date:20160610

Re: [dspace-tech] Re: Is this the correct command to update item metadata through REST API?

2016-06-10 Thread Tao Zhao

Now I found even I restart tomcat the old metadata was still there. : -(

So how can I restart/reload to adopt the new updated matadata for the items?

Thanks,

Tao


On Thursday, June 9, 2016 at 1:56:32 PM UTC-5, helix84 wrote:
>
> Seems like you're running into this issue because you're running DSpace 
> 5.3:
>
> https://jira.duraspace.org/browse/DS-2692
>
> It is described here in comments:
>
> https://github.com/DSpace/DSpace/pull/1007
>
> The solution would be to upgrade to 5.4 (or better, to 5.5 which includes 
> a critical security fix for XMLUI).
>
>
> Regards,
> ~~helix84
>
> Compulsory reading: DSpace Mailing List Etiquette
> https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette
>
>
>
> On Thu, Jun 9, 2016 at 6:40 PM, Tao Zhao  > wrote:
>
>> Just found out what happened:
>>
>> The actual metadata has been changed after the command was executed. I 
>> can see the updated metadata if I open the web page with the browser with 
>> the handle ID.
>>
>> However, if I execute the command curl 
>> https://abcd.org/rest/items/39850/metadata I still get the old metadata 
>> information.
>>
>> Anyone can help me?
>>
>> Thanks.
>>
>>
>> On Thursday, June 9, 2016 at 10:15:44 AM UTC-5, Tao Zhao wrote:
>>>
>>> curl -X PUT -H "Content-Type: application/json" -H "Accept: 
>>> application/json" -H "rest-dspace-token: 
>>> b2fcc846-64fa-42b4-a21a-040caac986db" --data '[{"key":"dwc.npdg.homestate", 
>>> "value":"OK", "language":""}]' 
>>> https://abcd.org/rest/items/39850/metadata
>>>
>>> I tried this but it did not give me any response information and either 
>>> change the metadata.
>>>
>>> Thanks a lot,
>>>
>>> Tao
>>>
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>
>

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[dspace-tech] Downloading a bitstream using XMLUI

2016-06-10 Thread Evgeni Dimitrov

In the DSpace-Manual it is documented how to get a bitstream using REST:

//dspace.xx.xx:8080/rest/bitstreams/290183/retrieve

But the bitstream can be downloaded using XMLUI:

//dspace.xx.xx:8080/xmlui/bitstream/nls/22290/10001/*

I believe that this is also documented - the rule how to create the above
link, based on xmlui.
Could somebody point to the place where this is documented.

Best regards

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Re: [dspace-tech] Importing BibTeX files using BTE

2016-06-10 Thread Oliver Goldschmidt

Hi Claudia,

thank you very much for your reply! 
I know the config file for BTE, but I do not see how I can split the BibTeX 
field for author into several dc.contributor.author fields in the DSpace 
record. As far as I know I can only map a key from the bibtex file to a key 
in the config file, which maps to a dc field (but it seems to me that its 
always only one field). For example in the bibTeXDataLoader-section in 
bte.xml:  maps to the outputMap, 
where I find this element: . My interpreation is, that the value of the 
author field is set into the field dc.contributor.author - but I can't see 
if I can process the BibTeX field before putting it into the DSpace field 
(and I guess that would be necessary to split off the author string to get 
it into multiple DC attributes).

About the latex encoded ü: if I understand you correctly, I will have no 
choice and need to convert such characters before I import the record into 
DSpace. I guess that's not very comfortable (as that means I need to check 
every BibTeX record before importing), but okay...

