[GitHub] incubator-omid pull request #16: [OMID-78] Identify transaction snapshot at ...

2017-11-14 Thread ohadshacham
Github user ohadshacham commented on a diff in the pull request:

https://github.com/apache/incubator-omid/pull/16#discussion_r150795077
  
--- Diff: 
hbase-coprocessor/src/main/java/org/apache/hadoop/hbase/regionserver/RegionAccessWrapper.java
 ---
@@ -0,0 +1,58 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hadoop.hbase.regionserver;
+
+import java.io.IOException;
+import java.util.List;
+
+import org.apache.hadoop.hbase.client.Get;
+import org.apache.hadoop.hbase.client.HTableInterface;
+import org.apache.hadoop.hbase.client.Put;
+import org.apache.hadoop.hbase.client.Result;
+import org.apache.omid.transaction.TableAccessWrapper;
+
+public class RegionAccessWrapper implements TableAccessWrapper {
--- End diff --

done


---


[GitHub] incubator-omid pull request #16: [OMID-78] Identify transaction snapshot at ...

2017-11-14 Thread ohadshacham
Github user ohadshacham commented on a diff in the pull request:

https://github.com/apache/incubator-omid/pull/16#discussion_r150794291
  
--- Diff: 
hbase-coprocessor/src/main/java/org/apache/hadoop/hbase/regionserver/OmidRegionScanner.java
 ---
@@ -0,0 +1,128 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hadoop.hbase.regionserver;
+
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+
+import org.apache.hadoop.hbase.Cell;
+import org.apache.hadoop.hbase.HRegionInfo;
+import org.apache.hadoop.hbase.regionserver.RegionScanner;
+import org.apache.hadoop.hbase.regionserver.ScannerContext;
+import org.apache.omid.transaction.HBaseTransaction;
+import org.apache.omid.transaction.SnapshotFilter;
+
+public class OmidRegionScanner implements RegionScanner {
+
+RegionScanner scanner;
+SnapshotFilter snapshotFilter;
+HBaseTransaction transaction;
+int maxVersions;
+Map familyDeletionCache;
+
+public OmidRegionScanner(SnapshotFilter snapshotFilter,
+  RegionScanner s,
+  HBaseTransaction transaction,
+  int maxVersions) {
+this.snapshotFilter = snapshotFilter;
+this.scanner = s;
+this.transaction = transaction;
+this.maxVersions = maxVersions;
+this.familyDeletionCache = new HashMap();
+}
+
+@Override
+public boolean next(List results) throws IOException {
+   return next(results, Integer.MAX_VALUE);
+}
+
+public boolean next(List result, int limit) throws IOException {
--- End diff --

The function is defined in RegionScanner interface, we are just override it.


---


[GitHub] incubator-omid pull request #16: [OMID-78] Identify transaction snapshot at ...

2017-11-14 Thread ohadshacham
Github user ohadshacham commented on a diff in the pull request:

https://github.com/apache/incubator-omid/pull/16#discussion_r150794375
  
--- Diff: 
hbase-client/src/main/java/org/apache/omid/transaction/HTableAccessWrapper.java 
---
@@ -0,0 +1,53 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.omid.transaction;
+
+import java.io.IOException;
+import java.util.List;
+
+import org.apache.hadoop.hbase.client.Get;
+import org.apache.hadoop.hbase.client.HTableInterface;
+import org.apache.hadoop.hbase.client.Put;
+import org.apache.hadoop.hbase.client.Result;
+
+public class HTableAccessWrapper implements TableAccessWrapper {
--- End diff --

RegionAccessWrapper


---


[GitHub] incubator-omid pull request #16: [OMID-78] Identify transaction snapshot at ...

2017-11-14 Thread ohadshacham
Github user ohadshacham commented on a diff in the pull request:

https://github.com/apache/incubator-omid/pull/16#discussion_r150794314
  
--- Diff: 
hbase-coprocessor/src/main/java/org/apache/hadoop/hbase/regionserver/OmidRegionScanner.java
 ---
@@ -0,0 +1,128 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hadoop.hbase.regionserver;
+
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+
+import org.apache.hadoop.hbase.Cell;
+import org.apache.hadoop.hbase.HRegionInfo;
+import org.apache.hadoop.hbase.regionserver.RegionScanner;
+import org.apache.hadoop.hbase.regionserver.ScannerContext;
+import org.apache.omid.transaction.HBaseTransaction;
+import org.apache.omid.transaction.SnapshotFilter;
+
+public class OmidRegionScanner implements RegionScanner {
+
+RegionScanner scanner;
+SnapshotFilter snapshotFilter;
+HBaseTransaction transaction;
+int maxVersions;
+Map familyDeletionCache;
+
+public OmidRegionScanner(SnapshotFilter snapshotFilter,
+  RegionScanner s,
+  HBaseTransaction transaction,
+  int maxVersions) {
+this.snapshotFilter = snapshotFilter;
+this.scanner = s;
+this.transaction = transaction;
+this.maxVersions = maxVersions;
+this.familyDeletionCache = new HashMap();
+}
+
+@Override
+public boolean next(List results) throws IOException {
+   return next(results, Integer.MAX_VALUE);
+}
+
+public boolean next(List result, int limit) throws IOException {
+return nextRaw(result, limit);
+}
+
+@Override
+public void close() throws IOException {
+scanner.close();
+}
+
+@Override
+public HRegionInfo getRegionInfo() {
+return scanner.getRegionInfo();
+}
+
+@Override
+public boolean isFilterDone() throws IOException {
+return scanner.isFilterDone();
+}
+
+@Override
+public boolean reseek(byte[] row) throws IOException {
+throw new RuntimeException("Not implemented");
+}
+
+@Override
+public long getMaxResultSize() {
+return scanner.getMaxResultSize();
+}
+
+@Override
+public long getMvccReadPoint() {
+return scanner.getMvccReadPoint();
+}
+
+@Override
+public boolean nextRaw(List result) throws IOException {
--- End diff --

