Bug#1056701: ITP: roc-toolkit -- real-time audio streaming over the network

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Dylan Aïssi 
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-multime...@lists.debian.org

* Package name: roc-toolkit
* URL: https://roc-streaming.org/
* License: MPL-2.0

Roc is a network transport, highly specialized for the real-time streaming use
case. The user writes the stream to the one end and reads it from another end,
and Roc deals with all the complexity of the task of delivering data in time
and with no loss. Encoding, decoding, adjusting rates, restoring losses - all
these are performed transparently under the hood.

This package is maintained by Debian Multimedia Team at:
  https://salsa.debian.org/multimedia-team/roc-toolkit

Bug#933354: RFC: onnxruntime packaging

[Dylan Aïssi]

Hello,

I have finalized [1] the package of onnxruntime and have sent it to the
NEW queue [2]. I only enabled features I need. A review and/or improvements
are welcome :-).

Best,
Dylan

[1] https://salsa.debian.org/deeplearning-team/onnxruntime
[2] https://ftp-master.debian.org/new/onnxruntime_1.12.1+dfsg-1.html

Bug#1031002: ITP: libavtp -- Audio Video Transport Protocol (AVTP)

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Dylan Aïssi 
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-multime...@lists.debian.org

* Package name: libavtp
* URL: https://github.com/Avnu/libavtp
* License: BSD-3-clause

Audio Video Transport Protocol (AVTP) specified in IEEE 1722-2016 spec.

Remark: This package is maintained by Debian Multimedia Team at:
  https://salsa.debian.org/multimedia-team/libavtp

Bug#888078: RFA: easyprocess

[Dylan Aïssi]

Hello Malik,

On Fri, 11 Nov 2022 19:19:34 +0100 Malik  wrote:
>
> I would also like to help to maintain this package, is it still open to be
> maintained?
>

I am not the previous maintainer of easyprocess, but the RFA is still
open so feel free to do the work without asking :) and then make
enough kindly noise to get it merged/uploaded if you lack permissions.
BTW, I left a comment on your MR for easyprocess.

Dylan

Bug#1021532: ITP: liblc3 -- Low Complexity Communication Codec (LC3)

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Dylan Aïssi 
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-multime...@lists.debian.org

* Package name: liblc3
  Version: 1.0.1
* URL : https://github.com/google/liblc3
* License : Apache-2.0
  Description: Low Complexity Communication Codec

 LC3 is an efficient low latency audio codec. This codec is required
to add Bluetooth LE Audio support to pipewire.

Remark: This package is maintained by Debian Multimedia Team at:
  https://salsa.debian.org/multimedia-team/liblc3

Bug#1007108: Fwd: ITP: qpwgraph -- User interface for controlling the PipeWire Graph

[Dylan Aïssi]

Hi Chris,

Le sam. 12 mars 2022 à 11:39, Christopher Obbard
 a écrit :
>
> > - salsa-ci.yml is not needed anymore as we can directly use the config
> > file from the salsa team:
> >> https://salsa.debian.org/salsa-ci-team/pipeline/blob/master/README.md#basic-use
>
> Right, I initially used dh_make which generated that salsa-ci.yml file.
> I've now removed it from the repo.
>
> Do you think it is worth opening a bug/merge request there to either
> remove the generated file or add a comment about it not being needed any
> more?

This file can be useful is you want to custom the salsa pipeline, but
keeping the default one is not needed. dh_make is doing the right
thing by proposing a template of the pipeline config file.

> > - Is there a specific reason to target the upstream dev website
> > instead of the gitlab repo in the d/watch file? I guess he can forget
> > to update it contrary to its gitlab repo.
>
> I did think about that, but most other packages I have seen target the
> upstream's website in the watch file.
>
> For the record, the upstream tarball on the author's website doesn't
> include the gitlab-ci file or some other bits, so they're not the same
> archive as what you would download from gitlab.

Okay it is up to you :-) Targeting github or gitlab is not a problem,
a lot of packages do it.

> > - The history of your master and upstream branches is uncommon, I
> > think you cloned the upstream repo and then imported the upstream
> > tarball with gbp? It would be cleaner to just create these branches
> > using gbp import-orig.
>
> Right, I wanted to experiment with keeping the upstream git history
> (like the pipewire packaging) rather than just importing all of the
> files in a single commit like how import-orig would in the usual case. I
> did that by:
>
> $ git init
> $ git remote add upstream g...@gitlab.freedesktop.org:rncbc/qpwgraph.git
> $ git checkout -b upstream v0.2.2
> $ gbp import-orig --upstream-vcs-tag v0.2.2 --pristine-tar
> ../qpwgraph-0.2.2.tar.gz

Both way are fine, it is up to the preferences of the maintainer or to
the team policy. If you want to keep the upstream git history, you
don't need to use gbp import-orig, this modifies the upstream branch
and we should not do that :-).
But, you can populate the pristine-tar branch with:
$ pristine-tar commit ../qpwgraph-0.2.2.tar.gz

I just sent the package to the NEW queue. Thanks for your work!

Best,
Dylan

Bug#1007108: Fwd: ITP: qpwgraph -- User interface for controlling the PipeWire Graph

[Dylan Aïssi]

Hi Chris,

Thanks for your packaging!

I had a look at it and of course it is good, nothing that could
prevent me to upload it. Just to nitpick:

- salsa-ci.yml is not needed anymore as we can directly use the config
file from the salsa team:
> https://salsa.debian.org/salsa-ci-team/pipeline/blob/master/README.md#basic-use

- If you plan to maintain this package under the umbrella of the
Debian Multimedia Team, you need to move the git repo under the team
namespace and update the d/control fields accordingly. Just created a
repo for you:
> salsa.debian.org:multimedia-team/qpwgraph.git

- Is there a specific reason to target the upstream dev website
instead of the gitlab repo in the d/watch file? I guess he can forget
to update it contrary to its gitlab repo.

- The history of your master and upstream branches is uncommon, I
think you cloned the upstream repo and then imported the upstream
tarball with gbp? It would be cleaner to just create these branches
using gbp import-orig.

Best,
Dylan

Bug#1007108: ITP: qpwgraph -- User interface for controlling the PipeWire Graph

[Dylan Aïssi]

Hi Christopher,

If you need a sponsor for this package, you know how to ping me ;-)

Best,
Dylan

Bug#997001: ITP: pipewire-media-session -- PipeWire example session manager

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

Package name: pipewire-media-session
URL: https://gitlab.freedesktop.org/pipewire/media-session/
License: MIT
Description: PipeWire example session manager
 PipeWire Media Session is an example session manager for PipeWire.
 .
 Note that it is recommended the use of WirePlumber instead.

It was previously part of pipewire package itself, but it moved to a
separate module to accelerate its deprecation in favor of WirePlumber.

