[GitHub] iverase commented on a change in pull request #556: LUCENE-8673: Use radix partitioning when merging dimensional points

2019-02-06 Thread GitBox
iverase commented on a change in pull request #556: LUCENE-8673: Use radix 
partitioning when merging dimensional points
URL: https://github.com/apache/lucene-solr/pull/556#discussion_r254560658
 
 

 ##
 File path: lucene/core/src/java/org/apache/lucene/util/bkd/BKDWriter.java
 ##
 @@ -194,40 +169,28 @@ protected BKDWriter(int maxDoc, Directory tempDir, 
String tempFileNamePrefix, in
 minPackedValue = new byte[packedIndexBytesLength];
 maxPackedValue = new byte[packedIndexBytesLength];
 
-// If we may have more than 1+Integer.MAX_VALUE values, then we must 
encode ords with long (8 bytes), else we can use int (4 bytes).
-this.longOrds = longOrds;
-
-this.singleValuePerDoc = singleValuePerDoc;
+// dimensional values (numDims * bytesPerDim) + docID (int)
+bytesPerDoc = packedBytesLength + Integer.BYTES;
 
-// dimensional values (numDims * bytesPerDim) + ord (int or long) + docID 
(int)
-if (singleValuePerDoc) {
-  // Lucene only supports up to 2.1 docs, so we better not need longOrds 
in this case:
-  assert longOrds == false;
-  bytesPerDoc = packedBytesLength + Integer.BYTES;
-} else if (longOrds) {
-  bytesPerDoc = packedBytesLength + Long.BYTES + Integer.BYTES;
-} else {
-  bytesPerDoc = packedBytesLength + Integer.BYTES + Integer.BYTES;
-}
 
 // As we recurse, we compute temporary partitions of the data, halving the
 // number of points at each recursion.  Once there are few enough points,
 // we can switch to sorting in heap instead of offline (on disk).  At any
 // time in the recursion, we hold the number of points at that level, plus
 // all recursive halves (i.e. 16 + 8 + 4 + 2) so the memory usage is 2X
 // what that level would consume, so we multiply by 0.5 to convert from
-// bytes to points here.  Each dimension has its own sorted partition, so
-// we must divide by numDims as wel.
+// bytes to points here.  In addition the radix partitioning may sort on 
memory
+// double of this size so we multiply by another 0.5.
 
-maxPointsSortInHeap = (int) (0.5 * (maxMBSortInHeap * 1024 * 1024) / 
(bytesPerDoc * numDataDims));
+maxPointsSortInHeap = (int) (0.25 * (maxMBSortInHeap * 1024 * 1024) / 
(bytesPerDoc));
 
 Review comment:
   This is due to the fact that BKDRadixSelector can build a buffer up to `2 * 
maxPointsSortInHeap`. Thinking about it, it might not be ideal(we are not using 
all available heap) but I have in mind a follow up issue where this will be 
handled better so I will keep it like that.


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[GitHub] iverase commented on a change in pull request #556: LUCENE-8673: Use radix partitioning when merging dimensional points

2019-02-06 Thread GitBox
iverase commented on a change in pull request #556: LUCENE-8673: Use radix 
partitioning when merging dimensional points
URL: https://github.com/apache/lucene-solr/pull/556#discussion_r254296091
 
 