The function is defined in RegionScanner interface, we are just override it.


---


[jira] [Commented] (OMID-78) Identify transaction snapshot at the server

2017-11-14 Thread ASF GitHub Bot (JIRA)

[ 
https://issues.apache.org/jira/browse/OMID-78?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16251218#comment-16251218
 ] 

ASF GitHub Bot commented on OMID-78:


Github user ohadshacham commented on a diff in the pull request:

https://github.com/apache/incubator-omid/pull/16#discussion_r150795933
  
--- Diff: 
hbase-client/src/main/java/org/apache/omid/transaction/HTableAccessWrapper.java 
---
@@ -0,0 +1,53 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.omid.transaction;
+
+import java.io.IOException;
+import java.util.List;
+
+import org.apache.hadoop.hbase.client.Get;
+import org.apache.hadoop.hbase.client.HTableInterface;
+import org.apache.hadoop.hbase.client.Put;
+import org.apache.hadoop.hbase.client.Result;
+
+public class HTableAccessWrapper implements TableAccessWrapper {
+
+private final HTableInterface healerTable;
--- End diff --

Done


> Identify transaction snapshot at the server
> ---
>
> Key: OMID-78
> URL: https://issues.apache.org/jira/browse/OMID-78
> Project: Apache Omid
>  Issue Type: New Feature
>Reporter: Ohad Shacham
>Assignee: Ohad Shacham
>
> To identify a transaction's snapshot in scans and gets, Omid reads and filter 
> cells at the client side. This filtering requires checking the shadow cells 
> and accessing the commit table if needed.
> Doing the filtering at the server side should be more efficient since less 
> data is being transferred to the client and also, in some cases, RPCs are 
> being saved.
> This feature requires implementing a coprocessor that will do the filtering 
> at the server side and returns only the relevant snapshot to the client side.
> This feature is also needed to support the integration of Omid with Phoenix. 
> This is required since Phoenix has coprocessors that change and condence the 
> data returned to the client and therefore, filtering at the client side in 
> this case is impossible.



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[jira] [Commented] (OMID-78) Identify transaction snapshot at the server

2017-11-14 Thread ASF GitHub Bot (JIRA)

[ 
https://issues.apache.org/jira/browse/OMID-78?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16251209#comment-16251209
 ] 

ASF GitHub Bot commented on OMID-78:


Github user ohadshacham commented on a diff in the pull request:

https://github.com/apache/incubator-omid/pull/16#discussion_r150795077
  
--- Diff: 
hbase-coprocessor/src/main/java/org/apache/hadoop/hbase/regionserver/RegionAccessWrapper.java
 ---
@@ -0,0 +1,58 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hadoop.hbase.regionserver;
+
+import java.io.IOException;
+import java.util.List;
+
+import org.apache.hadoop.hbase.client.Get;
+import org.apache.hadoop.hbase.client.HTableInterface;
+import org.apache.hadoop.hbase.client.Put;
+import org.apache.hadoop.hbase.client.Result;
+import org.apache.omid.transaction.TableAccessWrapper;
+
+public class RegionAccessWrapper implements TableAccessWrapper {
--- End diff --

done


> Identify transaction snapshot at the server
> ---
>
> Key: OMID-78
> URL: https://issues.apache.org/jira/browse/OMID-78
> Project: Apache Omid
>  Issue Type: New Feature
>Reporter: Ohad Shacham
>Assignee: Ohad Shacham
>
> To identify a transaction's snapshot in scans and gets, Omid reads and filter 
> cells at the client side. This filtering requires checking the shadow cells 
> and accessing the commit table if needed.
> Doing the filtering at the server side should be more efficient since less 
> data is being transferred to the client and also, in some cases, RPCs are 
> being saved.
> This feature requires implementing a coprocessor that will do the filtering 
> at the server side and returns only the relevant snapshot to the client side.
> This feature is also needed to support the integration of Omid with Phoenix. 
> This is required since Phoenix has coprocessors that change and condence the 
> data returned to the client and therefore, filtering at the client side in 
> this case is impossible.