Bug#993237: ITP: svt-av1 -- Scalable Video Technology for AV1

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Dylan Aïssi 
X-Debbugs-Cc: debian-de...@lists.debian.org, debian-multime...@lists.debian.org

* Package name: svt-av1
  Version: 0.8.7
* URL : https://gitlab.com/AOMediaCodec/SVT-AV1/
* License : BSD-2-clause
  Description: Scalable Video Technology for AV1 (SVT-AV1 Encoder and Decoder)
The Scalable Video Technology for AV1 (SVT-AV1 Encoder and Decoder) is an
AV1-compliant encoder/decoder library core. The SVT-AV1 encoder development
is a work-in-progress targeting performance levels applicable to
both VOD and
Live encoding / transcoding video applications. The SVT-AV1 decoder
implementation is targeting future codec research activities.

Remark: This package is maintained by Debian Multimedia Team at
   https://salsa.debian.org/multimedia-team/svt-av1

Bug#988689: ITP: 7zip -- 7-Zip file archiver

[Dylan Aïssi]

Hi Yokota,

Le mar. 22 juin 2021 à 01:30, yokota  a écrit :
>
> My changes are held on "experimental" branch. Please marge it.
> Or, give me write permission to "master" branch. Because "master"
> branch is protected and can only writable by project maintainer.
> Check https://salsa.debian.org/help/user/project/protected_branches.md
> for this issue.

Thanks! I have merged your branch and granted you push permission to
the master branch.

I have reverted one of your commit [1], because pre-dependency should
be discussed on debian-devel mailing list [2] and it is not used by
7zip. So, I don't want to introduce a pre-deps by mistake ;-)
I just uploaded it to NEW. Feel free to ping me if you need to upload
a new version of 7zip.

And thanks again for your work on 7zip!

Best,
Dylan

[1] 
https://salsa.debian.org/debian/7zip/-/commit/10f56c7a60c6e6e485ff9ed7b6e8704453bc7c98
[2] 
https://www.debian.org/doc/debian-policy/ch-relationships.html#binary-dependencies-depends-recommends-suggests-enhances-pre-depends

Bug#988689: ITP: 7zip -- 7-Zip file archiver

[Dylan Aïssi]

Hi,

I started to work on 7zip [1] before realizing you already started a
package of it.
Are you still working on it? Should we combine our efforts to finish
the package?

Best,
Dylan

[1] https://salsa.debian.org/debian/7zip

Bug#989601: ITP: vulkan-volk -- Meta-loader for Vulkan API

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

Package name: vulkan-volk
URL: https://github.com/zeux/volk
License: MIT
Description: Meta-loader for Vulkan API
 Volk allows you to dynamically load entrypoints required to use Vulkan
 without linking to vulkan-1.dll or statically linking Vulkan loader.
 Additionally, volk simplifies the use of Vulkan extensions by automatically
 loading all associated entrypoints. Finally, volk enables loading Vulkan
 entrypoints directly from the driver which can increase performance by
 skipping loader dispatch overhead.

Bug#989464: ITP: gfxreconstruct -- Improved version of LunarG's vktrace software

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

Package name: gfxreconstruct
Upstream Author : LunarG
URL: https://github.com/LunarG/gfxreconstruct
License: MIT
Description: Improved version of LunarG's vktrace software
 The primary goal for the GFXReconstruct project is to create an improved
 version of LunarG's vktrace software for capture and replay of Vulkan API
 calls. As development progresses, existing vktrace functionality such as
 trimming and client-server mode will be integrated with the GFXReconstruct
 codebase. When GFXReconstruct reaches feature parity with vktrace, vktrace
 will be deprecated in favor of GFXReconstruct.

Bug#973805: ITP: r-bioc-tcgabiolinksgui.data -- Data for the TCGAbiolinksGUI package

[Dylan Aïssi]

Package: wnpp
Severity: wishlist

Subject: ITP: r-bioc-tcgabiolinksgui.data -- Data for the TCGAbiolinksGUI 
package
Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-bioc-tcgabiolinksgui.data
  Version : 1.10.0
  Upstream Author : Tiago Chedraoui Silva
* URL : 
https://bioconductor.org/packages/data/experiment/TCGAbiolinksGUI.data/
* License : GPL-3
  Programming Lang: GNU R
  Description : Data for the TCGAbiolinksGUI package
 Supporting data for the TCGAbiolinksGUI package.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-bioc-tcgabiolinksgui.data

Bug#969943: ITP: r-cran-isospecr -- GNU R IsoSpec Algorithm

[Dylan Aïssi]

Package: wnpp
Severity: wishlist

Subject: ITP: r-cran-isospecr -- GNU R IsoSpec Algorithm
Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-isospecr
  Version : 2.1.2
  Upstream Author : Mateusz Krzysztof Lacki and Michal Startek
* URL : https://cran.r-project.org/package=IsoSpecR
* License : BSD-2-clause
  Programming Lang: GNU R
  Description : GNU R IsoSpec Algorithm
 IsoSpec is a fine structure calculator used for obtaining the most
 probable masses of a chemical compound given the frequencies of the composing
 isotopes and their masses. It finds the smallest set of isotopologues with
 a given probability. The probability is assumed to be that of the product of
 multinomial distributions, each corresponding to one particular element and
 parametrized by the frequencies of finding these elements in nature. These
 numbers are supplied by IUPAC - the International Union of Pure and Applied
 Chemistry.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-isospecr

Bug#967110: ITP: bpytop -- Resource monitor that shows usage and stats

[Dylan Aïssi]

Package: wnpp
Severity: wishlist

Subject: ITP: bpytop -- Resource monitor that shows usage and stats
Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: bpytop
  Version : 1.0.2
  Upstream Author : Aristocratos
* URL : https://github.com/aristocratos/bpytop
* License : Apache-2.0
  Programming Lang: Python
  Description : Resource monitor that shows usage and stats
 Resource monitor that shows usage and stats for processor,
 memory, disks, network and processes. Python port of bashtop.

Remark: This package is maintained at:
   https://salsa.debian.org/debian/bpytop

Bug#964191: RoSA ante portas - happily pass this on

[Dylan Aïssi]

Le sam. 4 juil. 2020 à 11:27, Andreas Tille  a écrit :
>
> While I think your changes are pretty sensible it does not solve the
> problem.
>

:-( I will investigate this again later today


Dylan

Bug#964191: RoSA ante portas - happily pass this on

[Dylan Aïssi]

Hi Andreas,

Le sam. 4 juil. 2020 à 09:43, Andreas Tille  a écrit :
> @Dylan: Any idea how to fix
>
> E: r-other-rosa: requires-r-api

\o/ this tag is finally useful :-)

I pushed a change that should fix this issue. I was not able to test
because r-cran-lsd is not available (still in NEW). Could you try this
change for me?

Best,
Dylan

Bug#916333: ITP: dav1d -- fast and small AV1 video stream decoder

[Dylan Aïssi]

Hi,

Le jeu. 2 juil. 2020 à 10:34, Sebastian Ramacher
 a écrit :
> > Did you try re-upload since the rejection?  If not, why not?
> >
> > If that was the only reason given by ftpmasters for rejecting, then I
> > would suggest to simply a) make sure that the licensing/patenting
> > situation as you understand it is explicitly laid out in
> > debian/copyright file, and then b) re-release the package.
>
> I'm not the maintainer, but it is currently in NEW with d/changelog
> fixed.

