RE: ytex merged into trunk
Hi Vijay, I did a checkout this morning and I'm getting compile errors from Maven. If I just run mvn compile then I get an error while building ytex claiming that the package has not been created. Is there a reversed dependency? If I run mvn compile package then ytex seems to run through, but there is an error in the test of ytex-uima (see below). Any ideas? Thanks, Sean Running org.apache.ctakes.ytex.uima.annotators.SparseDataExporterTest ... 2014-04-28 10:50:43,074 INFO org.hibernate.dialect.Dialect - HHH000400: Using dialect: org.hibernate.dialect.HSQLDialect 2014-04-28 10:50:43,112 WARN org.hibernate.engine.jdbc.spi.SqlExceptionHelper - SQL Error: -22, SQLState: S0002 2014-04-28 10:50:43,112 ERROR org.hibernate.engine.jdbc.spi.SqlExceptionHelper - Table not found in statement [select uimatype0_.ui ma_type_id as uima_typ1_21_, uimatype0_.uima_type_name as uima_typ2_21_, uimatype0_.table_name as table_na3_21_ from PUBLIC.ref_uima _type uimatype0_] ... Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 6.277 sec FAILURE! Results : Tests in error: test(org.apache.ctakes.ytex.uima.annotators.DBCollectionReaderTest): Unable to initialize group definition. Group resource name [c lasspath*:org/apache/ctakes/ytex/uima/beanRefContext.xml], factory key [ytexApplicationContext]; nested exception is org.springframe work.beans.factory.BeanCreationException: Error creating bean with name 'ytexApplicationContext' defined in URL [file:/C:/Spiffy/Dev /ApacheCtakesTrunk/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [org.springframework.con text.support.ClassPathXmlApplicationContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.Bea nCreationException: Error creating bean with name 'documentMapperService' defined in class path resource [org/apache/ctakes/ytex/uim a/beans-uima-mapper.xml]: Invocation of init method failed; nested exception is org.hibernate.exception.SQLGrammarException: could n ot prepare statement org.apache.ctakes.ytex.uima.annotators.DBConsumerTest: Unable to initialize group definition. Group resource name [classpath*:org/ apache/ctakes/ytex/uima/beanRefContext.xml], factory key [ytexApplicationContext]; nested exception is org.springframework.beans.fac tory.BeanCreationException: Error creating bean with name 'ytexApplicationContext' defined in URL [file:/C:/Spiffy/Dev/ApacheCtakesT runk/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]: Instantiation of bean failed; nested except ion is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [org.springframework.context.support.C lassPathXmlApplicationContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationExcep tion: Error creating bean with name 'documentMapperService' defined in class path resource [org/apache/ctakes/ytex/uima/beans-uima-m apper.xml]: Invocation of init method failed; nested exception is org.hibernate.exception.SQLGrammarException: could not prepare sta tement org.apache.ctakes.ytex.uima.annotators.DBConsumerTest testDictionaryLookupIntegrated(org.apache.ctakes.ytex.uima.annotators.DictionaryLookupAnnotatorTest): Initialization of annotator class org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator failed. (Descriptor: file:/C:/Spiffy/Dev/ApacheCtakesTrunk/cta kes-ytex-uima/desc/analysis_engine/SegmentRegexAnnotator.xml) testDictionaryLookupSimple(org.apache.ctakes.ytex.uima.annotators.DictionaryLookupAnnotatorTest) testDisambiguate(org.apache.ctakes.ytex.uima.annotators.SenseDisambiguatorAnnotatorTest): Unable to initialize group definition. G roup resource name [classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml], factory key [ytexApplicationContext]; nested excepti on is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ytexApplicationContext' defined in URL [file:/C:/Spiffy/Dev/ApacheCtakesTrunk/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]: Instanti ation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [or g.springframework.context.support.ClassPathXmlApplicationContext]: Constructor threw exception; nested exception is org.springframew ork.beans.factory.BeanCreationException: Error creating bean with name 'documentMapperService' defined in class path resource [org/a pache/ctakes/ytex/uima/beans-uima-mapper.xml]: Invocation of init method failed; nested exception is org.hibernate.exception.SQLGram marException: could not prepare statement org.apache.ctakes.ytex.uima.annotators.SparseDataExporterTest: Unable to initialize group definition. Group resource name
Re: ytex merged into trunk
