Re: Fw: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL]

2024-05-15 Thread Finan, Sean 
Hi James,

That code is defunct and shouldn't be used.  I will take it out for the next 
release.

From: James Masanz 
Sent: Wednesday, May 15, 2024 4:05 PM
To: dev@ctakes.apache.org 
Subject: Re: Fw: Please test the Apache cTAKES 5.1.0 release candidate 
[EXTERNAL]

* External Email - Caution *


Hi all,

To get a clean environment, I started a new Windows Sandbox (on Windows
11), installed IntelliJ, and opened the downloaded ctakes sources as a
project.

Not sure if this was valid to try anymore - I tried to
run HelloWorldAggregatePipeline.class directly.

I haven't dug into this yet, but in case someone knows offhand - although
it completed with an exit code 0 and output a value for Polarity, there is
also this message included.

** Error: problem of opening/reading config file:
'file:\C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\ctakes-lvg\target\classes\org\apache\ctakes\lvg\data\config\lvg.properties'.
Use -x option to specify the config file path.

The lvg.properties file does exist in that directory.

The context for that message is below

I will do some other testing before I take a look at
HelloWorldAggregatePipeline again.

- James


15 May 2024 14:44:25  INFO LvgAnnotator - URL for lvg.properties
=/C:/Users/Public/cT5/ctakes-5.1.0-source-release/ctakes-5.1.0/ctakes-lvg/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties
15 May 2024 14:44:26  INFO SentenceDetector - Sentence detector model file:
org/apache/ctakes/core/models/sentdetect/sd-med-model.zip
15 May 2024 14:44:26  INFO TokenizerAnnotatorPTB - Initializing
org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
15 May 2024 14:44:26  INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg
with config file =
file:\C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\ctakes-lvg\target\classes\org\apache\ctakes\lvg\data\config\lvg.properties
15 May 2024 14:44:26  INFO LvgCmdApiResourceImpl -   config file absolute
path =
C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\file:\C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\ctakes-lvg\target\classes\org\apache\ctakes\lvg\data\config\lvg.properties
15 May 2024 14:44:26  INFO LvgCmdApiResourceImpl - cwd =
C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0
15 May 2024 14:44:26  INFO LvgCmdApiResourceImpl - cd
file:\C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\ctakes-lvg\target\classes\org\apache\ctakes\lvg\
** Configuration Error:
file:\C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\ctakes-lvg\target\classes\org\apache\ctakes\lvg\data\config\lvg.properties
(The filename, directory name, or volume label syntax is incorrect)
** Error: problem of opening/reading config file:
'file:\C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\ctakes-lvg\target\classes\org\apache\ctakes\lvg\data\config\lvg.properties'.
Use -x option to specify the config file path.
** Configuration Error:
file:\C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\ctakes-lvg\target\classes\org\apache\ctakes\lvg\data\config\lvg.properties
(The filename, directory name, or volume label syntax is incorrect)
** Error: problem of opening/reading config file:
'file:\C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\ctakes-lvg\target\classes\org\apache\ctakes\lvg\data\config\lvg.properties'.
Use -x option to specify the config file path.
15 May 2024 14:44:26  INFO LvgCmdApiResourceImpl - cd
C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0
15 May 2024 14:44:26  INFO ContextDependentTokenizerAnnotator - Finite
state machines loaded.
15 May 2024 14:44:26  INFO POSTagger - POS tagger model file:
org/apache/ctakes/postagger/models/mayo-pos.zip
15 May 2024 14:44:26  INFO SentenceDetector - Starting processing.
15 May 2024 14:44:26  INFO TokenizerAnnotatorPTB - process(JCas) in
org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
15 May 2024 14:44:26  INFO LvgAnnotator - process(JCas)
15 May 2024 14:44:26  INFO ContextDependentTokenizerAnnotator -
process(JCas)
15 May 2024 14:44:26  INFO POSTagger - process(JCas)
15 May 2024 14:44:26  INFO ConfigParameterExample - Token:Hello POS:NNP
15 May 2024 14:44:26  INFO ConfigParameterExample - Token:World POS:NNP
Entity: Hello === Polarity: 0
Entity: World === Polarity: 0

Process finished with exit code 0


On Wed, May 1, 2024 at 3:55 PM Finan, Sean
 wrote:

> Hi all,
>
> As you may have seen, the last 5.1.0 candidate had some issues.
>
> I have created a new 5.1.0 candidate, available here:
>
> https://urldefense.com/v3/__https://repository.apache.org/content/repositories/staging/org/apache/ctakes/ctakes/5.1.0/__;!!NZvER7FxgEiBAiR_!tLjBU3w09cUeWE4115MKOWDwD6zM9k3Nyn-PlEf6BeifISf-bW5Fe2wZs1f1X42it4dl9D0EwoYgSLc_GZjCIKOkXjw-J_TO$
>
> As before, individual module jars up two levels and in associated
> subdirectories.
>
> Hopefully this candidate fares better.  Please report any findings before
> next Monday,  May 6th.
>
> Thank you,
>
> Sean
>

Re: Fw: Please test the Apache cTAKES 5.1.0 release candidate

2024-05-15 Thread James Masanz 
Hi all,

To get a clean environment, I started a new Windows Sandbox (on Windows
11), installed IntelliJ, and opened the downloaded ctakes sources as a
project.

Not sure if this was valid to try anymore - I tried to
run HelloWorldAggregatePipeline.class directly.

I haven't dug into this yet, but in case someone knows offhand - although
it completed with an exit code 0 and output a value for Polarity, there is
also this message included.

** Error: problem of opening/reading config file:
'file:\C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\ctakes-lvg\target\classes\org\apache\ctakes\lvg\data\config\lvg.properties'.
Use -x option to specify the config file path.

The lvg.properties file does exist in that directory.

The context for that message is below

I will do some other testing before I take a look at
HelloWorldAggregatePipeline again.

- James


15 May 2024 14:44:25  INFO LvgAnnotator - URL for lvg.properties
=/C:/Users/Public/cT5/ctakes-5.1.0-source-release/ctakes-5.1.0/ctakes-lvg/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties
15 May 2024 14:44:26  INFO SentenceDetector - Sentence detector model file:
org/apache/ctakes/core/models/sentdetect/sd-med-model.zip
15 May 2024 14:44:26  INFO TokenizerAnnotatorPTB - Initializing
org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
15 May 2024 14:44:26  INFO LvgCmdApiResourceImpl - Loading NLM Norm and Lvg
with config file =
file:\C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\ctakes-lvg\target\classes\org\apache\ctakes\lvg\data\config\lvg.properties
15 May 2024 14:44:26  INFO LvgCmdApiResourceImpl -   config file absolute
path =
C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\file:\C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\ctakes-lvg\target\classes\org\apache\ctakes\lvg\data\config\lvg.properties
15 May 2024 14:44:26  INFO LvgCmdApiResourceImpl - cwd =
C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0
15 May 2024 14:44:26  INFO LvgCmdApiResourceImpl - cd
file:\C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\ctakes-lvg\target\classes\org\apache\ctakes\lvg\
** Configuration Error:
file:\C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\ctakes-lvg\target\classes\org\apache\ctakes\lvg\data\config\lvg.properties
(The filename, directory name, or volume label syntax is incorrect)
** Error: problem of opening/reading config file:
'file:\C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\ctakes-lvg\target\classes\org\apache\ctakes\lvg\data\config\lvg.properties'.
Use -x option to specify the config file path.
** Configuration Error:
file:\C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\ctakes-lvg\target\classes\org\apache\ctakes\lvg\data\config\lvg.properties
(The filename, directory name, or volume label syntax is incorrect)
** Error: problem of opening/reading config file:
'file:\C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0\ctakes-lvg\target\classes\org\apache\ctakes\lvg\data\config\lvg.properties'.
Use -x option to specify the config file path.
15 May 2024 14:44:26  INFO LvgCmdApiResourceImpl - cd
C:\Users\Public\cT5\ctakes-5.1.0-source-release\ctakes-5.1.0
15 May 2024 14:44:26  INFO ContextDependentTokenizerAnnotator - Finite
state machines loaded.
15 May 2024 14:44:26  INFO POSTagger - POS tagger model file:
org/apache/ctakes/postagger/models/mayo-pos.zip
15 May 2024 14:44:26  INFO SentenceDetector - Starting processing.
15 May 2024 14:44:26  INFO TokenizerAnnotatorPTB - process(JCas) in
org.apache.ctakes.core.ae.TokenizerAnnotatorPTB
15 May 2024 14:44:26  INFO LvgAnnotator - process(JCas)
15 May 2024 14:44:26  INFO ContextDependentTokenizerAnnotator -
process(JCas)
15 May 2024 14:44:26  INFO POSTagger - process(JCas)
15 May 2024 14:44:26  INFO ConfigParameterExample - Token:Hello POS:NNP
15 May 2024 14:44:26  INFO ConfigParameterExample - Token:World POS:NNP
Entity: Hello === Polarity: 0
Entity: World === Polarity: 0