Yep, I fixed it with the help of James Cowgill (he maintains aom with
the same patent license) and re-upload the new version in January (~ 2
weeks after the reject).

>
> > When re-uploaded, I can suggest to try nudge ftpmasters by logging into
> > irc channel #debian-ftp and kindly request a review of the package.
>
> I've done that repeatedly without any progress.
>

I did not ping them about this package but if Sebastian already tried
to do it without any success, I guess I will not have more luck.

Since the version 0.7.0 (the last version in NEW queue), there is no
longer any files with Alliance-for-Open-Media-Patent-License-1.0 in
their header. This AOM-Patent-License-1.0 is only provided in
doc/PATENTS, so maybe this will simplify the approval.

Best,
Dylan

Bug#916333: ITP: dav1d -- fast and small AV1 video stream decoder

[Dylan Aïssi]

Hi,

(Please keep #916333 in CC ;-)

Le jeu. 2 juil. 2020 à 09:44, Vasyl Gello  a écrit :
> So you have no objection against me doing a team upload and picking it for my 
> kodi work?
> Jean-Batiste Kempf from VideoLAN also is very motivated to have dav1d in 
> Debian, so I will talk with Mattia & maybe even reach Joerg
> on that matter.

Feel free to do a team upload, but dav1d is still not in Debian and I
don't know if it will be accepted one day... So, an upload now will
have no real effect (at least for Debian). This situation is annoying
because the reject was only about the AOM patent license but we
already have the aom package in Debian with the same license.

Best,
Dylan

Bug#916333: ITP: dav1d -- fast and small AV1 video stream decoder

[Dylan Aïssi]

Hi Vasyl,

On Tue, 30 Jun 2020 03:38:20 + Vasyl Gello  wrote:
> There is a new upstream release 0.7.1 for a week or so.
> Can you please package it?

dav1d is in the NEW queue since 1,5 years. It was rejected after 1
year in the NEW queue and I still don't have news about the last
attempt. I am losing motivation for this package, I will probably
convert this ITP to RFP...

Best,
Dylan

Bug#960375: ITP: r-cran-rstatix -- Pipe-Friendly Framework for Basic Statistical Tests

[Dylan Aïssi]

Package: wnpp
Severity: wishlist

Subject: ITP: r-cran-rstatix -- Pipe-Friendly Framework for Basic Statistical 
Tests
Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-rstatix
  Version : 0.5.0
  Upstream Author : Alboukadel Kassambara
* URL : https://cran.r-project.org/package=rstatix
* License : GPL-2
  Programming Lang: GNU R
  Description : Pipe-Friendly Framework for Basic Statistical Tests
 Provides a simple and intuitive pipe-friendly framework, coherent with
 the 'tidyverse' design philosophy, for performing basic statistical
 tests, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and
 correlation analyses. The output of each test is automatically
 transformed into a tidy data frame to facilitate visualization.
 Additional functions are available for reshaping, reordering,
 manipulating and visualizing correlation matrix. Functions are also
 included to facilitate the analysis of factorial experiments, including
 purely 'within-Ss' designs (repeated measures), purely 'between-Ss'
 designs, and mixed 'within-and-between-Ss' designs. It's also possible
 to compute several effect size metrics, including "eta squared" for
 ANOVA, "Cohen's d" for t-test and 'Cramer V' for the association between
 categorical variables. The package contains helper functions for
 identifying univariate and multivariate outliers, assessing normality
 and homogeneity of variances.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-rstatix

Bug#958702: bashtop

[Dylan Aïssi]

Hi Jonathan,

The VCS fields on the ITP are wrong, the repo is there:
> https://salsa.debian.org/debian/bashtop

And bashtop (outdated) is in the NEW queue.
> https://ftp-master.debian.org/new/bashtop_0.8.5-1.html

Feel free to add yourself as comaintainer ;-)

Best,
Dylan

Bug#958702: ITP: bashtop -- Resource monitor that shows usage and stats

[Dylan Aïssi]

Package: wnpp
Severity: wishlist

Subject: ITP: bashtop -- Resource monitor that shows usage and stats
Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: bashtop
  Version : 0.8.4
  Upstream Author : Aristocratos
* URL : https://github.com/aristocratos/bashtop
* License : Apache-2.0
  Programming Lang: (C, C++, C#, Perl, Python, etc.)
  Description : Resource monitor that shows usage and stats
 Resource monitor that shows usage and stats for processor,
 memory, disks, network and processes.

Remark: This package is maintained by Dylan Aïssi at
   https://salsa.debian.org/daissi/bashtop

Bug#958309: ITP: r-bioc-bioccheck -- Bioconductor-specific package checks

[Dylan Aïssi]

Package: wnpp
Severity: wishlist

Subject: ITP: r-bioc-bioccheck -- Bioconductor-specific package checks
Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-bioc-bioccheck
  Version : 1.22.0
  Upstream Author : Copyright: (FIXME: year)-2019 Bioconductor Package 
Maintainer,
* URL : https://bioconductor.org/packages/BiocCheck/
* License : Artistic-2.0
  Programming Lang: GNU R
  Description : Bioconductor-specific package checks
 Executes Bioconductor-specific package checks.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-bioc-bioccheck

Bug#958308: ITP: r-bioc-biocviews -- Categorized views of R package repositories

[Dylan Aïssi]

Package: wnpp
Severity: wishlist

Subject: ITP: r-bioc-biocviews -- Categorized views of R package repositories
Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-bioc-biocviews
  Version : 1.54.0
  Upstream Author : Copyright: (FIXME: year)-2019 VJ Carey 
,
* URL : https://bioconductor.org/packages/biocViews/
* License : Artistic-2.0
  Programming Lang: GNU R
  Description : Categorized views of R package repositories
 Infrastructure to support 'views' used to classify
 Bioconductor packages. 'biocViews' are directed acyclic
 graphs of terms from a controlled vocabulary. There are three
 major classifications, corresponding to 'software', 'annotation',
 and 'experiment data' packages.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-bioc-biocviews

Bug#956716: ITP: r-cran-rematch2 -- Tidy Output from Regular Expression Matching

[Dylan Aïssi]

Package: wnpp
Severity: wishlist

Subject: ITP: r-cran-rematch2 -- Tidy Output from Regular Expression Matching
Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-rematch2
  Version : 2.1.1
  Upstream Author : Mango Solutions, Gábor Csárdi, Matthew Lincoln
* URL : https://cran.r-project.org/package=rematch2
* License : MIT
  Programming Lang: GNU R
  Description : Tidy Output from Regular Expression Matching
 Wrappers on 'regexpr' and 'gregexpr' to return the match
 results in tidy data frames.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-rematch2

Bug#955274: ITP: r-bioc-wrench -- GNU R wrench normalization for sparse count data

[Dylan Aïssi]

Package: wnpp
Severity: wishlist

Subject: ITP: r-bioc-wrench -- GNU R wrench normalization for sparse count data
Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-bioc-wrench
  Version : 1.4.0
  Upstream Author : Senthil Kumar Muthiah,
* URL : https://bioconductor.org/packages/Wrench/
* License : Artistic-2.0
  Programming Lang: GNU R
  Description : GNU R wrench normalization for sparse count data
 Wrench is a package for normalization sparse genomic count data, like
 that arising from 16s metagenomic surveys.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-bioc-wrench

