[DuMuX] Task 330: Handbook refers to user wiki which will be shut down

2016-09-22 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Christoph Grüninger (gruenich) 

Attached to Project - DuMuX
Summary - Handbook refers to user wiki which will be shut down
Task Type - DuMuX day
Category - General
Status - New
Assigned To - 
Operating System - Unspecified
Severity - Low
Priority - High
Reported Version - 2.9
Due in Version - 2.10
Due Date - Undecided
Details - Our handbook refers to the Dune user wiki which will be shut down 
Oktober 4th. We have to check whether we want to remove the pointer or put some 
of the content back to the handbook.

More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=330

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[DuMuX] Task 329: Suspicious calculation in air's gasViscosity

2016-09-15 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Christoph Grüninger (gruenich) 

Attached to Project - DuMuX
Summary - Suspicious calculation in air's gasViscosity
Task Type - Bug Report
Category - Material framwork
Status - New
Assigned To - 
Operating System - Unspecified
Severity - High
Priority - Normal
Reported Version - 2.9
Due in Version - 2.10
Due Date - Undecided
Details - in dumux/material/components/air.hh:134 the dipole moment is set to 
0. This leads to a pointless (probably optimized away) calculation of mu_r4. 
Either we remove the computation or fix the value of the dipole moment.

This error is with us since the initial creation of the file in 2012…

Code excerpt:
const Scalar dipole = 0.0; // dipole moment [debye]

Scalar mu_r4 = 131.3 * dipole / std::sqrt(Vc * Tc);
mu_r4 *= mu_r4;
mu_r4 *= mu_r4;

Scalar Fc = 1 - 0.2756*omega + 0.059035*mu_r4;

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[DuMuX] Task 280: Does 2pnc replaces 2p2c

2016-09-15 Thread DuMuX
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The following task has a new comment added:

FS#280 - Does 2pnc replaces 2p2c
User who did this - Johannes Hommel (Joh_Ho)

--
I think during the discussion in July, we did not think about the performance. 

I agree that we should test the performance before we make a final decision.
--

More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=280#comment711

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[DuMuX] Task 280: Does 2pnc replaces 2p2c

2016-09-09 Thread DuMuX
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The following task has a new comment added:

FS#280 - Does 2pnc replaces 2p2c
User who did this - Timo Koch (timokoch)

--
I'm quite sure it is going to be slower. I haven't tested it though. The 2p2c 
can use a specialized constraint solver in the volume variables that should be 
more efficient than the more general one needed by the 2pnc. In the interest of 
keeping this performance benefit I would keep at least the volume variables 
implementation. The same goes for the variable switch that needs different 
treatment in both models.

The only thing that can be replaced would be the localresidual then. Here I 
suggest looking into formulating a CompositionalLocalResidual class and an 
ImmiscibleLocalResidual class that could be used for 1p2c/2p2c/2pnc/3p3c and 
1p/2p/3p respectively.

I would suggest keeping the 2p2c model, open a separate Flyspray task for the 
local residual suggestion, and postpone to the next release if noone objects.  
--

More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=280#comment710

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[DuMuX] Task 328: Use math functions from std:: and allow ADL

2016-09-09 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Christoph Grüninger (gruenich) 

Attached to Project - DuMuX
Summary - Use math functions from std:: and allow ADL
Task Type - DuMuX day
Category - General
Status - New
Assigned To - 
Operating System - Unspecified
Severity - Medium
Priority - Normal
Reported Version - 2.9
Due in Version - 2.11
Due Date - Undecided
Details - We use std::pow and pow for the power function. It is adviced to use 
using namespace std; and then just pow.

We should discuss an according change of all used math functions.

This task arose from a discussion in 
https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/merge_requests/192

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[DuMuX] Task 321: DiffusivityConstantTau unused, rename tau

2016-09-09 Thread DuMuX
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The following task is now closed:

FS#321 - DiffusivityConstantTau unused, rename tau
User who did this - Christoph Grüninger (gruenich)

Reason for closing: Implemented
Additional comments about closing: Property is now called TauTortuosity and has 
a default value of 0.5 according to Carman, see newly added documentation.