Process finished with exit code 0


On Wed, May 1, 2024 at 3:55 PM Finan, Sean
 wrote:

> Hi all,
>
> As you may have seen, the last 5.1.0 candidate had some issues.
>
> I have created a new 5.1.0 candidate, available here:
>
> https://repository.apache.org/content/repositories/staging/org/apache/ctakes/ctakes/5.1.0/
>
> As before, individual module jars up two levels and in associated
> subdirectories.
>
> Hopefully this candidate fares better.  Please report any findings before
> next Monday,  May 6th.
>
> Thank you,
>
> Sean
>
> p.s.
> If you test build any of the rest projects (e.g. ctakes-web-rest) or build
> an installation with Dockhand, you must first run mvn install.  Those
> builds require ctakes module jars to exist where they can be fetched, and
> as ctakes 5.1.0 will not be available through maven central before a
> release, the jars must be in your .m2 directory.
>
>
>
>
>
> 
> From: Finan, Sean
> Sent: Friday, April 26, 2024 11:58 AM
> To:

Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]

2024-05-15 Thread Johns, Dennis 
+1 from me.
-Dennis

From: Savova, Guergana 
Sent: Wednesday, May 15, 2024 2:26 PM
To: dev@ctakes.apache.org 
Subject: RE: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] 
[SUSPICIOUS]

* External Email - Caution *


+1 from me.
--Guergana

-Original Message-
From: Finan, Sean 
Sent: Wednesday, May 15, 2024 1:32 PM
To: dev@ctakes.apache.org
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]

* External Email - Caution *


Thanks Tim!


From: Miller, Timothy 
Sent: Wednesday, May 15, 2024 11:38 AM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]

* External Email - Caution *


Thanks Sean,
I was able to get it working – definitely a user/documentation issue and not an 
issue with the code. Looks like a great release. I’m happy to vote for release 
+1.
Tim


From: Finan, Sean 
Date: Tuesday, May 14, 2024 at 10:35 AM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]
* External Email - Caution *


Ah - are you just running the class within intellij?  If so, you need to set 
the classpath in the run configuration to be ctakes-examples.  Otherwise the 
classpath doesn't contain anything from modules outside ctakes-gui and 
ctakes-core.

Alternatively, run the maven compile step with the "runPiperGui" profile 
selected.  That will also run the piper file submitter gui with the correct 
classpath.

Using a binary build, after running bin/getUmlsDictionary, running 
bin/runPiperSubmitter also works.

I don't want to do it for 5.1.0, but I should make names of the class, profile 
and script match.

I will check the wiki instructions and make sure that -exact- details are in 
there.

Sean


From: Miller, Timothy 
Sent: Tuesday, May 14, 2024 12:55 PM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]

* External Email - Caution *


I can check out and build successfully with mvn from the command line. I can 
successfully open in intellij and run the piper file submitter. I get an error 
trying to run the default fast pipeline piper file:

Loading Piper File DefaultTokenizerPipeline ...


Error: MESSAGE LOCALIZATION FAILED: Can't find resource for bundle 
java.util.PropertyResourceBundle, key No Analysis Component found for 
ContextDependentTokenizerAnnotator



It doesn’t seem to be able to find the ContextDependentTokenizerAnnotator.

Tim



From: Miller, Timothy 
Date: Tuesday, May 14, 2024 at 9:25 AM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS]
* External Email - Caution *


What would you recommend for testing? Download the release tag to a clean 
system and try to do mvn compile and run some tests?
Tim


From: Finan, Sean 
Date: Thursday, May 2, 2024 at 6:57 AM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS]
* External Email - Caution *


Hi Gandhi,


  *   So post release I would be able to run mvn clean
install on web rest module rather than relying on resources in .m2 folder

The opposite.  Pre-release there are no jars on maven central, post-release 
there are.
Running 'mvn package' directly on the ctakes-web-rest project (in its 
directory) or running 'mvn package' on the ctakes -main- project (in the main 
ctakes root directory) with the web-rest-build profile enabled 
'-Pweb-rest-build'
will build the ctakes-web-rest.war web package.
That profile is defined in the main ctakes pom.

