Re: Question about CPE/ descriptor and xml file.

2015-01-05 Thread Maite Meseure Hugues
Thank you for your quick answer, I am going to double check these points.


On Mon, Jan 5, 2015 at 9:19 AM, Finan, Sean <
sean.fi...@childrens.harvard.edu> wrote:

> Go through the error that you got, and look for a message like:
>
> Failed to initilize.  Invalid UMLS License
>
> and
>
> Error: Invalid UMLS License.  A UMLS License is required to use the UMLS
> dictionary lookup.
> Error: You may request one at: https://uts.nlm.nih.gov/license.html
> Please verify your UMLS license settings in the
> DictionaryLookupAnnotatorUMLS.xml configuration.
>
> If you see that message, you see a possible solution.  If you have a umls
> username and password, make sure that they are set correctly for the cTakes
> run.
>
> If you don't see that message, check
> resources/org/apache/ctakes/dictionary/lookup/umls2011ab/umls and see if it
> contains a rather large .data file.  If not, then go through the process
> detailed at http://ctakes.apache.org/downloads.cgi in the section
> entitled "Resources".
>
> If you have the .data file, then let us know and we'll try to push forward.
>
> Sean
>
>
> -Original Message-
> From: Maite Meseure Hugues [mailto:mmhug...@medmergent.com]
> Sent: Monday, January 05, 2015 9:33 AM
> To: dev@ctakes.apache.org
> Subject: Question about CPE/ descriptor and xml file.
>
> Hello everyone,
>
>
> I am a new user of cTakes and I would like to integrate it in my code to
> run it programmatically.
>
> I followed the example in the cTakes package but I have an error message
> regarding the descriptor:
>
>
> [...] 03 Jan 2015 13:39:33  INFO UmlsDictionaryLookupAnnotator - Using
> ctakes.umlsaddr: https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser:
> maitemeseure
>
> Exception in thread "main"
> org.apache.uima.resource.ResourceInitializationException: Initialization of
> annotator class
> "org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator"
> failed.  (Descriptor: )
>
> Do you know how I can fix that?? My goal is to get in output the same XML
> file than the CPE.
> Thanks a lot for your time.
>
> Best regards,
>
> Maite Meseure
>
>


-- 
--
 Maïté Meseure Hugues


RE: Question about CPE/ descriptor and xml file.

2015-01-05 Thread Finan, Sean
Go through the error that you got, and look for a message like:

Failed to initilize.  Invalid UMLS License

and

Error: Invalid UMLS License.  A UMLS License is required to use the UMLS 
dictionary lookup. 
Error: You may request one at: https://uts.nlm.nih.gov/license.html 
Please verify your UMLS license settings in the 
DictionaryLookupAnnotatorUMLS.xml configuration.

If you see that message, you see a possible solution.  If you have a umls 
username and password, make sure that they are set correctly for the cTakes run.

If you don't see that message, check 
resources/org/apache/ctakes/dictionary/lookup/umls2011ab/umls and see if it 
contains a rather large .data file.  If not, then go through the process 
detailed at http://ctakes.apache.org/downloads.cgi in the section entitled 
"Resources".

If you have the .data file, then let us know and we'll try to push forward.

Sean


-Original Message-
From: Maite Meseure Hugues [mailto:mmhug...@medmergent.com] 
Sent: Monday, January 05, 2015 9:33 AM
To: dev@ctakes.apache.org
Subject: Question about CPE/ descriptor and xml file.

Hello everyone,


I am a new user of cTakes and I would like to integrate it in my code to run it 
programmatically.

I followed the example in the cTakes package but I have an error message 
regarding the descriptor:


[...] 03 Jan 2015 13:39:33  INFO UmlsDictionaryLookupAnnotator - Using 
ctakes.umlsaddr: https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser: 
maitemeseure

Exception in thread "main" 
org.apache.uima.resource.ResourceInitializationException: Initialization of 
annotator class 
"org.apache.ctakes.dictionary.lookup.ae.UmlsDictionaryLookupAnnotator" failed.  
(Descriptor: )

Do you know how I can fix that?? My goal is to get in output the same XML file 
than the CPE.
Thanks a lot for your time.

Best regards,

Maite Meseure