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[DuMuX] Task 280: Does 2pnc replaces 2p2c

2016-09-09 Thread DuMuX
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The following task has a new comment added:

FS#280 - Does 2pnc replaces 2p2c
User who did this - Christoph Grüninger (gruenich)

--
Has someone done performance measurements? Is 2pnc as fast as 2p2c? If it has a 
negative performance impact, we should fix that or keep 2p2c.
--

More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=280#comment709

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[DuMuX] Task 324: [box/fvelementgeometry] Implement computeGeometries() for prisms

2016-08-30 Thread DuMuX
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The following task is now closed:

FS#324 - [box/fvelementgeometry] Implement computeGeometries() for prisms
User who did this - Kilian Weishaupt (Kilian)

Reason for closing: Implemented
More information can be found at the following URL:
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[DuMuX] Task 309: Uninitialised values

2016-08-30 Thread DuMuX
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The following task is now closed:

FS#309 - Uninitialised values
User who did this - Kilian Weishaupt (Kilian)

Reason for closing: Implemented
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[DuMuX] Task 323: VTK numbering

2016-08-11 Thread DuMuX
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The following task is now closed:

FS#323 - VTK numbering
User who did this - Thomas Fetzer (Thomas Fetzer)

Reason for closing: Implemented
Additional comments about closing: Implemented in 
c278897c0176c5656a75a4007347a3881a7b0ae9

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[DuMuX] Task 322: remove superfluous "Dumux::"

2016-08-11 Thread DuMuX
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The following task is now closed:

FS#322 - remove superfluous "Dumux::"
User who did this - Bernd Flemisch (bernd)

Reason for closing: Implemented
Additional comments about closing: in 35bf6f1d9d

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[DuMuX] Task 321: DiffusivityConstantTau unused, rename tau

2016-07-28 Thread DuMuX
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The following task has a new comment added:

FS#321 - DiffusivityConstantTau unused, rename tau
User who did this - Christoph Grüninger (gruenich)

--
Please have a look at the merge request 181. 
https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/merge_requests/181
--

More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=321#comment708

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[DuMuX] Task 315: "using" command interferes with doxygen

2016-07-27 Thread DuMuX
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The following task is now closed:

FS#315 - "using" command interferes with doxygen
User who did this - Johannes Hommel (Joh_Ho)

Reason for closing: Implemented
Additional comments about closing: Implemented in  merge request !174


Bernd Flemisch @bernd about 22 hours ago

mentioned in commit a53ecd27



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[DuMuX] Task 327: Release 2.10

2016-07-26 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Bernd Flemisch (bernd) 

Attached to Project - DuMuX
Summary - Release 2.10
Task Type - Feature Request
Category - General
Status - New
Assigned To - Johannes Hommel
Operating System - Unspecified
Severity - Low
Priority - Normal
Reported Version - 2.9
Due in Version - Undecided
Due Date - Undecided
Details - Manager: Joh_Ho
Scheduled for 30.9.

Lecture: Katharina
Handbook: Kilian
Doxygen: Sina
Homepage: Bernd



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[DuMuX] Task 315: "using" command interferes with doxygen

2016-07-20 Thread DuMuX
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The following task has a new comment added:

FS#315 - "using" command interferes with doxygen
User who did this - Martin Beck (martinb)

--
The problem can be solved by moving the "using" command in front of the doxygen 
description.
Example:

doxygen description
using Base::enthalpy;
template 
...

is replaced by

using Base::enthalpy;
doxygen description
template 
...

--

More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=315#comment707

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[DuMuX] Task 326: Migrate Flyspray to gitlab

2016-07-14 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Johannes Hommel (Joh_Ho) 

Attached to Project - DuMuX
Summary - Migrate Flyspray to gitlab
Task Type - Feature Request
Category - General
Status - New
Assigned To - David Werner
Operating System - Unspecified
Severity - Critical
Priority - Flash
Reported Version - 2.9
Due in Version - 2.10
Due Date - Undecided
Details - Scripts from the DUNE migration are available and only have to be 
adapted.