RE: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]

2024-05-15 Thread Savova, Guergana 
+1 from me.
--Guergana

-Original Message-
From: Finan, Sean  
Sent: Wednesday, May 15, 2024 1:32 PM
To: dev@ctakes.apache.org
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]

* External Email - Caution *


Thanks Tim!


From: Miller, Timothy 
Sent: Wednesday, May 15, 2024 11:38 AM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]

* External Email - Caution *


Thanks Sean,
I was able to get it working – definitely a user/documentation issue and not an 
issue with the code. Looks like a great release. I’m happy to vote for release 
+1.
Tim


From: Finan, Sean 
Date: Tuesday, May 14, 2024 at 10:35 AM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]
* External Email - Caution *


Ah - are you just running the class within intellij?  If so, you need to set 
the classpath in the run configuration to be ctakes-examples.  Otherwise the 
classpath doesn't contain anything from modules outside ctakes-gui and 
ctakes-core.

Alternatively, run the maven compile step with the "runPiperGui" profile 
selected.  That will also run the piper file submitter gui with the correct 
classpath.

Using a binary build, after running bin/getUmlsDictionary, running 
bin/runPiperSubmitter also works.

I don't want to do it for 5.1.0, but I should make names of the class, profile 
and script match.

I will check the wiki instructions and make sure that -exact- details are in 
there.

Sean


From: Miller, Timothy 
Sent: Tuesday, May 14, 2024 12:55 PM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]

* External Email - Caution *


I can check out and build successfully with mvn from the command line. I can 
successfully open in intellij and run the piper file submitter. I get an error 
trying to run the default fast pipeline piper file:

Loading Piper File DefaultTokenizerPipeline ...


Error: MESSAGE LOCALIZATION FAILED: Can't find resource for bundle 
java.util.PropertyResourceBundle, key No Analysis Component found for 
ContextDependentTokenizerAnnotator



It doesn’t seem to be able to find the ContextDependentTokenizerAnnotator.

Tim



From: Miller, Timothy 
Date: Tuesday, May 14, 2024 at 9:25 AM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS]
* External Email - Caution *


What would you recommend for testing? Download the release tag to a clean 
system and try to do mvn compile and run some tests?
Tim


From: Finan, Sean 
Date: Thursday, May 2, 2024 at 6:57 AM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS]
* External Email - Caution *


Hi Gandhi,


  *   So post release I would be able to run mvn clean
install on web rest module rather than relying on resources in .m2 folder

The opposite.  Pre-release there are no jars on maven central, post-release 
there are.
Running 'mvn package' directly on the ctakes-web-rest project (in its 
directory) or running 'mvn package' on the ctakes -main- project (in the main 
ctakes root directory) with the web-rest-build profile enabled 
'-Pweb-rest-build'
will build the ctakes-web-rest.war web package.
That profile is defined in the main ctakes pom.

Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]

2024-05-15 Thread Finan, Sean 
Thanks Tim!


From: Miller, Timothy 
Sent: Wednesday, May 15, 2024 11:38 AM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]

* External Email - Caution *


Thanks Sean,
I was able to get it working – definitely a user/documentation issue and not an 
issue with the code. Looks like a great release. I’m happy to vote for release 
+1.
Tim


From: Finan, Sean 
Date: Tuesday, May 14, 2024 at 10:35 AM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]
* External Email - Caution *


Ah - are you just running the class within intellij?  If so, you need to set 
the classpath in the run configuration to be ctakes-examples.  Otherwise the 
classpath doesn't contain anything from modules outside ctakes-gui and 
ctakes-core.

Alternatively, run the maven compile step with the "runPiperGui" profile 
selected.  That will also run the piper file submitter gui with the correct 
classpath.

Using a binary build, after running bin/getUmlsDictionary, running 
bin/runPiperSubmitter also works.

I don't want to do it for 5.1.0, but I should make names of the class, profile 
and script match.

I will check the wiki instructions and make sure that -exact- details are in 
there.

Sean


From: Miller, Timothy 
Sent: Tuesday, May 14, 2024 12:55 PM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]

* External Email - Caution *


I can check out and build successfully with mvn from the command line. I can 
successfully open in intellij and run the piper file submitter. I get an error 
trying to run the default fast pipeline piper file:

Loading Piper File DefaultTokenizerPipeline ...


