
based on any quantity Gage can measure
* Ten: for estimating, processing, and visualizing diffusion tensor fields, 
including fiber tractography methods. 


-- System Information:
Debian Release: lenny/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: i386 (i686)

Kernel: Linux 2.6.24-1-686 (SMP w/1 CPU core)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash



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Bug#455064: ITP: sofa-framework -- SOFA is an Open Source framework primarily targeted at real-time simulation, with an emphasis on medical simulation.

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist
Owner: Dominique Belhachemi [EMAIL PROTECTED]


* Package name: sofa-framework
  Version : 1.0.2
  Upstream Author : INRIA
* URL : http://www.sofa-framework.org
* License : (GPL, LGPL)
  Programming Lang: (C, C++,)
  Description : SOFA is an Open Source framework primarily targeted at 
real-time simulation, with an emphasis on medical simulation.

It is mostly intended for the research community to help develop newer 
algorithms, but can also be used as an efficient prototyping tool. Based 
on an advanced software architecture, it allows to:

* create complex and evolving simulations by combining new algorithms with 
algorithms already included in SOFA
* modify most parameters of the simulation – deformable behavior, surface 
representation, solver, constraints, collision algorithm, etc. – by simply 
editing an XML file
* build complex models from simpler ones using a scene-graph description
* efficiently simulate the dynamics of interacting objects using abstract 
equation solvers
* reuse and easily compare a variety of available methods 


-- System Information:
Debian Release: lenny/sid
  APT prefers unstable
  APT policy: (500, 'unstable')
Architecture: i386 (i686)

Kernel: Linux 2.6.22-2-686 (SMP w/1 CPU core)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash



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Bug#409913: Amide

[Dominique Belhachemi]

Hi Yaroslav,

please have a look at my package again.
http://user.cs.tu-berlin.de/~domibel/amide/

I disabled the volpack and libfame packages because of the license
uncertainties. Because of this the program is not very powerful.
But better than nothing.

Is it ready for a NMU?

Dominique



On Thu, 2007-04-19 at 12:07 -0400, Yaroslav Halchenko wrote:
 Cool - Thank you lots! Are you going to pursue this package
 further to make it Debian ready?
 What I mean is  (from the first glance over it)
 1. remove *.ex which are not used
 2. adjust descriptions
 3. clean up rules
 4. setup debian/{watch,menu}
 5. any plans to package volpack to get amide working with it too?
 
 P.S. I am ccing another guy who is the brain imaging software packaging
 guru, thus might be interested in and thus able to help ;-)
 



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Bug#409913: any progress? need help?

[Dominique Belhachemi]

Hi Yaroslav,

thank you for your email regarding amide-packaging.

You can find the package here. (I didnt work for a while)
http://user.cs.tu-berlin.de/~domibel/amide/

If you have questions or suggestions dont hesitate to contact me.

Cheers
Dominique




On Thu, 2007-04-19 at 10:18 -0400, Yaroslav Halchenko wrote:
 Hi Dominique
 
 Any progress on packaging? Any preliminary packages? Do you still have
 intent to package it? Any help needed?  Need sponsorship? ;-)
 


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Bug#409913: ITP: amide -- tool for viewing, analyzing and registering volumetric medical imaging data sets

[Dominique Belhachemi]

Package: wnpp
Severity: wishlist


* Package name : amide
* URL  : http://amide.sourceforge.net/
* License  : GPL

Description : AMIDE is a tool for viewing and analyzing medical image
data sets.
It's capabilities include the simultaneous handling of multiple data
sets imported from a variety of file formats, image fusion, 3D region
of interest drawing and analysis, volume rendering, and rigid body
alignments.




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