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[jira] [Commented] (OMID-78) Identify transaction snapshot at the server

2017-11-14 Thread ASF GitHub Bot (JIRA)

[ 
https://issues.apache.org/jira/browse/OMID-78?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16251207#comment-16251207
 ] 

ASF GitHub Bot commented on OMID-78:


Github user ohadshacham commented on a diff in the pull request:

https://github.com/apache/incubator-omid/pull/16#discussion_r150794375
  
--- Diff: 
hbase-client/src/main/java/org/apache/omid/transaction/HTableAccessWrapper.java 
---
@@ -0,0 +1,53 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.omid.transaction;
+
+import java.io.IOException;
+import java.util.List;
+
+import org.apache.hadoop.hbase.client.Get;
+import org.apache.hadoop.hbase.client.HTableInterface;
+import org.apache.hadoop.hbase.client.Put;
+import org.apache.hadoop.hbase.client.Result;
+
+public class HTableAccessWrapper implements TableAccessWrapper {
--- End diff --

RegionAccessWrapper


> Identify transaction snapshot at the server
> ---
>
> Key: OMID-78
> URL: https://issues.apache.org/jira/browse/OMID-78
> Project: Apache Omid
>  Issue Type: New Feature
>Reporter: Ohad Shacham
>Assignee: Ohad Shacham
>
> To identify a transaction's snapshot in scans and gets, Omid reads and filter 
> cells at the client side. This filtering requires checking the shadow cells 
> and accessing the commit table if needed.
> Doing the filtering at the server side should be more efficient since less 
> data is being transferred to the client and also, in some cases, RPCs are 
> being saved.
> This feature requires implementing a coprocessor that will do the filtering 
> at the server side and returns only the relevant snapshot to the client side.
> This feature is also needed to support the integration of Omid with Phoenix. 
> This is required since Phoenix has coprocessors that change and condence the 
> data returned to the client and therefore, filtering at the client side in 
> this case is impossible.



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[jira] [Commented] (OMID-78) Identify transaction snapshot at the server

2017-11-14 Thread ASF GitHub Bot (JIRA)

[ 
https://issues.apache.org/jira/browse/OMID-78?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16251205#comment-16251205
 ] 

ASF GitHub Bot commented on OMID-78:


Github user ohadshacham commented on a diff in the pull request:

https://github.com/apache/incubator-omid/pull/16#discussion_r150794291
  
--- Diff: 
hbase-coprocessor/src/main/java/org/apache/hadoop/hbase/regionserver/OmidRegionScanner.java
 ---
@@ -0,0 +1,128 @@
+/*
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.apache.hadoop.hbase.regionserver;
+
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+
+import org.apache.hadoop.hbase.Cell;
+import org.apache.hadoop.hbase.HRegionInfo;
+import org.apache.hadoop.hbase.regionserver.RegionScanner;
+import org.apache.hadoop.hbase.regionserver.ScannerContext;
+import org.apache.omid.transaction.HBaseTransaction;
+import org.apache.omid.transaction.SnapshotFilter;
+
+public class OmidRegionScanner implements RegionScanner {
+
+RegionScanner scanner;
+SnapshotFilter snapshotFilter;
+HBaseTransaction transaction;
+int maxVersions;
+Map familyDeletionCache;
+
+public OmidRegionScanner(SnapshotFilter snapshotFilter,
+  RegionScanner s,
+  HBaseTransaction transaction,
+  int maxVersions) {
+this.snapshotFilter = snapshotFilter;
+this.scanner = s;
+this.transaction = transaction;
+this.maxVersions = maxVersions;
+this.familyDeletionCache = new HashMap();
+}
+
+@Override
+public boolean next(List results) throws IOException {
+   return next(results, Integer.MAX_VALUE);
+}
+
+public boolean next(List result, int limit) throws IOException {
--- End diff --

The function is defined in RegionScanner interface, we are just override it.


> Identify transaction snapshot at the server
> ---
>
> Key: OMID-78
> URL: https://issues.apache.org/jira/browse/OMID-78
> Project: Apache Omid
>  Issue Type: New Feature
>Reporter: Ohad Shacham
>Assignee: Ohad Shacham
>
> To identify a transaction's snapshot in scans and gets, Omid reads and filter 
> cells at the client side. This filtering requires checking the shadow cells 
> and accessing the commit table if needed.
> Doing the filtering at the server side should be more efficient since less 
> data is being transferred to the client and also, in some cases, RPCs are 
> being saved.
> This feature requires implementing a coprocessor that will do the filtering 
> at the server side and returns only the relevant snapshot to the client side.
> This feature is also needed to support the integration of Omid with Phoenix. 
> This is required since Phoenix has coprocessors that change and condence the 
> data returned to the client and therefore, filtering at the client side in 
> this case is impossible.



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