More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=326

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[DuMuX] Task 269: Take care of todos

2016-07-14 Thread DuMuX
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The following task is now closed:

FS#269 - Take care of todos
User who did this - Johannes Hommel (Joh_Ho)

Reason for closing: Implemented
More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=269

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[DuMuX] Task 280: Does 2pnc replaces 2p2c

2016-07-14 Thread DuMuX
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The following task has a new comment added:

FS#280 - Does 2pnc replaces 2p2c
User who did this - Johannes Hommel (Joh_Ho)

--
2pnc replaces 2p2c, but property tag an specialisations for 2 components will 
be kept.
--

More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=280#comment706

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[DuMuX] Task 311: Replace VTKMultiWriter with VTKSequenceWriter provided by Dune

2016-07-14 Thread DuMuX
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The following task is now closed:

FS#311 - Replace VTKMultiWriter with VTKSequenceWriter provided by Dune
User who did this - Johannes Hommel (Joh_Ho)

Reason for closing: Won't implement
More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=311

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[DuMuX] Task 316: Gather digital copies of literature used in dumux-stable

2016-07-14 Thread DuMuX
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The following task is now closed:

FS#316 - Gather digital copies of literature used in dumux-stable
User who did this - Johannes Hommel (Joh_Ho)

Reason for closing: Won't implement
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[DuMuX] Task 316: Gather digital copies of literature used in dumux-stable

2016-07-14 Thread DuMuX
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The following task has a new comment added:

FS#316 - Gather digital copies of literature used in dumux-stable
User who did this - Johannes Hommel (Joh_Ho)

--
It is sufficient to provide a proper bibTex entry in doxygen (with DOI or link).
--

More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=316#comment705

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[DuMuX] Task 197: Ba/Ma/PhD data storage

2016-07-14 Thread DuMuX
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The following task is now closed:

FS#197 - Ba/Ma/PhD data storage
User who did this - Johannes Hommel (Joh_Ho)

Reason for closing: Implemented
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[DuMuX] Task 316: Gather digital copies of literature used in dumux-stable

2016-07-14 Thread DuMuX
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The following task has a new comment added:

FS#316 - Gather digital copies of literature used in dumux-stable
User who did this - Johannes Hommel (Joh_Ho)

--
I suggest that we link this to FS#249 - Names and units in the 
fluidsystems/components. 

Whoever checks the material framework (fluidsystem, components etc.) for names 
and units, may at the same time compile at least a list of the literature 
cited. With this bibliography, it should be relatively easy to gather the 
literature.

However, we need to discuss where to save the gathered literature, giving 
access to all who need it, but avoiding any copyright issues.
--

More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=316#comment704

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[DuMuX] Task 197: Ba/Ma/PhD data storage

2016-07-14 Thread DuMuX
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The following task has a new comment added:

FS#197 - Ba/Ma/PhD data storage
User who did this - Johannes Hommel (Joh_Ho)

--
Users/PhD students from LH2 can now store large amounts of data within a 
personal folder on our data-user at /home/aux/data/YourName.

In my opinion, we now have enough options for data storage, depending on the 
importance, purpose and size of the data:

- input and output data of simulations connected to papers/theses --> dumux-pub
- (experimental) data related to BSc/MSc theses exceeding the input and output 
data of simulations --> on CD/DVD
- large data sets from experiments or other sources that may be of interest for 
other/later PhD students and researchers (at LH2) --> data user
- large data sets which are of no potential interest at all --> why store them?

Is there any case that I did not mention? Otherwise I would suggest to close 
this task.
--

More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=197#comment703

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[DuMuX] Task 325: default to AMGBackend?

2016-07-14 Thread DuMuX
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The following task has a new comment added:

FS#325 - default to AMGBackend?
User who did this - Bernd Flemisch (bernd)

--
Why? The AMGBackend should also work without direct solver, shouldn't it?

--

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[DuMuX] Task 325: default to AMGBackend?

2016-07-14 Thread DuMuX
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The following task has a new comment added:

FS#325 - default to AMGBackend?
User who did this - Christoph Grüninger (gruenich)

--
As a consequence we would require SuperLU or UMFPack from all our users. We can 
decide on this, but we have to keep this fact in mind.
--

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[DuMuX] Task 280: Does 2pnc replaces 2p2c

2016-07-14 Thread DuMuX
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The following task has a new comment added:

FS#280 - Does 2pnc replaces 2p2c
User who did this - Johannes Hommel (Joh_Ho)

--
Quote from some time ago: "This is a task which has to be decided for the 
release 2.9"

As we are planning the release 2.10 and apparently, as there still exists a 
2p2c model, we should decide now and document the decision. 
--

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[DuMuX] Task 325: default to AMGBackend?