Thanks
Oliver

Am Freitag, 10. Juni 2016 14:55:05 UTC+2 schrieb Claudia Jürgen:
>
> Hi Oliver,
>
> the config file for BTE is:
>
> https://github.com/DSpace/DSpace/blob/dspace-5.5/dspace/config/spring/api/bte.xml#L256
> which does a simple mapping of fields and defines the data loader.
>
> As for the encoding this is a bit tricky as it depends on the packages and 
> inputenc used in the LaTeX itself.
> The indirect way to input e.g. ü is
> {\"u} or \"u
> using \usepackage[german]{babel} ü might be written "u
> and with 
>
> \usepackage[ansinew]{inputenc}(windows) you can enter them directly afaik.
>
> Hope this helps
>
> Claudia Jürgen
>
>
>
>
> Am 10.06.2016 um 12:23 schrieb Oliver Goldschmidt:
>
> Hello DSpacers,
>
> currently I'm experimenting a little bit with importing BibTeX files using 
> BTE. If a BibTeX record has multiple authors, I see something like this in 
> the author field in the BibTeX file:
> author = {Me Myself and Oliver Goldschmidt and Fritz M{\"u}ller}
>
> As far as I know this is absolutely conform to the BibTeX standard. But the 
> BTE importer messes the imported record up and writes exactly that string 
> into one dc.contributor.author field. It also does not convert the latex 
> encoding properly. I would expect the importer to create a record with 
> three dc.contributor.author fields. Before I start digging in the code 
> trying to improve this bad behavior: can this get corrected by 
> configuration?
>
> Best 
> Oliver
>
>
>
> -- 
> Claudia Juergen
> Eldorado
>
> Technische Universität Dortmund
> Universitätsbibliothek
> Vogelpothsweg 76
> 44227 Dortmund
>
> Tel.: +49 231-755 40 43
> Fax: +49 231-755 40 32claudia...@tu-dortmund.de 
> www.ub.tu-dortmund.de
>
>
>
>
> *Wichtiger Hinweis: Die Information in dieser E-Mail ist vertraulich. Sie 
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Re: [dspace-tech] Issue with tomcat 8.0.32

2016-06-10 Thread Tim Donohue


Thanks for the note, Ondrej!

It looks like others had already mentioned a very similar issue with 
Tomcat 8.0.32 in this ticket:


https://jira.duraspace.org/browse/DS-3142

I've added your solution as a comment to that ticket, to help others 
find it.


Tim


On 6/10/2016 5:25 AM, Ondřej Košarko wrote:

Dear all,
In case you are running tomcat 8.0.32 and are experiencing strange 
issues such as the exception below


org.apache.cocoon.ProcessingException: Sitemap: error calling function 
'doSubmission'

at  - resource://aspects/Submission/sitemap.xmap
...
Caused by: java.lang.StringIndexOutOfBoundsException: String index out 
of range: 3

at java.lang.String.charAt(String.java:658)

try updating your tomcat (8.0.35 seems fine). The culprit seem to be 
the following tomcat bug 
http://bz.apache.org/bugzilla/show_bug.cgi?id=58999 . From my 
understanding this should affect xmlui only.


Best,
Ondrej
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Re: [dspace-tech] erro de metadados ao inserir documentos

2016-06-10 Thread Luiz dos Santos

Hi Rafael,

   As Claudia mentioned you can see details about the translations in
https://wiki.duraspace.org/display/DSDOC5x/Localization+L10n . In case of
jspui, you can find the messages here
[dspace-source]/dspace/modules/jspui/src/main/resources/Messages.properties
, I don't know about the IBICT customization version, even more, each
language should have it own file, the translated files should be in
[dspace-source]/dspace/modules/jspui/src/main/resources/,  the file in
portuguese should be  Messages_pt_BR.properties, again, I'm not sure about
IBICT version, once you find the file Portuguese, it should have something
like, for author:

metadata.dc.contributor.*   = Autor
metadata.dc.contributor.author  = Autor


Once you change the file you need build Dspace again.


Best regards
Luiz


On Fri, Jun 10, 2016 at 9:46 AM, Claudia Jürgen <
claudia.juer...@tu-dortmund.de> wrote:

> Hello Rafael,
>
> you are missing the translation in the message catalogue. How to
> customize the message catalogues for either JSPUI or XMLUI see
> https://wiki.duraspace.org/display/DSDOC5x/Localization+L10n
>
> Hope this helps
>
> Claudia Jürgen
>
>
> Am 10.06.2016 um 15:24 schrieb Rafael Arcari:
>
>> Bom dia.
>>
>> Estou tendo o seguinte problema ao inserir documentos no dspace:
>>
>> Depois de inserir o documento, um artigo ou dissertação, os campos como
>> *tipo,
>> cnpq, resumo, autor,* aparecem com o nome do metado dele:
>>
>> metadata.dc.type:
>> metadata.dc.creator:
>>
>> metadata.dc.contributor.advisor1:
>>
>> Alguem poderia me explicar o motivo disso ocorrer?
>>
>>
> --
> Claudia Juergen
> Eldorado
>
> Technische Universität Dortmund
> Universitätsbibliothek
> Vogelpothsweg 76
> 44227 Dortmund
>
> Tel.: +49 231-755 40 43
> Fax: +49 231-755 40 32
> claudia.juer...@tu-dortmund.de
> www.ub.tu-dortmund.de
>
> Wichtiger Hinweis: Die Information in dieser E-Mail ist vertraulich. Sie
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Re: [dspace-tech] erro de metadados ao inserir documentos