 ##
 File path: 
lucene/core/src/java/org/apache/lucene/util/bkd/BKDRadixSelector.java
 ##
 @@ -0,0 +1,311 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.lucene.util.bkd;
+
+import java.io.IOException;
+import java.util.Arrays;
+
+import org.apache.lucene.store.Directory;
+import org.apache.lucene.util.BytesRef;
+import org.apache.lucene.util.FutureArrays;
+import org.apache.lucene.util.RadixSelector;
+
+
+/**
+ *
+ * Offline Radix selector for BKD tree.
+ *
+ *  @lucene.internal
+ * */
+public final class BKDRadixSelector {
+  //size of the histogram
+  private static final int HISTOGRAM_SIZE = 256;
+  //size of the online buffer: 8 KB
+  private static final int MAX_SIZE_OFFLINE_BUFFER = 1024 * 8;
+  // we store one histogram per recursion level
+  private final long[][] histogram;
+  //bytes per dimension
+  private final int bytesPerDim;
+  // number of bytes to be sorted: bytesPerDim + Integer.BYTES
+  private final int bytesSorted;
+  //data dimensions size
+  private final int packedBytesLength;
+  //flag to when we are moving to sort on heap
+  private final int maxPointsSortInHeap;
+  //reusable buffer
+  private final byte[] offlineBuffer;
+  //holder for partition points
+  private final int[] partitionBucket;
+  // scratch object to move bytes around
+  private final BytesRef bytesRef1 = new BytesRef();
+  // scratch object to move bytes around
+  private final BytesRef bytesRef2 = new BytesRef();
+  //Directory to create new Offline writer
+  private final Directory tempDir;
+  // prefix for temp files
+  private final String tempFileNamePrefix;
+
+  /**
+   * Sole constructor.
+   */
+  public BKDRadixSelector(int numDim, int bytesPerDim, int 
maxPointsSortInHeap, Directory tempDir, String tempFileNamePrefix) {
+this.bytesPerDim = bytesPerDim;
+this.packedBytesLength = numDim * bytesPerDim;
+this.bytesSorted = bytesPerDim + Integer.BYTES;
+this.maxPointsSortInHeap = 2 * maxPointsSortInHeap;
+int numberOfPointsOffline  = MAX_SIZE_OFFLINE_BUFFER / (packedBytesLength 
+ Integer.BYTES);
+this.offlineBuffer = new byte[numberOfPointsOffline * (packedBytesLength + 
Integer.BYTES)];
+this.partitionBucket = new int[bytesSorted];
+this.histogram = new long[bytesSorted][HISTOGRAM_SIZE];
+this.bytesRef1.length = numDim * bytesPerDim;
+this.tempDir = tempDir;
+this.tempFileNamePrefix = tempFileNamePrefix;
+  }
+
+  /**
+   *
+   * Method to partition the input data. It returns the value of the dimension 
where
+   * the split happens. The method destroys the original writer.
+   *
+   */
+  public byte[] select(PointWriter points, PointWriter left, PointWriter 
right, long from, long to, long partitionPoint, int dim) throws IOException {
 
 Review comment:
   Of course this needs a bit of work because left and right `PointWriters` 
should then be created inside this object.


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[GitHub] iverase commented on a change in pull request #556: LUCENE-8673: Use radix partitioning when merging dimensional points

2019-02-06 Thread GitBox
iverase commented on a change in pull request #556: LUCENE-8673: Use radix 
partitioning when merging dimensional points
URL: https://github.com/apache/lucene-solr/pull/556#discussion_r254294954
 
 