2016-07-14 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Bernd Flemisch (bernd) 

Attached to Project - DuMuX
Summary - default to AMGBackend?
Task Type - Feature Request
Category - General
Status - New
Assigned To - Bernd Flemisch
Operating System - Unspecified
Severity - Low
Priority - Normal
Reported Version - 2.9
Due in Version - 2.10
Due Date - Undecided
Details - Since we got rid of our self-written parallel linear solvers, the 
default linear solvers are sequential. This prevents us from doing a parallel 
run without having to modify the problem file and to recompile.

I would prefer to set the default linear solver to the AMGBackend. Not only is 
it parallel, is also showed the best performance in a recent independent study, 
at least averaged over a range of models, discretizations and grid sizes.


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[DuMuX] Task 324: [box/fvelementgeometry] Implement computeGeometries() for prisms

2016-06-16 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Kilian Weishaupt (Kilian) 

Attached to Project - DuMuX
Summary - [box/fvelementgeometry] Implement computeGeometries() for prisms
Task Type - Bug Report
Category - General
Status - New
Assigned To - Timo Koch
Operating System - Unspecified
Severity - Medium
Priority - Normal
Reported Version - 2.9
Due in Version - Undecided
Due Date - Undecided
Details - computeGeometries() so far only works for tetrahedrons and 
hexahedrons.
Using the box method on grids with prismatic elements is not yet possible.

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[DuMuX] Task 268: gstat development

2016-05-25 Thread DuMuX
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The following task is now closed:

FS#268 - gstat development
User who did this - Thomas Fetzer (Thomas Fetzer)

Reason for closing: Implemented
Additional comments about closing: Has been implemented in MR 152

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[DuMuX] Task 323: VTK numbering

2016-05-20 Thread DuMuX
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The following task has a new comment added:

FS#323 - VTK numbering
User who did this - Timo Koch (timokoch)

--
If I recall correctly paraview handles that just fine. And dune uses numbering 
starting from 0 too. 

Someone would need to change the vtu numbers in all the CMakeLists.txt in the 
tests. 
--

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[DuMuX] Task 323: VTK numbering

2016-05-20 Thread DuMuX
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The following task has a new comment added:

FS#323 - VTK numbering
User who did this - Bernd Flemisch (bernd)

--
I'm all in favor for this. One should check if Paraview indeed takes the ...0 
file as the first one if all the vtu files are opened at once (not the pvd 
file).

--

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[DuMuX] Task 323: VTK numbering

2016-05-20 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Thomas Fetzer (Thomas Fetzer) 

Attached to Project - DuMuX
Summary - VTK numbering
Task Type - Bug Report
Category - General
Status - New
Assigned To - Thomas Fetzer
Operating System - Unspecified
Severity - Low
Priority - Normal
Reported Version - Git
Due in Version - Undecided
Due Date - Undecided
Details - I would propose to change the numbering of vtks. For me it makes more 
sense if the initial solution gets the index 0. This would have the advantage 
that the index of the vtk corresponds to the time step number.
Or is there a reason why the VTK numbering is as it is? 

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[DuMuX] Task 306: Unify and generalize diffusive fluxes

2016-05-11 Thread DuMuX
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The following task has a new comment added:

FS#306 - Unify and generalize diffusive fluxes
User who did this - Alexander Kissinger (alexk)

--
A unified dispersion model similar to the one available in the 1p2c model 
should also be considered in a similar fashion as the diffusion model.
--

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[DuMuX] Task 301: Solution dependent spatial parameters

2016-04-29 Thread DuMuX
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The following task has a new comment added:

FS#301 - Solution dependent spatial parameters
User who did this - Timo Koch (timokoch)

--
Does this mean that the permeability in the local residual is taken from volume 
variables? always? And call an empty material law?
This would mean that we always copy the permeability into the volume variables 
on update also for models (95%)
that don't use solution dependent spatial params.
--

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[DuMuX] Task 301: Solution dependent spatial parameters

2016-04-29 Thread DuMuX
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The following task has a new comment added:

FS#301 - Solution dependent spatial parameters
User who did this - Alexander Kissinger (alexk)

--
At the Dumux meeting today we discussed this topic:

A favored implementation is to implement solution dependent spatial parameters 
as fluid-matrix-interactions, which is basically what they are. 
This means that within the volume-variables a material law for permeabiliy, 
porosity etc is called which gets the current volume variables and the spatial 
parameters as an argument. In this way no direct calls to the spatial 
parameters from the volume variables would be necessary anymore. The material 
laws could then be set with a property similar to the capillary pressure or the 
effective heat conductivity.