Error: MESSAGE LOCALIZATION FAILED: Can't find resource for bundle 
java.util.PropertyResourceBundle, key No Analysis Component found for 
ContextDependentTokenizerAnnotator



It doesn’t seem to be able to find the ContextDependentTokenizerAnnotator.

Tim



From: Miller, Timothy 
Date: Tuesday, May 14, 2024 at 9:25 AM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS]
* External Email - Caution *


What would you recommend for testing? Download the release tag to a clean 
system and try to do mvn compile and run some tests?
Tim


From: Finan, Sean 
Date: Thursday, May 2, 2024 at 6:57 AM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS]
* External Email - Caution *


Hi Gandhi,


  *   So post release I would be able to run mvn clean
install on web rest module rather than relying on resources in .m2 folder

The opposite.  Pre-release there are no jars on maven central, post-release 
there are.
Running 'mvn package' directly on the ctakes-web-rest project (in its directory)
or
running 'mvn package' on the ctakes -main- project (in the main ctakes root 
directory) with the web-rest-build profile enabled '-Pweb-rest-build'
will build the ctakes-web-rest.war web package.
That profile is defined in the main ctakes pom.

Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]

2024-05-15 Thread Miller, Timothy 
Thanks Sean,
I was able to get it working – definitely a user/documentation issue and not an 
issue with the code. Looks like a great release. I’m happy to vote for release 
+1.
Tim


From: Finan, Sean 
Date: Tuesday, May 14, 2024 at 10:35 AM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]
* External Email - Caution *


Ah - are you just running the class within intellij?  If so, you need to set 
the classpath in the run configuration to be ctakes-examples.  Otherwise the 
classpath doesn't contain anything from modules outside ctakes-gui and 
ctakes-core.

Alternatively, run the maven compile step with the "runPiperGui" profile 
selected.  That will also run the piper file submitter gui with the correct 
classpath.

Using a binary build, after running bin/getUmlsDictionary, running 
bin/runPiperSubmitter also works.

I don't want to do it for 5.1.0, but I should make names of the class, profile 
and script match.

I will check the wiki instructions and make sure that -exact- details are in 
there.

Sean


From: Miller, Timothy 
Sent: Tuesday, May 14, 2024 12:55 PM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS] [SUSPICIOUS]

* External Email - Caution *


I can check out and build successfully with mvn from the command line. I can 
successfully open in intellij and run the piper file submitter. I get an error 
trying to run the default fast pipeline piper file:

Loading Piper File DefaultTokenizerPipeline ...


Error: MESSAGE LOCALIZATION FAILED: Can't find resource for bundle 
java.util.PropertyResourceBundle, key No Analysis Component found for 
ContextDependentTokenizerAnnotator



It doesn’t seem to be able to find the ContextDependentTokenizerAnnotator.

Tim



From: Miller, Timothy 
Date: Tuesday, May 14, 2024 at 9:25 AM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
[SUSPICIOUS] [SUSPICIOUS]
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What would you recommend for testing? Download the release tag to a clean 
system and try to do mvn compile and run some tests?
Tim


From: Finan, Sean 
Date: Thursday, May 2, 2024 at 6:57 AM
To: dev@ctakes.apache.org 
Subject: Re: Please test the Apache cTAKES 5.1.0 release candidate [EXTERNAL] 
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Hi Gandhi,


  *   So post release I would be able to run mvn clean
install on web rest module rather than relying on resources in .m2 folder

The opposite.  Pre-release there are no jars on maven central, post-release 
there are.
Running 'mvn package' directly on the ctakes-web-rest project (in its directory)
or
running 'mvn package' on the ctakes -main- project (in the main ctakes root 
directory) with the web-rest-build profile enabled '-Pweb-rest-build'
will build the ctakes-web-rest.war web package.
That profile is defined in the main ctakes pom.
https://urldefense.com/v3/__https://github.com/apache/ctakes/blob/main/pom.xml*L1074__;Iw!!NZvER7FxgEiBAiR_!qEC094V4WptTp0dDb8gSoucu-ATor3CRJ8D064AyK511nLCL-ngQkVe-b3Ci3xgtI2BMcKLF1VFuuZZ7Q0sAXaNzpr0cHK4p5MRW6FKEcjQdPO4jLXZJfA$

I added a little bit to your instructions in the ctakes-web-rest README