Bug#954853: ITP: r-cran-isoband -- Generate Isolines and Isobands from Regularly Spaced Elevation

[Dylan Aïssi]

Package: wnpp
Severity: wishlist

Subject: ITP: r-cran-isoband -- Generate Isolines and Isobands from Regularly 
Spaced Elevation
Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-isoband
  Version : 0.2.0
  Upstream Author : Claus Wilke
* URL : https://cran.r-project.org/package=isoband
* License : MIT
  Programming Lang: GNU R
  Description : Generate Isolines and Isobands from Regularly Spaced 
Elevation
 Grids A fast C++ implementation to generate contour lines
 (isolines) and contour polygons (isobands) from regularly spaced
 grids containing elevation data.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-isoband

Bug#949465: ITP: r-cran-tinytest -- Lightweight and Feature Complete Unit Testing Framework

[Dylan Aïssi]

Package: wnpp
Severity: wishlist

Subject: ITP: r-cran-tinytest -- Lightweight and Feature Complete Unit Testing 
Framework
Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-tinytest
  Version : 1.1.0
  Upstream Author : Mark van der Loo
* URL : https://cran.r-project.org/package=tinytest
* License : GPL-3
  Programming Lang: GNU R
  Description : Lightweight and Feature Complete Unit Testing Framework
 Provides a lightweight (zero-dependency) and easy to use
 unit testing framework. Main features: install tests with
 the package. Test results are treated as data that can be stored and
 manipulated. Test files are R scripts interspersed with test commands, that
 can be programmed over. Fully automated build-install-test sequence for
 packages. Skip tests when not run locally (e.g. on CRAN). Flexible and
 configurable output printing. Compare computed output with output stored
 with the package. Run tests in parallel. Extensible by other packages.
 Report side effects.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-tinytest

Bug#948654: ITP: thesias -- Testing Haplotype Effects In Association Studies

[Dylan Aïssi]

Package: wnpp
Owner: Debian Med Packaging Team 
Severity: wishlist

Package name: thesias
Upstream Author : David-Alexandre Trégouët
URL: https://github.com/daissi/thesias
License: GPL-3+
Description: Testing Haplotype Effects In Association Studies
 The objectif of the THESIAS program is to performed haplotype-based
 association analysis in unrelated individuals. This program is based
 on the maximum likelihood model described in Tregouet et al. 2002
 (Hum Mol Genet 2002,11: 2015-2023) and is linked to the SEM algorithm
 (Tregouet et al. Ann Hum Genet 2004,68: 165-177).
 THESIAS allows one to simultaneous estimate haplotype frequencies
 and their associate effects on the phenotype of interest.
 In this new THESIAS release, quantitative, qualitative (logistic
 and matched-pair analysis), categorical and survival outcomes can be
 studied. X-linked haplotype analysis is also feasible.
 Covariate-adjusted haplotype effects as well as haplotype x covariate
 interactions can also be investigated.

This package will be maintained by the Debian Med Packaging Team at:
https://salsa.debian.org/med-team/thesias

Bug#916333: dav1d_0.5.2-1_amd64.changes REJECTED

[Dylan Aïssi]

Hi,

Le mar. 31 déc. 2019 à 21:50, James Cowgill  a écrit :
>
> The AOM patent license is not a copyright license but rather an
> "optional extra" which grants users patent rights under some extra
> conditions. You would usually use it along with an additional license to
> cover all the copyright related parts which the DFSG is more concerned
> about.
>
> In aom, I put the patent license in a "Comment" section at the top and
> don't mention it in any "License" clauses which I think makes this
> distinction between copyright and patent issues a bit clearer.

Thanks James for this explanation!

The files from the package dav1d which are "covered" by the "optional
extra" AOM patent license have exactly the same header as these from
the package aom. So, I will write the d/copyright file like you did
for aom. I hope this will be fine.

Best,
Dylan

Bug#948005: ITP: --

[Dylan Aïssi]

Package: wnpp
Severity: wishlist

Subject: ITP:  -- 
Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: 
  Version : 
  Upstream Author : 
* URL : 
* License : 
  Programming Lang: (C, C++, C#, Perl, Python, etc.)
  Description : 


Remark: This package is maintained by  at
   

Bug#948007: ITP: r-cran-modeldata -- Data Sets Used Useful for Modeling Packages

[Dylan Aïssi]

Package: wnpp
Severity: wishlist

Subject: ITP: r-cran-modeldata -- Data Sets Used Useful for Modeling Packages
Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-modeldata
  Version : 0.0.1
  Upstream Author : Max Kuhn, RStudio
* URL : https://cran.r-project.org/package=modeldata
* License : MIT
  Programming Lang: GNU R
  Description : Data Sets Used Useful for Modeling Packages
 Data sets used for demonstrating or testing model-related packages are
 contained in this package.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-modeldata

Bug#948006: ITP: r-cran-modeldata -- Data Sets Used Useful for Modeling Packages

[Dylan Aïssi]

Package: wnpp
Severity: wishlist

Subject: ITP: r-cran-modeldata -- Data Sets Used Useful for Modeling Packages
Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-modeldata
  Version : 0.0.1
  Upstream Author : Max Kuhn, RStudio
* URL : https://cran.r-project.org/package=modeldata
* License : MIT
  Programming Lang: GNU R
  Description : Data Sets Used Useful for Modeling Packages
 Data sets used for demonstrating or testing model-related packages are
 contained in this package.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-modeldata

Bug#916333: dav1d_0.5.2-1_amd64.changes REJECTED

[Dylan Aïssi]

Hi Thorsten,

Thanks for your work as ftpmaster!

Le ven. 27 déc. 2019 à 00:00, Thorsten Alteholz
 a écrit :
>
> the list of grants does not contain the right to modify and distribute the
> modifications of files under the Alliance-for-Open-Media-Patent-License-1.0.
> I am afraid that this is not compatible woth the DFSG.

I have re-read the license and did not find the relevant part, could
you tag the problematic part of the
Alliance-for-Open-Media-Patent-License-1.0 ?

In case of the Alliance-for-Open-Media-Patent-License-1.0 is not
compatible with the DFSG, what should we do for packages in the Debian
archive with the same license (aom) ? Similar question for packages
with embedded dav1d (firefox) ?

Best,
Dylan

Bug#928309: ITP: android-file-transfer -- reliable MTP client with minimalistic UI

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

Package name: android-file-transfer
Upstream Author : Vladimir Menshakov
URL: https://github.com/whoozle/android-file-transfer-linux
License: LGPL-2.1+
Description: reliable MTP client with minimalistic UI
 Android-File-Transfer is a reliable MTP client with minimalistic UI.
 Its features are:
 1. Simple Qt UI with progress dialogs.
 2. FUSE wrapper, supporting partial read/writes, allowing instant access
  to your files.
 3. No file size limits.
 4. Automatically renames album cover to make it visible from media player.
 5. USB ‘Zerocopy’ support found in recent Linux kernel (no user/kernel
  data copying).
 6. No extra dependencies (e.g. libptp/libmtp).
 7. Available as static/shared library.
 8. Command line tool (aft-mtp-cli).