 ##
 File path: 
lucene/core/src/java/org/apache/lucene/util/bkd/BKDRadixSelector.java
 ##
 @@ -0,0 +1,311 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.lucene.util.bkd;
+
+import java.io.IOException;
+import java.util.Arrays;
+
+import org.apache.lucene.store.Directory;
+import org.apache.lucene.util.BytesRef;
+import org.apache.lucene.util.FutureArrays;
+import org.apache.lucene.util.RadixSelector;
+
+
+/**
+ *
+ * Offline Radix selector for BKD tree.
+ *
+ *  @lucene.internal
+ * */
+public final class BKDRadixSelector {
+  //size of the histogram
+  private static final int HISTOGRAM_SIZE = 256;
+  //size of the online buffer: 8 KB
+  private static final int MAX_SIZE_OFFLINE_BUFFER = 1024 * 8;
+  // we store one histogram per recursion level
+  private final long[][] histogram;
+  //bytes per dimension
+  private final int bytesPerDim;
+  // number of bytes to be sorted: bytesPerDim + Integer.BYTES
+  private final int bytesSorted;
+  //data dimensions size
+  private final int packedBytesLength;
+  //flag to when we are moving to sort on heap
+  private final int maxPointsSortInHeap;
+  //reusable buffer
+  private final byte[] offlineBuffer;
+  //holder for partition points
+  private final int[] partitionBucket;
+  // scratch object to move bytes around
+  private final BytesRef bytesRef1 = new BytesRef();
+  // scratch object to move bytes around
+  private final BytesRef bytesRef2 = new BytesRef();
+  //Directory to create new Offline writer
+  private final Directory tempDir;
+  // prefix for temp files
+  private final String tempFileNamePrefix;
+
+  /**
+   * Sole constructor.
+   */
+  public BKDRadixSelector(int numDim, int bytesPerDim, int 
maxPointsSortInHeap, Directory tempDir, String tempFileNamePrefix) {
+this.bytesPerDim = bytesPerDim;
+this.packedBytesLength = numDim * bytesPerDim;
+this.bytesSorted = bytesPerDim + Integer.BYTES;
+this.maxPointsSortInHeap = 2 * maxPointsSortInHeap;
+int numberOfPointsOffline  = MAX_SIZE_OFFLINE_BUFFER / (packedBytesLength 
+ Integer.BYTES);
+this.offlineBuffer = new byte[numberOfPointsOffline * (packedBytesLength + 
Integer.BYTES)];
+this.partitionBucket = new int[bytesSorted];
+this.histogram = new long[bytesSorted][HISTOGRAM_SIZE];
+this.bytesRef1.length = numDim * bytesPerDim;
+this.tempDir = tempDir;
+this.tempFileNamePrefix = tempFileNamePrefix;
+  }
+
+  /**
+   *
+   * Method to partition the input data. It returns the value of the dimension 
where
+   * the split happens. The method destroys the original writer.
+   *
+   */
+  public byte[] select(PointWriter points, PointWriter left, PointWriter 
right, long from, long to, long partitionPoint, int dim) throws IOException {
 
 Review comment:
   At the moment no, but one of the improvements it can be done is to re-use 
the idea of path slices on the previous versions and keep just the first 
`HeapPointWriter`. Then you do not need to copy bytes between heap objects and 
just adjust the start end end points for the different levels.


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[GitHub] iverase commented on a change in pull request #556: LUCENE-8673: Use radix partitioning when merging dimensional points

2019-02-04 Thread GitBox
iverase commented on a change in pull request #556: LUCENE-8673: Use radix 
partitioning when merging dimensional points
URL: https://github.com/apache/lucene-solr/pull/556#discussion_r253495525
 
 