If the user wants to implement his own material law he could do so on the 
material level without having to touch the model level.
--

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[DuMuX] Task 275: Easier handling of boundary conditions and sources

2016-04-12 Thread DuMuX
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The following task has a new comment added:

FS#275 - Easier handling of boundary conditions and sources
User who did this - Bernd Flemisch (bernd)

--
I somehow would like to get a python interface in the long run. Most likely, 
something in this direction will be done in one of Dune's Google Summer of Code 
projects and we can profit from the experiences made there. There's no need to 
rush this.

"Somehow" means that I also share Christoph's opinion. I think that a Python 
interface will not be of too much use for our PhD students. Maybe even a burden 
because some of them additionally have to learn Python. On the other hand, I 
can imagine quite a benefit for persons who only want to "use" Dumux, whatever 
that means. And that would include (some/most of) our Bachelor and Master 
students.

As an intermediate step, I was thinking of defining some common boundary 
condition types like "no flow", "fully saturated hydrostatic", "all constant 
Dirichlet values", ...  and providing a possibility to set them for every dof / 
scvf or also for something like the top/bottom/front... of the domain. I'm 
unsure if this is worth the effort.

--

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[DuMuX] Task 275: Easier handling of boundary conditions and sources

2016-04-12 Thread DuMuX
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The following task has a new comment added:

FS#275 - Easier handling of boundary conditions and sources
User who did this - Christoph Grüninger (gruenich)

--
Introducing another language (beside C++, C++ templates, and if you want 
property system, input files and CMake) increases the complexity. I am not sure 
whether the benefit does outweigh this.
--

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[DuMuX] Task 275: Easier handling of boundary conditions and sources

2016-04-12 Thread DuMuX
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The following task has a new comment added:

FS#275 - Easier handling of boundary conditions and sources
User who did this - Timo Koch (timokoch)

--
Yes. Point sources make it easier to specify e.g. a simple well now.
However, this was also related to making it possible to specify sources and 
boundary conditions
through the input file. Looking into this I think the only practically feasible 
way is to use a Python interface.
As an example of simple to more complex C++ interaction with Python see e.g. 
dune-fufem/dune/fufem/test/dunepythontest.cc.
(seems to be fairly easy to use and implement)

The reason for this is that for a flexible control of the boundary conditions 
and sources we really need to specify
functions and maybe use if/else constructs in the input file in order to do 
more than already available (set constant values, set a switch choosing at 
runtime between different implementations of the boundary conditions function).

If someone has a good HIWI I would give that a try. What do other people think?
--

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[DuMuX] Task 322: remove superfluous "Dumux::"

2016-04-12 Thread DuMuX
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The following task has a new comment added:

FS#322 - remove superfluous "Dumux::"
User who did this - Timo Koch (timokoch)

--
I think the Dune:: prefix here was actually wrong / less general. It think it 
doesn't work with grids placed in another namespace than Dune because Dune 
intended to make that work through ADL.

Nevertheless we should probably make it consistent. I actually find your first 
example more readable. Our problem are always implemented in their own header 
which we put in the Dumux namespace. In a cc file however I would personally 
not put anything in a namespace and always use the correct namespace specifier. 
As problem and spatial params are kind of our cc file extensions
I would personally make it clear there where things come from, although it 
should be already clear given the namespace...
No strong opposition here.

I think we can discuss this and execute changes at the next Dumux day?


--

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[DuMuX] Task 322: remove superfluous "Dumux::"

2016-04-11 Thread DuMuX
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The following task has a new comment added:

FS#322 - remove superfluous "Dumux::"
User who did this - Bernd Flemisch (bernd)

--
Recently, we merged
https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/merge_requests/65

This change affected 138 files. It removed the "Dune::" from the "elements" and 
"intersections" functions. The only argument given was that the compiler is 
able to do it. While I liked that change, it is much more obscure than the one 
proposed now, since we now call a function from within a namespace "Dumux" that 
is out of another namespace "Dune" without qualifying it like this.

I really see no reason why I should use the namespace qualifier if I want to 
use a name from the very namespace that I'm in, apart from avoiding technical 
ambiguities. We also never say

namespace Dumux {
...
class LensProblem : public Dumux::ImplicitPorousMediaProblem
...
}

--

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[DuMuX] Task 322: remove superfluous "Dumux::"

2016-04-11 Thread DuMuX
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The following task has a new comment added:

FS#322 - remove superfluous "Dumux::"
User who did this - Bernd Flemisch (bernd)

--
We also have files where it is mixed. For example, in 
test/porousmediumflow/2p/implicit/lensproblem.hh, every property setting until 
line 94 gets a "Dumux::", everything below doesn't. We should at least make it 
consistent throughout a file.