Bug#926259: ITP: optimir -- Integrating genetic variations in miRNA alignment

[Dylan Aïssi]

Package: wnpp
Owner: Debian Med Packaging Team 
Severity: wishlist

Package name: optimir
Upstream Author : Florian Thibord
URL: https://github.com/FlorianThibord/OptimiR
License: GPL-3
Description: Integrating genetic variations in miRNA alignment
 OptimiR is a miRSeq data alignment workflow. It integrates genetic information
 to assess the impact of variants on miRNA expression.
 .
 OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs,
 isomiRs and polymiRs from miRSeq data, & study the impact of genetic
 variations on polymiRs' expression.

This package will be maintained by the Debian Med Packaging Team at:
https://salsa.debian.org/med-team/optimir

Bug#925500: ITP: shapeit4 -- fast and accurate method for estimation of haplotypes

[Dylan Aïssi]

Package: wnpp
Owner: Debian Med Packaging Team 
Severity: wishlist

Package name: shapeit4
Upstream Author : Olivier Delaneau
URL: https://odelaneau.github.io/shapeit4/
License: Expat
Description: fast and accurate method for estimation of haplotypes (phasing)
 Segmented HAPlotype Estimation and Imputation Tools version 4 (SHAPEIT4).
 SHAPEIT4 is a fast and accurate method for estimation of haplotypes (aka
 phasing) for SNP array and sequencing data.

This package will be maintained by the Debian Med Packaging Team at:
https://salsa.debian.org/med-team/shapeit4

Bug#916333: ITP: dav1d -- fast and small AV1 video stream decoder

[Dylan Aïssi]

Package: wnpp
Owner: Debian Multimedia Maintainers 
Severity: wishlist

Package name: dav1d
Version: 0.1.0
Upstream Author: VideoLan
URL: https://code.videolan.org/videolan/dav1d
License: BSD-2-clause
Description: fast and small AV1 video stream decoder
 dav1d is an AOMedia Video 1 (AV1) cross-platform decoder and focused on speed
 and correctness.
 .
 dav1d supports the following features:
  * support for all features of the AV1 bitstream
  * support for all bitdepth, 8, 10 and 12bits
  * support for all chroma subsamplings 4:2:0, 4:2:2, 4:4:4 and grayscale
  * full acceleration for AVX-2 64bits processors
  * partial acceleration for SSSE3 processors
  * partial acceleration for NEON processors

This package is maintained by Debian Multimedia Team at
  https://salsa.debian.org/multimedia-team/dav1d

Bug#915376: ITP: r-bioc-zlibbioc -- (Virtual) zlibbioc Bioconductor package

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

Package name: r-bioc-zlibbioc
Version: 1.28.0
Upstream Author: Martin Morgan
URL: https://bioconductor.org/packages/zlibbioc/
License: Artistic-2.0
Programming Lang: GNU R
Description: (Virtual) zlibbioc Bioconductor package
 zlibbioc provides the zlib library to the Bioconductor environment.
 This is useless on Debian as we have a packaged zlib. So, to avoid to patch
 all Bioconductor packages which required zlibbioc, zlibbioc is packaged as an
 empty shell depending on zlib1g-dev (similar mechanism to r-cran-bh).

This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-bioc-zlibbioc

Bug#914445: ITP: fastp -- Ultra-fast all-in-one FASTQ preprocessor

[Dylan Aïssi]

Package: wnpp
Owner: Debian Med Packaging Team 
Severity: wishlist

Package name: fastp
Version: 0.19.5
Upstream Author : Shifu Chen
URL: https://github.com/OpenGene/fastp
License: MIT
Description: Ultra-fast all-in-one FASTQ preprocessor
 All-in-one FASTQ preprocessor, fastp provides functions including quality
 profiling, adapter trimming, read filtering and base correction. It supports
 both single-end and paired-end short read data and also provides basic support
 for long-read data.

This package will be maintained by the Debian Med Packaging Team at:
https://salsa.debian.org/med-team/fastp

Bug#912741: ITP: r-cran-biocmanager -- Access the Bioconductor Project Package Repository

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-biocmanager
  Version : 1.30.3
  Upstream Author : Martin Morgan, Marcel Ramos
* URL : https://cran.r-project.org/package=BiocManager
* License : Artistic-2.0
  Programming Lang: GNU R
  Description : Access the Bioconductor Project Package Repository
 A convenient tool to install and update Bioconductor packages.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-biocmanager

Bug#912728: ITP: r-cran-tidyverse -- Easily Install and Load the 'Tidyverse'

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-tidyverse
  Version : 1.2.1
  Upstream Author : Hadley Wickham, RStudio
* URL : https://cran.r-project.org/package=tidyverse
* License : GPL-3
  Programming Lang: GNU R
  Description : Easily Install and Load the 'Tidyverse'
 The 'tidyverse' is a set of packages that work in harmony
 because they share common data representations and 'API' design. This
 package is designed to make it easy to install and load multiple
 'tidyverse' packages in a single step. Learn more about the 'tidyverse'
 at <https://tidyverse.org>.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-tidyverse

Bug#912716: ITP: r-cran-reprex -- Prepare Reproducible Example Code via the Clipboard

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-reprex
  Version : 0.2.1
  Upstream Author : Jennifer Bryan, Jim Hester, David Robinson, Hadley
Wickham, RStudio
* URL : https://cran.r-project.org/package=reprex
* License : MIT
  Programming Lang: GNU R
  Description : Prepare Reproducible Example Code via the Clipboard
 Convenience wrapper that uses the 'rmarkdown' package to render
 small snippets of code to target formats that include both code and output.
 The goal is to encourage the sharing of small, reproducible, and runnable
 examples on code-oriented websites, such as <https://stackoverflow.com> and
 <https://github.com>, or in email. The user's clipboard is the default source
 of input code and the default target for rendered output. 'reprex' also
 extracts clean, runnable R code from various common formats, such as
 copy/paste from an R session.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-reprex

Bug#912609: ITP: r-cran-rvest -- Easily Harvest (Scrape) Web Pages

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-rvest
  Version : 0.3.2
  Upstream Author : Hadley Wickham, RStudio
* URL : https://cran.r-project.org/package=rvest
* License : GPL-3
  Programming Lang: GNU R
  Description : Easily Harvest (Scrape) Web Pages
 Wrappers around the 'xml2' and 'httr' packages to make it easy to
 download, then manipulate, HTML and XML.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-rvest

Bug#912534: ITP: r-cran-selectr -- Translate CSS Selectors to XPath Expressions

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-selectr
  Version : 0.4
  Upstream Author : Simon Potter, Simon Sapin, Ian Bicking
* URL : https://cran.r-project.org/package=selectr
* License : BSD-3-clause
  Programming Lang: GNU R
  Description : Translate CSS Selectors to XPath Expressions
 Translates a CSS3 selector into an equivalent XPath
 expression. This allows us to use CSS selectors when working with
 the XML package as it can only evaluate XPath expressions. Also
 provided are convenience functions useful for using CSS selectors on
 XML nodes. This package is a port of the Python package 'cssselect'
 (<https://cssselect.readthedocs.io/>).