sorry about that. I will investigate. -vj On Mon, Apr 28, 2014 at 11:00 AM, Finan, Sean sean.fi...@childrens.harvard.edu wrote: Hi Vijay, I did a checkout this morning and I'm getting compile errors from Maven. If I just run mvn compile then I get an error while building ytex claiming that the package has not been created. Is there a reversed dependency? If I run mvn compile package then ytex seems to run through, but there is an error in the test of ytex-uima (see below). Any ideas? Thanks, Sean Running org.apache.ctakes.ytex.uima.annotators.SparseDataExporterTest ... 2014-04-28 10:50:43,074 INFO org.hibernate.dialect.Dialect - HHH000400: Using dialect: org.hibernate.dialect.HSQLDialect 2014-04-28 10:50:43,112 WARN org.hibernate.engine.jdbc.spi.SqlExceptionHelper - SQL Error: -22, SQLState: S0002 2014-04-28 10:50:43,112 ERROR org.hibernate.engine.jdbc.spi.SqlExceptionHelper - Table not found in statement [select uimatype0_.ui ma_type_id as uima_typ1_21_, uimatype0_.uima_type_name as uima_typ2_21_, uimatype0_.table_name as table_na3_21_ from PUBLIC.ref_uima _type uimatype0_] ... Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 6.277 sec FAILURE! Results : Tests in error: test(org.apache.ctakes.ytex.uima.annotators.DBCollectionReaderTest): Unable to initialize group definition. Group resource name [c lasspath*:org/apache/ctakes/ytex/uima/beanRefContext.xml], factory key [ytexApplicationContext]; nested exception is org.springframe work.beans.factory.BeanCreationException: Error creating bean with name 'ytexApplicationContext' defined in URL [file:/C:/Spiffy/Dev /ApacheCtakesTrunk/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [org.springframework.con text.support.ClassPathXmlApplicationContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.Bea nCreationException: Error creating bean with name 'documentMapperService' defined in class path resource [org/apache/ctakes/ytex/uim a/beans-uima-mapper.xml]: Invocation of init method failed; nested exception is org.hibernate.exception.SQLGrammarException: could n ot prepare statement org.apache.ctakes.ytex.uima.annotators.DBConsumerTest: Unable to initialize group definition. Group resource name [classpath*:org/ apache/ctakes/ytex/uima/beanRefContext.xml], factory key [ytexApplicationContext]; nested exception is org.springframework.beans.fac tory.BeanCreationException: Error creating bean with name 'ytexApplicationContext' defined in URL [file:/C:/Spiffy/Dev/ApacheCtakesT runk/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]: Instantiation of bean failed; nested except ion is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [org.springframework.context.support.C lassPathXmlApplicationContext]: Constructor threw exception; nested exception is org.springframework.beans.factory.BeanCreationExcep tion: Error creating bean with name 'documentMapperService' defined in class path resource [org/apache/ctakes/ytex/uima/beans-uima-m apper.xml]: Invocation of init method failed; nested exception is org.hibernate.exception.SQLGrammarException: could not prepare sta tement org.apache.ctakes.ytex.uima.annotators.DBConsumerTest testDictionaryLookupIntegrated(org.apache.ctakes.ytex.uima.annotators.DictionaryLookupAnnotatorTest): Initialization of annotator class org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator failed. (Descriptor: file:/C:/Spiffy/Dev/ApacheCtakesTrunk/cta kes-ytex-uima/desc/analysis_engine/SegmentRegexAnnotator.xml) testDictionaryLookupSimple(org.apache.ctakes.ytex.uima.annotators.DictionaryLookupAnnotatorTest) testDisambiguate(org.apache.ctakes.ytex.uima.annotators.SenseDisambiguatorAnnotatorTest): Unable to initialize group definition. G roup resource name [classpath*:org/apache/ctakes/ytex/uima/beanRefContext.xml], factory key [ytexApplicationContext]; nested excepti on is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ytexApplicationContext' defined in URL [file:/C:/Spiffy/Dev/ApacheCtakesTrunk/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]: Instanti ation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [or g.springframework.context.support.ClassPathXmlApplicationContext]: Constructor threw exception; nested exception is org.springframew ork.beans.factory.BeanCreationException: Error creating bean with name 'documentMapperService' defined in class path resource [org/a pache/ctakes/ytex/uima/beans-uima-mapper.xml]: Invocation of init method failed; nested exception is
RE: ytex merged into trunk
Completely new error. I have taken this offline until we figure out what is
going on.
-Original Message-
From: vijay garla [mailto:vnga...@gmail.com]
Sent: Monday, April 28, 2014 1:47 PM
To: dev@ctakes.apache.org
Subject: Re: ytex merged into trunk
Hello All,
I can't reproduce this build error. It appears that maven does not want to run
copy-dependencies in the compile phase. However, I have tried building this
with maven 3.2.1 and maven 3.1.0 and it works fine for both.