 ##
 File path: 
lucene/core/src/java/org/apache/lucene/util/bkd/BKDRadixSelector.java
 ##
 @@ -0,0 +1,433 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.lucene.util.bkd;
+
+import java.io.IOException;
+import java.util.Arrays;
+
+import org.apache.lucene.store.Directory;
+import org.apache.lucene.util.BytesRef;
+import org.apache.lucene.util.FutureArrays;
+import org.apache.lucene.util.IntroSelector;
+
+/**
+ *
+ * Offline Radix selector for BKD tree.
+ *
+ *  @lucene.internal
+ * */
+public final class BKDRadixSelector {
+  //size of the histogram
+  private static final int HISTOGRAM_SIZE = 256;
+  // we store one histogram per recursion level
+  private final long[][] histogram;
+  //bytes we are sorting
+  private final int bytesPerDim;
+  // number of bytes to be sorted: bytesPerDim + Integer.BYTES
+  private final int bytesSorted;
+  //data dimensions size
+  private final int packedBytesLength;
+  //flag to when we are moving to sort on heap
+  private final int maxPointsSortedOffHeap;
+  //reusable buffer
+  private final byte[] offlineBuffer;
+  //holder for partition points
+  private final int[] partitionBucket;
+  //holder for partition bytes
+  private final byte[] partitionBytes;
+  //re-usable on-heap selector
+  private final HeapSelector heapSelector;
+  // scratch object to move bytes around
+  private final BytesRef bytesRef1 = new BytesRef();
+  // scratch object to move bytes around
+  private final BytesRef bytesRef2 = new BytesRef();
+  //Directory to create new Offline writer
+  private final Directory tempDir;
+  // prefix for temp files
+  private final String tempFileNamePrefix;
+
+
+
+  /**
+   * Sole constructor.
+   */
+  public BKDRadixSelector(int numDim, int bytesPerDim, int 
maxPointsSortedOffHeap, Directory tempDir, String tempFileNamePrefix) {
+this.bytesPerDim = bytesPerDim;
+this.packedBytesLength = numDim * bytesPerDim;
+this.bytesSorted = bytesPerDim + Integer.BYTES;
+this.maxPointsSortedOffHeap = maxPointsSortedOffHeap;
+this.offlineBuffer = new byte[maxPointsSortedOffHeap * (packedBytesLength 
+ Integer.BYTES)];
+this.partitionBucket = new int[bytesSorted];
+this.partitionBytes =  new byte[bytesSorted];
+this.histogram = new long[bytesSorted][HISTOGRAM_SIZE];
+this.bytesRef1.length = numDim * bytesPerDim;
+this.heapSelector = new HeapSelector(numDim, bytesPerDim);
+this.tempDir = tempDir;
+this.tempFileNamePrefix = tempFileNamePrefix;
+  }
+
+  /**
+   * Method to partition the input data. It returns the value of the dimension 
where
+   * the split happens.
+   */
+  public byte[] select(PointWriter points, PointWriter left, PointWriter 
right, long from, long to, long partitionPoint, int dim) throws IOException {
+checkArgs(from, to, partitionPoint);
+
+//If we are on heap then we just select on heap
+if (points instanceof HeapPointWriter) {
+  return heapSelect((HeapPointWriter) points, left, right, dim, 
Math.toIntExact(from), Math.toIntExact(to),  Math.toIntExact(partitionPoint), 
0);
+}
+
+//reset histogram
+for (int i = 0; i < bytesSorted; i++) {
+  Arrays.fill(histogram[i], 0);
+}
+OfflinePointWriter offlinePointWriter = (OfflinePointWriter) points;
+
+//find common prefix, it does already set histogram values if needed
+int commonPrefix = findCommonPrefix(offlinePointWriter, from, to, dim);
+
+//if all equals we just partition the data
+if (commonPrefix ==  bytesSorted) {
+  return partition(offlinePointWriter, left, right, from, to, 
partitionPoint, dim, null, commonPrefix - 1, partitionPoint);
+}
+//let's rock'n'roll
+return buildHistogramAndPartition(offlinePointWriter, null, left, right, 
from, to, partitionPoint, 0, commonPrefix, dim,0, 0);
+  }
+
+  void checkArgs(long from, long to, long middle) {
+if (middle < from) {
+  throw new IllegalArgumentException("middle must be >= from");
+}
+if (middle >= to) {
+  throw new I

[GitHub] iverase commented on a change in pull request #556: LUCENE-8673: Use radix partitioning when merging dimensional points

2019-02-04 Thread GitBox
iverase commented on a change in pull request #556: LUCENE-8673: Use radix 
partitioning when merging dimensional points
URL: https://github.com/apache/lucene-solr/pull/556#discussion_r253401456
 
 