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-selectr

Bug#912177: ITP: r-cran-rcmdcheck -- Run 'R CMD check' from 'R' and Capture Results

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-rcmdcheck
  Version : 1.3.0
  Upstream Author : Mango Solutions, Gábor Csárdi, RStudio
* URL : https://cran.r-project.org/package=rcmdcheck
* License : MIT
  Programming Lang: GNU R
  Description : Run 'R CMD check' from 'R' and Capture Results
 Run 'R CMD check' from 'R' programmatically, and capture the
 results of the individual checks.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-rcmdcheck

Bug#912158: ITP: r-cran-remotes -- R Package Installation from Remote Repositories

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-remotes
  Version : 2.0.1
  Upstream Author : Gábor Csárdi,
* URL : https://cran.r-project.org/package=remotes
* License : GPL-2+
  Programming Lang: GNU R
  Description : R Package Installation from Remote Repositories,
Including 'GitHub'
 Download and install R packages stored in 'GitHub',
 'BitBucket', or plain 'subversion' or 'git' repositories. This package
 is a lightweight replacement of the 'install_*' functions in 'devtools'.
 Indeed most of the code was copied over from 'devtools'.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-remotes

Bug#912138: ITP: r-cran-sessioninfo -- R Session Information

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-sessioninfo
  Version : 1.1.0
  Upstream Author : Gábor Csárdi, R core, Hadley Wickham, Winston
Chang, Robert M Flight, Kirill Müller, Jim Hester
* URL : https://cran.r-project.org/package=sessioninfo
* License : GPL-2
  Programming Lang: GNU R
  Description : R Session Information
 Query and print information about the current R session.
 It is similar to 'utils::sessionInfo()', but includes more information
 about packages, and where they were installed from.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-sessioninfo

Bug#911989: ITP: r-cran-usethis -- Automate Package and Project Setup

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-usethis
  Version : 1.4.0
  Upstream Author : Hadley Wickham, Jennifer Bryan, RStudio
* URL : https://cran.r-project.org/package=usethis
* License : GPL-3
  Programming Lang: GNU R
  Description : Automate Package and Project Setup
 Automate package and project setup tasks that are otherwise
 performed manually. This includes setting up unit testing, test
 coverage, continuous integration, Git, 'GitHub', licenses, 'Rcpp', 'RStudio'
 projects, and more.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-usethis

Bug#911984: ITP: r-cran-xopen -- Open System Files, 'URLs', Anything

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-xopen
  Version : 1.0.0
  Upstream Author : Gábor Csárdi
* URL : https://cran.r-project.org/package=xopen
* License : MIT
  Programming Lang: GNU R
  Description : Open System Files, 'URLs', Anything
 Cross platform solution to open files, directories or 'URLs'
 with their associated programs.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-xopen

Bug#911982: ITP: r-cran-clisymbols -- Unicode Symbols at the R Prompt

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-clisymbols
  Version : 1.2.0
  Upstream Author : Gábor Csárdi, Sindre Sorhus
* URL : https://cran.r-project.org/package=clisymbols
* License : MIT
  Programming Lang: GNU R
  Description : Unicode Symbols at the R Prompt
 A small subset of Unicode symbols, that are useful
 when building command line applications. They fall back to
 alternatives on terminals that do not support Unicode.
 Many symbols were taken from the 'figures' 'npm' package
 (see <https://github.com/sindresorhus/figures>).

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-clisymbols

Bug#911914: ITP: r-cran-clipr -- Read and Write from the System Clipboard

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-clipr
  Version : 0.4.1
  Upstream Author : Matthew Lincoln,
* URL : https://cran.r-project.org/package=clipr
* License : GPL-3
  Programming Lang: GNU R
  Description : Read and Write from the System Clipboard
 Simple utility functions to read from and write to the Windows,
 OS X, and X11 clipboards.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-clipr

Bug#911913: ITP: r-cran-gh -- Minimal client to access the 'GitHub' 'API'

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-gh
  Version : 1.0.1
  Upstream Author : Gábor Csárdi
* URL : https://cran.r-project.org/package=gh
* License : MIT
  Programming Lang: GNU R
  Description : Minimal client to access the 'GitHub' 'API'.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-gh

Bug#911809: ITP: r-cran-ini -- Read and Write '.ini' Files

[Dylan Aïssi]

Package: wnpp
Owner: Dylan Aïssi 
Severity: wishlist

* Package name: r-cran-ini
  Version : 0.3.1
  Upstream Author : David Valentim Dias
* URL : https://cran.r-project.org/package=ini
* License : GPL-3
  Programming Lang: GNU R
  Description : Read and Write '.ini' Files
 Parse simple '.ini' configuration files to an structured list. Users
 can manipulate this resulting list with lapply() functions. This same
 structured list can be used to write back to file after modifications.

Remark: This package is maintained by Debian R Packages Maintainers at
   https://salsa.debian.org/r-pkg-team/r-cran-ini

Bug#909334: ITP: openrazer -- OpenRazer peripheral drivers

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Dylan Aïssi 

Package name: openrazer
URL: https://openrazer.github.io/
License: GPL-2+
Description: OpenRazer peripheral drivers
 OpenRazer is a collection of GNU/Linux drivers for the Razer devices.
 Supported devices include keyboards, mice, mouse-mats, headsets and
 various other devices.

Current packaging take place at:
https://salsa.debian.org/daissi-guest/openrazer

Bug#905164: ITP: r-cran-reticulate -- R interface to Python modules, classes, and functions

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian R Packages Maintainers 

Package name: r-cran-reticulate
URL: https://cran.r-project.org/package=reticulate
License: Apache-2.0
Description: R interface to Python modules, classes, and functions
 Interface to Python modules, classes, and functions. When calling into
 Python, R data types are automatically converted to their equivalent Python
 types. When values are returned from Python to R they are converted back to R
 types.

The package will be maintained by the Debian R Packages Team at:
https://salsa.debian.org/r-pkg-team/r-cran-reticulate.git

Bug#904835: ITP: r-cran-ranger -- Fast Implementation of Random Forests

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian R Packages Maintainers 

Package name: r-cran-ranger
URL: https://cran.r-project.org/package=ranger
License: GPL-3+
Description: Fast Implementation of Random Forests
 A fast implementation of Random Forests, particularly suited for high
 dimensional data. Ensembles of classification, regression, survival and
 probability prediction trees are supported. Data from genome-wide association
 studies can be analyzed efficiently. In addition to data frames, datasets of
 class 'gwaa.data' (R package 'GenABEL') and 'dgCMatrix' (R package 'Matrix')
 can be directly analyzed.

The package will be maintained by the Debian R Packages Team at:
https://salsa.debian.org/r-pkg-team/r-cran-ranger.git

Bug#903732: ITP: python-lzstring -- LZ-based compression algorithm

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 

Package name: python-lzstring
URL: https://pypi.org/project/lzstring/
License: Expat
Description: LZ-based compression algorithm for Python
 python-lzstring is a simple Python module that compression data using LZ-based
 algorithm.