@Sean - can you send me the output of mvn -x clean install -pl ctakes-ytex
(executed from ctakes root dir)
This is the plugin that maven is complaining about:
plugin
groupIdorg.apache.maven.plugins/groupId
artifactIdmaven-dependency-plugin/artifactId
executions
execution
idcopy-dependencies/id
phasecompile/phase
goals
goalcopy-dependencies/goal
/goals
configuration
outputDirectory${basedir}/target/lib/outputDirectory
overWriteReleasesfalse/overWriteReleases
overWriteSnapshotsfalse/overWriteSnapshots
overWriteIfNewertrue/overWriteIfNewer
/configuration
/execution
/executions
/plugin
On Mon, Apr 28, 2014 at 1:26 PM, vijay garla vnga...@gmail.com wrote:
sorry about that. I will investigate.
-vj
On Mon, Apr 28, 2014 at 11:00 AM, Finan, Sean
sean.fi...@childrens.harvard.edu wrote:
Hi Vijay,
I did a checkout this morning and I'm getting compile errors from Maven.
If I just run mvn compile then I get an error while building ytex
claiming that the package has not been created. Is there a reversed
dependency?
If I run mvn compile package then ytex seems to run through, but
there is an error in the test of ytex-uima (see below).
Any ideas?
Thanks,
Sean
Running org.apache.ctakes.ytex.uima.annotators.SparseDataExporterTest
...
2014-04-28 10:50:43,074 INFO org.hibernate.dialect.Dialect - HHH000400:
Using dialect: org.hibernate.dialect.HSQLDialect
2014-04-28 10:50:43,112 WARN
org.hibernate.engine.jdbc.spi.SqlExceptionHelper - SQL Error: -22,
SQLState: S0002
2014-04-28 10:50:43,112 ERROR
org.hibernate.engine.jdbc.spi.SqlExceptionHelper - Table not found
in statement [select uimatype0_.ui ma_type_id as uima_typ1_21_,
uimatype0_.uima_type_name as uima_typ2_21_, uimatype0_.table_name as
table_na3_21_ from PUBLIC.ref_uima _type uimatype0_] ...
Tests run: 1, Failures: 0, Errors: 1, Skipped: 0, Time elapsed: 6.277
sec FAILURE!
Results :
Tests in error:
test(org.apache.ctakes.ytex.uima.annotators.DBCollectionReaderTest):
Unable to initialize group definition. Group resource name [c
lasspath*:org/apache/ctakes/ytex/uima/beanRefContext.xml], factory
key [ytexApplicationContext]; nested exception is org.springframe
work.beans.factory.BeanCreationException: Error creating bean with
name 'ytexApplicationContext' defined in URL [file:/C:/Spiffy/Dev
/ApacheCtakesTrunk/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]:
Instantiation of bean failed;
nested exception is
org.springframework.beans.BeanInstantiationException: Could not
instantiate bean class [org.springframework.con
text.support.ClassPathXmlApplicationContext]: Constructor threw
exception; nested exception is org.springframework.beans.factory.Bea
nCreationException: Error creating bean with name 'documentMapperService'
defined in class path resource [org/apache/ctakes/ytex/uim
a/beans-uima-mapper.xml]: Invocation of init method failed; nested
exception is org.hibernate.exception.SQLGrammarException: could n ot
prepare statement
org.apache.ctakes.ytex.uima.annotators.DBConsumerTest: Unable to
initialize group definition. Group resource name [classpath*:org/
apache/ctakes/ytex/uima/beanRefContext.xml], factory key
[ytexApplicationContext]; nested exception is
org.springframework.beans.fac
tory.BeanCreationException: Error creating bean with name
'ytexApplicationContext' defined in URL
[file:/C:/Spiffy/Dev/ApacheCtakesT
runk/ctakes-ytex-res/src/main/resources/org/apache/ctakes/ytex/uima/beanRefContext.xml]:
Instantiation of bean failed; nested except ion is
org.springframework.beans.BeanInstantiationException: Could not
instantiate bean class [org.springframework.context.support.C
lassPathXmlApplicationContext]: Constructor threw exception; nested
exception is org.springframework.beans.factory.BeanCreationExcep
tion: Error creating bean with name 'documentMapperService' defined
in class path resource [org/apache/ctakes/ytex/uima/beans-uima-m
apper.xml]: Invocation of init method failed; nested exception is
org.hibernate.exception.SQLGrammarException: could not prepare sta
tement
org.apache.ctakes.ytex.uima.annotators.DBConsumerTest
testDictionaryLookupIntegrated(org.apache.ctakes.ytex.uima.annotators.DictionaryLookupAnnotatorTest):
Initialization of annotator
class org.apache.ctakes.ytex.uima.annotators.SegmentRegexAnnotator
failed. (Descriptor: file:/C:/Spiffy/Dev/ApacheCtakesTrunk/cta
kes-ytex-uima/desc/analysis_engine