 ##
 File path: 
lucene/core/src/java/org/apache/lucene/util/bkd/BKDRadixSelector.java
 ##
 @@ -0,0 +1,433 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.lucene.util.bkd;
+
+import java.io.IOException;
+import java.util.Arrays;
+
+import org.apache.lucene.store.Directory;
+import org.apache.lucene.util.BytesRef;
+import org.apache.lucene.util.FutureArrays;
+import org.apache.lucene.util.IntroSelector;
+
+/**
+ *
+ * Offline Radix selector for BKD tree.
+ *
+ *  @lucene.internal
+ * */
+public final class BKDRadixSelector {
+  //size of the histogram
+  private static final int HISTOGRAM_SIZE = 256;
+  // we store one histogram per recursion level
+  private final long[][] histogram;
+  //bytes we are sorting
+  private final int bytesPerDim;
+  // number of bytes to be sorted: bytesPerDim + Integer.BYTES
+  private final int bytesSorted;
+  //data dimensions size
+  private final int packedBytesLength;
+  //flag to when we are moving to sort on heap
+  private final int maxPointsSortedOffHeap;
+  //reusable buffer
+  private final byte[] offlineBuffer;
+  //holder for partition points
+  private final int[] partitionBucket;
+  //holder for partition bytes
+  private final byte[] partitionBytes;
+  //re-usable on-heap selector
+  private final HeapSelector heapSelector;
+  // scratch object to move bytes around
+  private final BytesRef bytesRef1 = new BytesRef();
+  // scratch object to move bytes around
+  private final BytesRef bytesRef2 = new BytesRef();
+  //Directory to create new Offline writer
+  private final Directory tempDir;
+  // prefix for temp files
+  private final String tempFileNamePrefix;
+
+
+
+  /**
+   * Sole constructor.
+   */
+  public BKDRadixSelector(int numDim, int bytesPerDim, int 
maxPointsSortedOffHeap, Directory tempDir, String tempFileNamePrefix) {
+this.bytesPerDim = bytesPerDim;
+this.packedBytesLength = numDim * bytesPerDim;
+this.bytesSorted = bytesPerDim + Integer.BYTES;
+this.maxPointsSortedOffHeap = maxPointsSortedOffHeap;
+this.offlineBuffer = new byte[maxPointsSortedOffHeap * (packedBytesLength 
+ Integer.BYTES)];
+this.partitionBucket = new int[bytesSorted];
+this.partitionBytes =  new byte[bytesSorted];
+this.histogram = new long[bytesSorted][HISTOGRAM_SIZE];
+this.bytesRef1.length = numDim * bytesPerDim;
+this.heapSelector = new HeapSelector(numDim, bytesPerDim);
+this.tempDir = tempDir;
+this.tempFileNamePrefix = tempFileNamePrefix;
+  }
+
+  /**
+   * Method to partition the input data. It returns the value of the dimension 
where
+   * the split happens.
+   */
+  public byte[] select(PointWriter points, PointWriter left, PointWriter 
right, long from, long to, long partitionPoint, int dim) throws IOException {
+checkArgs(from, to, partitionPoint);
+
+//If we are on heap then we just select on heap
+if (points instanceof HeapPointWriter) {
+  return heapSelect((HeapPointWriter) points, left, right, dim, 
Math.toIntExact(from), Math.toIntExact(to),  Math.toIntExact(partitionPoint), 
0);
+}
+
+//reset histogram
+for (int i = 0; i < bytesSorted; i++) {
+  Arrays.fill(histogram[i], 0);
+}
+OfflinePointWriter offlinePointWriter = (OfflinePointWriter) points;
+
+//find common prefix, it does already set histogram values if needed
+int commonPrefix = findCommonPrefix(offlinePointWriter, from, to, dim);
+
+//if all equals we just partition the data
+if (commonPrefix ==  bytesSorted) {
+  return partition(offlinePointWriter, left, right, from, to, 
partitionPoint, dim, null, commonPrefix - 1, partitionPoint);
+}
+//let's rock'n'roll
+return buildHistogramAndPartition(offlinePointWriter, null, left, right, 
from, to, partitionPoint, 0, commonPrefix, dim,0, 0);
+  }
+
+  void checkArgs(long from, long to, long middle) {
+if (middle < from) {
+  throw new IllegalArgumentException("middle must be >= from");
+}
+if (middle >= to) {
+  throw new I

