Re: Convert type system of a component to cTakes typesysem [EXTERNAL]

2019-06-12 Thread Siamak Barzegar
Dear Tim,

Thank you so much for your reply. Yes, I think it would be great to have
Heideltime in cTAKES.
Actually, I already converted the Heideltime's typesystem to cTAKES. I
changed the Heideltime'c code. It seems it works well. I will modify it
more and let you know about the reuslts.

With Best Wishes,
Siamak

On Sat, 8 Jun 2019 at 04:13, Miller, Timothy <
timothy.mil...@childrens.harvard.edu> wrote:

> I don't have much experience with Heideltime, but I think this would be a
> great addition to ctakes, so if you know Heideltime a bit and you're
> willing to put in the effort I'm happy to help with your understanding the
> typesystem. I don't know that there's an easy way of 'converting' other
> than just writing some java code in a UIMA analysis engine that converts
> UIMA types to whatever Heideltime reads, makes a call to Heideltime, and
> then iterates over types output from Heideltime and creating the equivalent
> UIMA types. If you have some more info on what sort of conversion you had
> in mind let me know.
> Tim
>
> -Original Message-
> From: Siamak Barzegar 
> Sent: Thursday, June 6, 2019 5:59 AM
> To: dev@ctakes.apache.org
> Subject: Convert type system of a component to cTakes typesysem [EXTERNAL]
>
> Dear All,
>
> I want to integrate HeidelTime project (
>
> https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_HeidelTime_heideltime=DwIBaQ=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU=Heup-IbsIg9Q1TPOylpP9FE4GTK-OqdTDRRNQXipowRLRjx0ibQrHEo8uYx6674h=OpaELc8Grwv2E1s2bEQTdL8LDw39-LJdnTMrUg6g6wI=zze0700gfvrFb8vk0FxhQfRq25AsRVyy2p8RUbQK3-c=)
> as a component into cTakes to use it with other components in ctakes (to
> build a pipeline for my task) But the problem is two projects (HeidelTime
> and cTakes) have different typesystems.
>
> is there anyway to convert heidelTime typesystem to cTakes one?
>
> PS: It seems Nactem had a code for it, but it does not work  (
>
> https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_argo-2Dnactem_nactem-2Dtype-2Dmapper=DwIBaQ=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU=Heup-IbsIg9Q1TPOylpP9FE4GTK-OqdTDRRNQXipowRLRjx0ibQrHEo8uYx6674h=OpaELc8Grwv2E1s2bEQTdL8LDw39-LJdnTMrUg6g6wI=DOFLsY1vAaBiOUXHNn3FuggLUuZBT4-DbwRnNH47xMQ=
> )
>
>
> With Best Wishes,
> Siamak
>


-- 
Siamak Barzegar, PhD.
Senior Research Engineer.
Biomedical Text Mining Unit.
Barcelona Supercomputing Centre


RE: Convert type system of a component to cTakes typesysem [EXTERNAL]

2019-06-07 Thread Miller, Timothy
I don't have much experience with Heideltime, but I think this would be a great 
addition to ctakes, so if you know Heideltime a bit and you're willing to put 
in the effort I'm happy to help with your understanding the typesystem. I don't 
know that there's an easy way of 'converting' other than just writing some java 
code in a UIMA analysis engine that converts UIMA types to whatever Heideltime 
reads, makes a call to Heideltime, and then iterates over types output from 
Heideltime and creating the equivalent UIMA types. If you have some more info 
on what sort of conversion you had in mind let me know.
Tim

-Original Message-
From: Siamak Barzegar  
Sent: Thursday, June 6, 2019 5:59 AM
To: dev@ctakes.apache.org
Subject: Convert type system of a component to cTakes typesysem [EXTERNAL]

Dear All,

I want to integrate HeidelTime project (
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_HeidelTime_heideltime=DwIBaQ=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU=Heup-IbsIg9Q1TPOylpP9FE4GTK-OqdTDRRNQXipowRLRjx0ibQrHEo8uYx6674h=OpaELc8Grwv2E1s2bEQTdL8LDw39-LJdnTMrUg6g6wI=zze0700gfvrFb8vk0FxhQfRq25AsRVyy2p8RUbQK3-c=)
 as a component into cTakes to use it with other components in ctakes (to build 
a pipeline for my task) But the problem is two projects (HeidelTime and cTakes) 
have different typesystems.

is there anyway to convert heidelTime typesystem to cTakes one?

PS: It seems Nactem had a code for it, but it does not work  (
https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_argo-2Dnactem_nactem-2Dtype-2Dmapper=DwIBaQ=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU=Heup-IbsIg9Q1TPOylpP9FE4GTK-OqdTDRRNQXipowRLRjx0ibQrHEo8uYx6674h=OpaELc8Grwv2E1s2bEQTdL8LDw39-LJdnTMrUg6g6wI=DOFLsY1vAaBiOUXHNn3FuggLUuZBT4-DbwRnNH47xMQ=)


With Best Wishes,
Siamak