2016-06-10 Thread Claudia Jürgen


Hello Rafael,

you are missing the translation in the message catalogue. How to
customize the message catalogues for either JSPUI or XMLUI see
https://wiki.duraspace.org/display/DSDOC5x/Localization+L10n

Hope this helps

Claudia Jürgen


Am 10.06.2016 um 15:24 schrieb Rafael Arcari:

Bom dia.

Estou tendo o seguinte problema ao inserir documentos no dspace:

Depois de inserir o documento, um artigo ou dissertação, os campos como *tipo,
cnpq, resumo, autor,* aparecem com o nome do metado dele:

metadata.dc.type:
metadata.dc.creator:

metadata.dc.contributor.advisor1:

Alguem poderia me explicar o motivo disso ocorrer?



--
Claudia Juergen
Eldorado

Technische Universität Dortmund
Universitätsbibliothek
Vogelpothsweg 76
44227 Dortmund

Tel.: +49 231-755 40 43
Fax: +49 231-755 40 32
claudia.juer...@tu-dortmund.de
www.ub.tu-dortmund.de

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ausschließlich für den Adressaten bestimmt. Sollten Sie nicht der für diese 
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Re: [dspace-tech] How can I migrate data to DSpace

2016-06-10 Thread Luiz dos Santos

Hi Bobby,

 You can start here:
https://wiki.duraspace.org/display/DSDOC5x/Batch+Metadata+Editing

Best
Luiz

On Fri, Jun 10, 2016 at 2:26 AM, Bobbi Prathama 
wrote:

> Hai, i have a biblography file export from slims wit format csv. How do i
> import this file to DSpace?
>
> Please Answer, Thanks
>
>
>
>
> Best Regard,
>
>
>
> Bobby Pratama
>
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Re: [dspace-tech] erro de metadados ao inserir documentos

2016-06-10 Thread Luiz dos Santos

Oi,

Isso indica que ta faltando o traducao dos nomes dos campos, Vc ta
usando JSPUI ou XMLUI? Que versao? Dependendo da versao e da interface que
vc ta usando o lugar onde colocar a traducao varia.


Ps: Se vc postar suas duvidas em ingles vai aumentar no numero de pessoas
que podem responder.

[]'s
Luiz

On Fri, Jun 10, 2016 at 9:24 AM, Rafael Arcari  wrote:

> Bom dia.
>
> Estou tendo o seguinte problema ao inserir documentos no dspace:
>
> Depois de inserir o documento, um artigo ou dissertação, os campos como *tipo,
> cnpq, resumo, autor,* aparecem com o nome do metado dele:
>
> metadata.dc.type:
> metadata.dc.creator:
>
> metadata.dc.contributor.advisor1:
>
> Alguem poderia me explicar o motivo disso ocorrer?
>
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[dspace-tech] erro de metadados ao inserir documentos

2016-06-10 Thread Rafael Arcari

Bom dia.

Estou tendo o seguinte problema ao inserir documentos no dspace:

Depois de inserir o documento, um artigo ou dissertação, os campos como *tipo, 
cnpq, resumo, autor,* aparecem com o nome do metado dele:

metadata.dc.type: 
metadata.dc.creator: 

metadata.dc.contributor.advisor1: 

Alguem poderia me explicar o motivo disso ocorrer?

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Re: [dspace-tech] Importing BibTeX files using BTE

2016-06-10 Thread Claudia Jürgen


Hi Oliver,

the config file for BTE is:
https://github.com/DSpace/DSpace/blob/dspace-5.5/dspace/config/spring/api/bte.xml#L256
which does a simple mapping of fields and defines the data loader.