This package is a dependency of MultiQC.

It will be maintained by the Debian Med Packaging Team at:
https://salsa.debian.org/med-team/python-lzstring/

Bug#903730: ITP: python-spectra -- Easy color scales and color conversion

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 

Package name: python-spectra
URL: https://pypi.org/project/spectra/
License: Expat
Description: Easy color scales and color conversion for Python
 Spectra is a Python library that makes color math, color scales, and
 color-space conversion easy. Support for: Color scales, Color ranges, Color
 blending, Brightening/darkening colors, Saturating/desaturating colors,
 Conversion to/from multiple color spaces.

This package is a dependency of MultiQC.

It will be maintained by the Debian Med Packaging Team at:
https://salsa.debian.org/med-team/python-spectra/

Bug#903728: ITP: python-colormath -- Abstracts common color math operations

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 

Package name: python-colormath
URL: https://pypi.org/project/colormath/
License: BSD-3-clause
Description: Abstracts common color math operations
 python-colormath is a simple Python module that spares the user from directly
 dealing with color math. Some features include: Support for a wide range of
 color spaces. A good chunk of the CIE spaces, RGB, HSL/HSV, CMY/CMYK, and many
 more. Conversions between the various color spaces. For example, XYZ to sRGB,
 Spectral to XYZ, CIE Lab to Adobe RGB. Calculation of color difference. All
 CIE Delta E functions, plus CMC. Chromatic adaptations (changing illuminants).
 RGB to hex and vice-versa. 16-bit RGB support.

This package is a dependency of MultiQC.

It will be maintained by the Debian Med Packaging Team at:
https://salsa.debian.org/med-team/python-colormath/

Bug#858947: Processed: retitle to RFP: plink2 -- whole-genome association analysis toolset

[Dylan Aïssi]

Hi Andreas,

2018-07-02 9:52 GMT+02:00 Andreas Tille :
> I wonder whether plink2[1] will simply replace plink1.9 and this
> RFP could be closed.

Plink2 will not be compatible with plink1 and plink1.9, so for
reproducibility and compatibility we need to keep them in Debian.
I still plan to package plink2 but I am waiting for a more stable
version to finish the package. I don't want to propose an alpha
version, maybe I will wait at least until a beta version.

Best,
Dylan

Bug#901871: ITP: photoflare -- Simple but powerful Cross Platform Image Editor

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Dylan Aïssi 

Package name: photoflare
URL: http://photoflare.io/
License: GPL-3+
Description: Simple but powerful Cross Platform Image Editor
 This is an effort to bring quick, simple but powerful image editing to the
 masses. PhotoFlare is inspired by the image editor currently only available
 on Microsoft Windows – PhotoFiltre. However, it will not be a straight clone.
 It is being built from the ground up to be much improved and cross platform
 too!

Bug#900765: ITP: libstatgen -- processing and analyzing next generation sequencing and genotyping data library

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 

Package name: libstatgen
URL: https://genome.sph.umich.edu/wiki/C++_Library:_libStatGen
License: GPL-3+
Description: processing and analyzing next generation sequencing and
genotyping data library
 libStatGen is a library for statistical genetic programs. It includes some:
 A. General Operation Classes including: File/Stream I/O, String processing
  and Parameter Parsing.
 B. Statistical Genetic Specific Classes including: Handling Common file
  formats (Accessors to get/set values, Indexed access to BAM files) and
  some utility classes, including: 1. Cigar: interpretation and mapping
  between query and reference. 2. Pileup: structured access to data by
  individual reference position.

This library is a dependency of minimac4 (#900764).

The package will be maintained by the Debian Med Packaging Team at:
https://salsa.debian.org/med-team/libstatgen/

Bug#900764: ITP: minimac4 -- Fast Imputation Based on State Space Reduction HMM

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 

Package name: minimac4
URL: https://genome.sph.umich.edu/wiki/Minimac4
License: GPL-3
Description: Fast Imputation Based on State Space Reduction HMM
 Minimac4 is a lower memory and more computationally efficient implementation
 of "minimac2/3". It is an algorithm for genotypic imputation that works on
 phased genotypes (say from MaCH).
 .
 Minimac4 is designed to handle very large reference panels in a more
 computationally efficient way with no loss of accuracy. This algorithm
 analyzes only the unique sets of haplotypes in small genomic segments, thereby
 saving on time\-complexity, computational memory but no loss in degree of
 accuracy.

This package will be maintained by the Debian Med Packaging Team at:
https://salsa.debian.org/med-team/minimac4

Bug#899401: ITP: r-cran-metamix -- GNU R bayesian mixture analysis for metagenomic community profiling

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian R Packages Maintainers 

Package name: r-cran-metamix
URL: https://cran.r-project.org/package=metaMix
License: GPL-3
Description: GNU R bayesian mixture analysis for metagenomic community profiling
 Resolves complex metagenomic mixtures by analysing deep sequencing
 data, using a mixture model based approach. The use of parallel Monte
 Carlo Markov chains for the exploration of the species space enables
 the identification of the set of species more likely to contribute to
 the mixture.

This package will be maintained by the Debian R Packages Maintainers at:
https://salsa.debian.org/r-pkg-team/r-cran-metamix

Bug#899400: ITP: bolt-lmm -- Efficient large cohorts genome-wide Bayesian mixed-model association testing

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 

Package name: bolt-lmm
URL: https://data.broadinstitute.org/alkesgroup/BOLT-LMM/
License: GPL-3+
Description: Efficient large cohorts genome-wide Bayesian mixed-model
association testing
 The BOLT-LMM software package currently consists of two main algorithms, the
 BOLT-LMM algorithm for mixed model association testing, and the BOLT-REML
 algorithm for variance components analysis (i.e., partitioning of
 SNP-heritability and estimation of genetic correlations).

This package will be maintained by the Debian Med Packaging Team at:
https://salsa.debian.org/med-team/bolt-lmm

Bug#896142: ITP: ChromImpute -- Large-scale systematic epigenome imputation

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 

Package name: chromimpute
URL: http://www.biolchem.ucla.edu/labs/ernst/ChromImpute/
License: GPL-2
Description: Large-scale systematic epigenome imputation
 ChromImpute is software for large-scale systematic epigenome imputation.
 ChromImpute takes an existing compendium of epigenomic data and uses it to
 predict signal tracks for mark-sample combinations not experimentally mapped
 or to generate a potentially more robust version of data sets that have been
 mapped experimentally. ChromImpute bases its predictions on features from
 signal tracks of other marks that have been mapped in the target sample and
 the target mark in other samples with these features combined using an
 ensemble of regression trees.

This package will be maintained by the Debian Med Packaging Team at:
https://salsa.debian.org/med-team/chromimpute.git/

Bug#893827: ITP: bioSyntax -- Syntax highlighting for computational biology

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 

Package name: biosyntax
URL: https://biosyntax.org/
License: GPL-3
Description: Syntax Highlighting for Computational Biology (gedit)
 Syntax highlighting for computational biology to bring you intuitively close
 to your data. BioSyntax supports .sam, .flagstat, .vcf, .fasta, .fastq, .faidx
 , .clustal, .pdb, .gtf, .bed files & more.