[GitHub] iverase commented on a change in pull request #556: LUCENE-8673: Use radix partitioning when merging dimensional points

2019-02-04 Thread GitBox
iverase commented on a change in pull request #556: LUCENE-8673: Use radix 
partitioning when merging dimensional points
URL: https://github.com/apache/lucene-solr/pull/556#discussion_r253400942
 
 

 ##
 File path: 
lucene/core/src/java/org/apache/lucene/util/bkd/BKDRadixSelector.java
 ##
 @@ -0,0 +1,433 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one or more
+ * contributor license agreements.  See the NOTICE file distributed with
+ * this work for additional information regarding copyright ownership.
+ * The ASF licenses this file to You under the Apache License, Version 2.0
+ * (the "License"); you may not use this file except in compliance with
+ * the License.  You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.lucene.util.bkd;
+
+import java.io.IOException;
+import java.util.Arrays;
+
+import org.apache.lucene.store.Directory;
+import org.apache.lucene.util.BytesRef;
+import org.apache.lucene.util.FutureArrays;
+import org.apache.lucene.util.IntroSelector;
+
+/**
+ *
+ * Offline Radix selector for BKD tree.
+ *
+ *  @lucene.internal
+ * */
+public final class BKDRadixSelector {
+  //size of the histogram
+  private static final int HISTOGRAM_SIZE = 256;
+  // we store one histogram per recursion level
+  private final long[][] histogram;
+  //bytes we are sorting
+  private final int bytesPerDim;
+  // number of bytes to be sorted: bytesPerDim + Integer.BYTES
+  private final int bytesSorted;
+  //data dimensions size
+  private final int packedBytesLength;
+  //flag to when we are moving to sort on heap
+  private final int maxPointsSortedOffHeap;
+  //reusable buffer
+  private final byte[] offlineBuffer;
+  //holder for partition points
+  private final int[] partitionBucket;
+  //holder for partition bytes
+  private final byte[] partitionBytes;
+  //re-usable on-heap selector
+  private final HeapSelector heapSelector;
+  // scratch object to move bytes around
+  private final BytesRef bytesRef1 = new BytesRef();
+  // scratch object to move bytes around
+  private final BytesRef bytesRef2 = new BytesRef();
+  //Directory to create new Offline writer
+  private final Directory tempDir;
+  // prefix for temp files
+  private final String tempFileNamePrefix;
+
+
+
+  /**
+   * Sole constructor.
+   */
+  public BKDRadixSelector(int numDim, int bytesPerDim, int 
maxPointsSortedOffHeap, Directory tempDir, String tempFileNamePrefix) {
+this.bytesPerDim = bytesPerDim;
+this.packedBytesLength = numDim * bytesPerDim;
+this.bytesSorted = bytesPerDim + Integer.BYTES;
+this.maxPointsSortedOffHeap = maxPointsSortedOffHeap;
+this.offlineBuffer = new byte[maxPointsSortedOffHeap * (packedBytesLength 
+ Integer.BYTES)];
+this.partitionBucket = new int[bytesSorted];
+this.partitionBytes =  new byte[bytesSorted];
+this.histogram = new long[bytesSorted][HISTOGRAM_SIZE];
+this.bytesRef1.length = numDim * bytesPerDim;
+this.heapSelector = new HeapSelector(numDim, bytesPerDim);
+this.tempDir = tempDir;
+this.tempFileNamePrefix = tempFileNamePrefix;
+  }
+
+  /**
+   * Method to partition the input data. It returns the value of the dimension 
where
+   * the split happens.
+   */
+  public byte[] select(PointWriter points, PointWriter left, PointWriter 
right, long from, long to, long partitionPoint, int dim) throws IOException {
+checkArgs(from, to, partitionPoint);
+
+//If we are on heap then we just select on heap
+if (points instanceof HeapPointWriter) {
+  return heapSelect((HeapPointWriter) points, left, right, dim, 
Math.toIntExact(from), Math.toIntExact(to),  Math.toIntExact(partitionPoint), 
0);
+}
+
+//reset histogram
+for (int i = 0; i < bytesSorted; i++) {
+  Arrays.fill(histogram[i], 0);
+}
+OfflinePointWriter offlinePointWriter = (OfflinePointWriter) points;
+
+//find common prefix, it does already set histogram values if needed
+int commonPrefix = findCommonPrefix(offlinePointWriter, from, to, dim);
+
+//if all equals we just partition the data
+if (commonPrefix ==  bytesSorted) {
+  return partition(offlinePointWriter, left, right, from, to, 
partitionPoint, dim, null, commonPrefix - 1, partitionPoint);
+}
+//let's rock'n'roll
+return buildHistogramAndPartition(offlinePointWriter, null, left, right, 
from, to, partitionPoint, 0, commonPrefix, dim,0, 0);
+  }
+
+  void checkArgs(long from, long to, long middle) {
+if (middle < from) {
+  throw new IllegalArgumentException("middle must be >= from");
+}
+if (middle >= to) {
+  throw new I