As for the encoding this is a bit tricky as it depends on the packages and 
inputenc used in the LaTeX itself.
The indirect way to input e.g. ü is
{\"u} or \"u
using \usepackage[german]{babel} ü might be written "u
and with

\usepackage[ansinew]{inputenc}(windows) you can enter them directly afaik.

Hope this helps

Claudia Jürgen




Am 10.06.2016 um 12:23 schrieb Oliver Goldschmidt:

Hello DSpacers,

currently I'm experimenting a little bit with importing BibTeX files using
BTE. If a BibTeX record has multiple authors, I see something like this in
the author field in the BibTeX file:
author = {Me Myself and Oliver Goldschmidt and Fritz M{\"u}ller}

As far as I know this is absolutely conform to the BibTeX standard. But the
BTE importer messes the imported record up and writes exactly that string
into one dc.contributor.author field. It also does not convert the latex
encoding properly. I would expect the importer to create a record with
three dc.contributor.author fields. Before I start digging in the code
trying to improve this bad behavior: can this get corrected by
configuration?

Best
Oliver




--
Claudia Juergen
Eldorado

Technische Universität Dortmund
Universitätsbibliothek
Vogelpothsweg 76
44227 Dortmund

Tel.: +49 231-755 40 43
Fax: +49 231-755 40 32
claudia.juer...@tu-dortmund.de
www.ub.tu-dortmund.de

Wichtiger Hinweis: Die Information in dieser E-Mail ist vertraulich. Sie ist 
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Re: [dspace-tech] Recommended Testing Strategy

2016-06-10 Thread Luiz dos Santos

Hi Mark,


 Ok, to test other modules I have to extend AbstractUnitTest, in the
documentation (https://wiki.duraspace.org/display/DSPACE/DSpace+Testing),
they talk about dspace-test module, but this module is not available in
Dspace 6. What should be the best approach to use the test classes in
dspace-api as a dependency in other module? Copy, maven dependency?


Best
Luiz

On Wed, Jun 8, 2016 at 11:10 AM, Luiz dos Santos  wrote:

> Hi Mark,
>
> It seems nice, I would like at least start to write some test to
> REST-API, so I should use the approach in dspace-api, right?
>
> Best
> Luiz
>
> On Wed, Jun 8, 2016 at 9:31 AM, Mark Wood  wrote:
>
>> On Tue, Jun 07, 2016 at 12:09:41PM -0500, Tim Donohue wrote:
>> > As far as I'm aware, that's just how a Maven test runs. It automatically
>> > will try to run tests in all modules, but it only will execute ones that
>> > it finds.  So, most modules will report that no tests were found.  I'm
>> > unaware of any way to change that behavior in Maven (if you know of one,
>> > let us know).
>>
>> That's right: phases 'test' and 'integration-test' (and several other
>> test-related phases) are part of the standard Maven lifecycle and will
>> be run unless suppressed somehow.  I think that we could selectively
>> disable these phases for projects that currently have no tests, but I
>> would rather that we started writing good tests for those projects.
>>
>> Some good work was started in dspace-api, which can be extended to
>> other projects without a lot of effort.  It just hasn't been done.
>> What we have now is frameworks with some quite useful tests included,
>> and a collection of newer tests that grows as individual developers
>> add to it for their own use.  I'm less familiar with the test setup in
>> dspace-services, which was developed separately.
>>
>> We could use some more mocking to make some of our unit tests more
>> lightweight (and a lot faster).
>>
>> > Also, be aware that we have Unit / Integration Tests disabled by default
>> > in our Maven POM settings.  So, to actually run tests, you need to apply
>> > a flag to enable them:
>> >
>> >   * "-Dmaven.test.skip=false" will enable Unit Tests to run (via Maven
>> > Surefire Plugin)
>> >   * "-DskipITs=false" will enable Integration Tests to run (via Maven
>> > Failsafe Plugin)
>>
>> Just to make things *really* confusing, I have the following in my
>> ~/.m2/settings.xml:
>>
>>  
>>
>>   defaults
>>   
>>  false
>>  false
>>   
>>
>>  
>>
>>  
>> defaults
>>  
>>
>> --
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>>
>
>

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[dspace-tech] Issue with tomcat 8.0.32