This package will be maintained by the Debian Med Packaging Team at:
https://salsa.debian.org/med-team/biosyntax.git/

Bug#892284: ITP: ChromHMM -- Chromatin state discovery and characterization

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
 Owner: Debian Med Packaging Team 

Package name: chromhmm
URL: http://compbio.mit.edu/ChromHMM/
License: GPL-3+
Description: Chromatin state discovery and characterization
 ChromHMM is software for learning and characterizing chromatin states.
 ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of
 various histone modifications to discover de novo the major re-occuring
 combinatorial and spatial patterns of marks. ChromHMM is based on a
 multivariate Hidden Markov Model that explicitly models the presence or
 absence of each chromatin mark. The resulting model can then be used to
 systematically annotate a genome in one or more cell types. By automatically
 computing state enrichments for large-scale functional and annotation datasets
 ChromHMM facilitates the biological characterization of each state. ChromHMM
 also produces files with genome-wide maps of chromatin state annotations that
 can be directly visualized in a genome browser.

This package will be maintained by the Debian Med Packaging Team at:
https://salsa.debian.org/med-team/chromhmm.git/

Bug#892038: ITP: r-cran-ggsci -- Scientific Journal and Sci-Fi Themed Color Palettes

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 
X-Debbugs-Cc: debia...@lists.debian.org

Package name: r-cran-ggsci
URL: https://cran.r-project.org/package=ggsci
License: GPL-3
Description: Scientific Journal and Sci-Fi Themed Color Palettes
 A collection of 'ggplot2' color palettes inspired by
 plots in scientific journals, data visualization libraries,
 science fiction movies, and TV shows.

The package will be maintained by the Debian R Packages Team at:
https://salsa.debian.org/r-pkg-team/r-cran-ggsci.git

Bug#892039: ITP: r-cran-bigmemory -- Manage Massive Matrices with Shared Memory and Memory-Mapped Files

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 
X-Debbugs-Cc: debia...@lists.debian.org

Package name: r-cran-bigmemory
URL: https://cran.r-project.org/package=bigmemory
License: LGPL-3 or Apache-2
Description: Manage Massive Matrices with Shared Memory and Memory-Mapped Files
 Create, store, access, and manipulate massive matrices.
 Matrices are allocated to shared memory and may use memory-mapped
 files.  Packages 'biganalytics', 'bigtabulate', 'synchronicity', and
 'bigalgebra' provide advanced functionality.

The package will be maintained by the Debian R Packages Team at:
https://salsa.debian.org/r-pkg-team/r-cran-bigmemory.git

Bug#892040: ITP: r-cran-bigmemory.sri -- A shared resource interface for Bigmemory Project packages

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 
X-Debbugs-Cc: debia...@lists.debian.org

Package name: r-cran-bigmemory.sri
URL: https://cran.r-project.org/package=bigmemory.sri
License: LGPL-3 or Apache-2
Description: A shared resource interface for Bigmemory Project packages
 This package provides a shared resource interface for the bigmemory and
 synchronicity packages.

The package will be maintained by the Debian R Packages Team at:
https://salsa.debian.org/r-pkg-team/r-cran-bigmemory.sri.git

Bug#891808: ITP: r-bioc-impute -- Imputation for microarray data

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 

Package name: r-bioc-impute
URL: https://bioconductor.org/packages/impute/
License: GPL-2
Description: Imputation for microarray data
 R package which provide a function to perform imputation for
 microarray data (currently KNN only).

The package will be maintained by the Debian R Packages Team at:
https://salsa.debian.org/r-pkg-team/r-bioc-impute.git

Bug#891734: ITP: r-cran-gee -- Generalized Estimation Equation Solver

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 

Package name: r-cran-gee
URL: https://cran.r-project.org/package=gee
License: GPL-2
Description: Generalized Estimation Equation Solver
 R package which provide a function to solve a Generalized Estimation
 Equation Model.

The package will be maintained by the Debian R Packages Team at:
https://salsa.debian.org/r-pkg-team/r-cran-gee.git

Bug#891476: ITP: r-cran-prettyr -- Pretty Descriptive Stats

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 

Package name: r-cran-prettyr
URL: https://cran.r-project.org/package=prettyR
License: GPL-2+
Description: Pretty Descriptive Stats
 Functions for conventionally formatting descriptive stats,
 reshaping data frames and formatting R output as HTML.

The package will be maintained by the Debian R Packages Team at:
https://salsa.debian.org/r-pkg-team/r-cran-prettyr.git

Bug#891326: ITP: jheatchart -- Heat map charting library for Java

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 

Package name: jheatchart
URL: http://www.javaheatmap.com/
License: LGPL-3+
Description: Heat map charting library for Java
 The JHeatChart library provides a simple API for generating Java heat maps.
 Output heat maps as .png, .jpg or .gif images. Generate Image objects for
 further processing. Show generated Image in a Swing JPanel. Fully customisable
 colours, dimensions, fonts etc. Linear, logarithmic and exponential
 colour scales.

This is a dependency of ChromHMM. This package will be maintained by
the Debian Med Packaging Team at:
https://salsa.debian.org/med-team/jheatchart.git

Bug#890970: ITP: r-cran-flashclust -- Implementation of optimal hierarchical clustering

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 

Package name: r-cran-flashclust
URL: https://cran.r-project.org/package=flashClust
License: GPL-2+
Description: Implementation of optimal hierarchical clustering
 Fast implementation of hierarchical clustering

This is a dependency of r-cran-factominer (#890969). The package will
be maintained by the Debian R Packages Team at:
https://salsa.debian.org/r-pkg-team/r-cran-flashclust.git

Bug#890971: ITP: r-cran-leaps -- Regression Subset Selection

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 

Package name: r-cran-leaps
URL: https://cran.r-project.org/package=leaps
License: GPL-2+
Description: Regression Subset Selection
 Regression subset selection, including exhaustive search.

This is a dependency of r-cran-factominer (#890969). The package will
be maintained by the Debian R Packages Team at:
https://salsa.debian.org/r-pkg-team/r-cran-leaps.git

Bug#890969: ITP: r-cran-factominer -- Multivariate Exploratory Data Analysis and Data Mining

[Dylan Aïssi]

Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team 

Package name: r-cran-factominer
URL: https://cran.r-project.org/package=FactoMineR
License: GPL-2+
Description: Multivariate Exploratory Data Analysis and Data Mining
 Exploratory data analysis methods to summarize, visualize and describe
 datasets. The main principal component methods are available, those with
 the largest potential in terms of applications: principal component
 analysis (PCA) when variables are quantitative, correspondence analysis
 (CA) and multiple correspondence analysis (MCA) when variables are
 categorical, Multiple Factor Analysis when variables are structured in
 groups, etc. and hierarchical cluster analysis.

The package will be maintained by the Debian R Packages Team at:
https://salsa.debian.org/r-pkg-team/r-cran-factominer.git