[GitHub] iverase commented on a change in pull request #556: LUCENE-8673: Use radix partitioning when merging dimensional points

2019-02-04 Thread GitBox
iverase commented on a change in pull request #556: LUCENE-8673: Use radix 
partitioning when merging dimensional points
URL: https://github.com/apache/lucene-solr/pull/556#discussion_r253400460
 
 

 ##
 File path: 
lucene/core/src/java/org/apache/lucene/util/bkd/OfflinePointReader.java
 ##
 @@ -74,55 +69,68 @@ public OfflinePointReader(Directory tempDir, String 
tempFileName, int packedByte
   // at another level of the BKDWriter recursion
   in = tempDir.openInput(tempFileName, IOContext.READONCE);
 }
+
 name = tempFileName;
 
 long seekFP = start * bytesPerDoc;
 in.seek(seekFP);
 countLeft = length;
-packedValue = new byte[packedBytesLength];
-this.longOrds = longOrds;
+if (reusableBuffer != null) {
 
 Review comment:
   I am actually thinking if we should make those constructors from the readers 
protected. They should be always be constructed from the writers.


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[GitHub] iverase commented on a change in pull request #556: LUCENE-8673: Use radix partitioning when merging dimensional points

2019-02-04 Thread GitBox
iverase commented on a change in pull request #556: LUCENE-8673: Use radix 
partitioning when merging dimensional points
URL: https://github.com/apache/lucene-solr/pull/556#discussion_r253399133
 
 

 ##
 File path: lucene/core/src/java/org/apache/lucene/util/bkd/PointWriter.java
 ##
 @@ -19,24 +19,30 @@
 
 import java.io.Closeable;
 import java.io.IOException;
-import java.util.List;
+
+import org.apache.lucene.util.BytesRef;
 
 /** Appends many points, and then at the end provides a {@link PointReader} to 
iterate
  *  those points.  This abstracts away whether we write to disk, or use simple 
arrays
  *  in heap.
  *
- *  @lucene.internal */
-public interface PointWriter extends Closeable {
-  /** Add a new point */
-  void append(byte[] packedValue, long ord, int docID) throws IOException;
+ *  @lucene.internal
+ *  */
+public interface PointWriter extends Closeable {
+  /** Add a new point from byte array*/
+  void append(byte[] packedValue, int docID) throws IOException;
 
 Review comment:
   This method is used when we spill offline the incoming points on the BKD 
writer. We can wrap there the incoming byte[] into a BytesRef


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