2016-06-10 Thread Ondřej Košarko

Dear all,
In case you are running tomcat 8.0.32 and are experiencing strange issues
such as the exception below

org.apache.cocoon.ProcessingException: Sitemap: error calling function
'doSubmission'
at  - resource://aspects/Submission/sitemap.xmap
...
Caused by: java.lang.StringIndexOutOfBoundsException: String index out of
range: 3
at java.lang.String.charAt(String.java:658)

try updating your tomcat (8.0.35 seems fine). The culprit seem to be the
following tomcat bug http://bz.apache.org/bugzilla/show_bug.cgi?id=58999 .
>From my understanding this should affect xmlui only.

Best,
Ondrej

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[dspace-tech] Importing BibTeX files using BTE

2016-06-10 Thread Oliver Goldschmidt

Hello DSpacers,

currently I'm experimenting a little bit with importing BibTeX files using 
BTE. If a BibTeX record has multiple authors, I see something like this in 
the author field in the BibTeX file:
author = {Me Myself and Oliver Goldschmidt and Fritz M{\"u}ller}

As far as I know this is absolutely conform to the BibTeX standard. But the 
BTE importer messes the imported record up and writes exactly that string 
into one dc.contributor.author field. It also does not convert the latex 
encoding properly. I would expect the importer to create a record with 
three dc.contributor.author fields. Before I start digging in the code 
trying to improve this bad behavior: can this get corrected by 
configuration?

Best 
Oliver

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Re: [dspace-tech] Re: OAuth Login in DSpace CRIS 5.5.0

2016-06-10 Thread dummies code fest

Dear team,

When I configure the ORCID settings with the public API it works, but it is
not working when I configure sandbox and production member settings
(changing the credentials). Could you know if there are other
configurations or the URLs of ORCID services have been changed?

Thank you very much in advance.

#PUBLIC API
#authentication-oauth.orcid-api-url = http://pub.orcid.org/v1.2
#authentication-oauth.application-token-url =
https://pub.orcid.org/oauth/token
#authentication-oauth.application-authorize-url =
https://orcid.org/oauth/authorize

#SANDBOX MEMBER API
#authentication-oauth.orcid-api-url = http://api.sandbox.orcid.org/v1.2
#authentication-oauth.application-token-url =
https://api.sandbox.orcid.org/oauth/token
#authentication-oauth.application-authorize-url =
https://sandbox.orcid.org/oauth/authorize

#PRODUCTION MEMBER API
authentication-oauth.orcid-api-url = http://api.orcid.org/v1.2
authentication-oauth.application-token-url =
https://api.orcid.org/oauth/token
authentication-oauth.application-authorize-url =
https://orcid.org/oauth/authorize

2016-06-08 12:45 GMT+02:00 dummies code fest :

> Dear all,
>
> I redirected tomcat to port #80, and I have installed the DSPACE-CRIS how:
> http://mydomain.com/jspui. Then I put a ROOT symlink in webapps to
> redirect to jspui folder, in order to not use /jspui in url.
> Then I am not sure if the redirection to connect with ORCID API would be:
>
> http://mydomain.com/jspui/oauth-login 
> or
> http://mydomain.com/oauth-login 
>
> I test the 2 option, but it is not working, error HTTP500. Any suggestion?
>
> Thank you very much in advance.
>
>
>
> 2016-05-31 16:04 GMT+02:00 Andrea Bollini :
>
>> Hi,
>>
>> 2) In the build.properties I have configured:
>> authentication-oauth.application-client-redirect =
>> ${dspace.baseUrl}/oauth-login
>> then It means that will be "http://mydomain:8080/oauth-login";
>>
>> Is it correct?
>>
>> No, it should be
>> authentication-oauth.application-client-redirect =
>> ${dspace.url}/oauth-login
>>
>> i.e. http://mydomain:8080/jspui/oauth-login
>> 
>> Andrea
>>
>>
>> My result is that the return from sandbox to CRIS it gets blank page with
>> the following adress " 
>> http://mydomain:8080/oauth-login?code=P3jix2";
>>
>> I don't know that I could check.
>>
>> Thank you very much. I am really apreciate.
>>
>>
>> 2016-05-27 18:23 GMT+02:00 Andrea Bollini :
>>
>>> It needs to match the dspace.url parameter
>>> If your repository home page is visible at "
>>> http://mydomain:8080/jspui/";
>>> the redirect URL should be "http://mydomain:8080/jspui/oauth-login";
>>>
>>> Using just http://mydomain:8080 
>>> as redirect URL should work as well but it is a bit more risky from the
>>> security point-of-view
>>> Andrea
>>>
>>>
>>> Il 27/05/2016 14:39, dummies code fest ha scritto:
>>>
>>> Dear Andrea,
>>>
>>> I provided this redirect URL " 
>>> http://mydomain:8080/oauth-login";. But I am not sure if this URL is
>>> correct or for example it would be "
>>> http://mydomain:8080/jspui/oauth-login";, or if is necessary configurate
>>> something more.
>>>
>>> Thank you very much.
>>>
>>> 2016-05-27 14:25 GMT+02:00 Andrea Bollini < 
>>> a.boll...@cineca.it>:
>>>
 Hi,
 when you have applied for the ORCID API KEY you have provided the
 allowed redirect URLs, see the last paragraph here

 http://support.orcid.org/knowledgebase/articles/116739-register-a-client-application

 The dspace.url need to be included in such list.
 Hope this help,
 Andrea

 Il 27/05/2016 12:25, 
 codefest4dumm...@gmail.com ha scritto:

 Dear team,

 I have problems with ORCID integration in DSPACE-CRIS, in the
 redirection to DSPACE-CRIS from ORCID is not working. Then, I'm not sure if
 I have configured the ORCID in the good way. Could you help me? Is
 there any information about to do it?

 Thank you very much.

 authentication-oauth.orcid-api-url = http://api.sandbox.orcid.org/v1.2
 authentication-oauth.application-token-url =
 https://api.sandbox.orcid.org/oauth/token
 authentication-oauth.application-authorize-url =
 
 https://sandbox.orcid.org/oauth/authorize

 # register for free on ORCID to use an institutional Public API
 # IMPORTANT!! Please fill authentication-oauth.application-client-name
 with name of client registered into orcid registries (need by the putcode
 flow retrieve)
 authentication-oauth.application-client-name = myname
 authentication-oauth.application-client-id = myid
 authentication-oauth.application-client-secret = mysecret
 authentication-oauth.application-client-redirect =
 ${dspace.baseUrl}/oauth

Re: [dspace-tech] Dspace 5 - is there a cross reference where NAME went? Collection name, bitstream name, etc?

2016-06-10 Thread helix84

https://wiki.duraspace.org/display/DSPACE/Metadata+for+all+DSpace+objects


Regards,
~~helix84

Compulsory reading: DSpace Mailing List Etiquette
https://wiki.duraspace.org/display/DSPACE/Mailing+List+Etiquette


On Fri, Jun 10, 2016 at 3:09 AM, Tom Avino  wrote:

> Since the Dspace upgrade from 3.3 to 5.5, I can no longer find some of the
> "name" fields.  I have some custom SQL that needs to reference these.
> Specifically BITSTREAM.NAME, COLLECTION.NAME, COMMUNITY.NAME.  Are there
> by chance any VIEWS created for these to simplify some of my SQL scritps?
>
> Thanks,
>
> Tom Avino
>
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Re: [dspace-tech] Re: Is this the correct command to update item metadata through REST API?

[dspace-tech] Downloading a bitstream using XMLUI

Re: [dspace-tech] Importing BibTeX files using BTE

Re: [dspace-tech] Issue with tomcat 8.0.32

Re: [dspace-tech] erro de metadados ao inserir documentos

Re: [dspace-tech] erro de metadados ao inserir documentos

Re: [dspace-tech] How can I migrate data to DSpace

Re: [dspace-tech] erro de metadados ao inserir documentos

[dspace-tech] erro de metadados ao inserir documentos

Re: [dspace-tech] Importing BibTeX files using BTE

Re: [dspace-tech] Recommended Testing Strategy

[dspace-tech] Issue with tomcat 8.0.32

[dspace-tech] Importing BibTeX files using BTE

Re: [dspace-tech] Re: OAuth Login in DSpace CRIS 5.5.0

Re: [dspace-tech] Dspace 5 - is there a cross reference where NAME went? Collection name, bitstream name, etc?

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