--

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[DuMuX] Task 322: remove superfluous "Dumux::"

2016-04-11 Thread DuMuX
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The following task has a new comment added:

FS#322 - remove superfluous "Dumux::"
User who did this - Bernd Flemisch (bernd)

--
Compare
typedef Dumux::FluidSystems::LiquidPhase > type;
with
typedef FluidSystems::LiquidPhase > type;

or
SET_TYPE_PROP(OnePNIConductionProblem, Fluid,
      Dumux::FluidSystems::LiquidPhase >);
with
SET_TYPE_PROP(OnePNIConductionProblem, Fluid,
  FluidSystems::LiquidPhase >);

To me, the lines without "Dumux::" are quite a bit better to read. I also would 
say that most names in Dumux that aren't qualified by "Dune::" or "std::" are 
from the namespace Dumux.

If removing yields an error, the occurrence is not superfluous.

--

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[DuMuX] Task 320: Implementation of dispersion in 1p2c not correct for cell centred disc.

2016-04-11 Thread DuMuX
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The following task has a new comment added:

FS#320 - Implementation of dispersion in 1p2c not correct for cell centred disc.
User who did this - Timo Koch (timokoch)

--
In the cc method the velocity is only approximated as normal velocity on the 
face (TPFA). The velocity is not given on the cell centers. The cell velocity 
we compute is an interpolated one.

I don't know right now to compute the dispersion tensor on the face correctly 
so this is just a comment.
--

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[DuMuX] Task 321: DiffusivityConstantTau unused, rename tau

2016-04-11 Thread DuMuX
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The following task has a new comment added:

FS#321 - DiffusivityConstantTau unused, rename tau
User who did this - Timo Koch (timokoch)

--
Isn't it a spatial param, thus better in group SpatialParams? Technically it's 
probably also not reasonable to be a property because it depends on the 
material so it should be different (theoretically if values are available) and 
thus be defined in the Spatialparams. Are there other params like this? Maybe a 
turtuosity function that returns a default in the base spatialparams class is 
an option?
--

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[DuMuX] Task 322: remove superfluous "Dumux::"

2016-04-11 Thread DuMuX
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The following task has a new comment added:

FS#322 - remove superfluous "Dumux::"
User who did this - Timo Koch (timokoch)

--
I think it actually makes things more clear. It's then obvious that it comes 
from the Dumux namespace.
I wouldn't go so far as to make it mandatory and not operate in namespace Dumux 
but I don't think it clutters the code.

Also I experienced some difficulties with certain versions of GCC where 
something like
typedef BoundingBoxTree BoundingBoxTree;
threw an error saying I redefine the symbol BoundingBoxTree with another 
meaning while
typedef Dumux::BoundingBoxTree BoundingBoxTree;
worked just fine.
--

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[DuMuX] Task 322: remove superfluous "Dumux::"

2016-04-11 Thread DuMuX
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The following task has a new comment added:

FS#322 - remove superfluous "Dumux::"
User who did this - Christoph Grüninger (gruenich)

--
Is it worth the effort? Someone has to do it, it clutters the history of 
changed lines and sometimes it is even helpful.

We could think about not adding to to new files, but I wouldn't  do a massive 
removal of them.
--

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[DuMuX] Task 322: remove superfluous "Dumux::"

2016-04-11 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Bernd Flemisch (bernd) 

Attached to Project - DuMuX
Summary - remove superfluous "Dumux::"
Task Type - Feature Request
Category - General
Status - New
Assigned To - 
Operating System - Unspecified
Severity - Low
Priority - Normal
Reported Version - 2.9
Due in Version - 2.10
Due Date - Undecided
Details - There are more than 1000 occurrences of "Dumux::" in the .hh files of 
Dumux stable. Most, if not all of them, should be superfluous. I propose to 
delete those superfluous occurrences.


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[DuMuX] Task 321: DiffusivityConstantTau unused, rename tau

2016-04-06 Thread DuMuX
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The following task has a new comment added:

FS#321 - DiffusivityConstantTau unused, rename tau
User who did this - Christoph Grüninger (gruenich)

--
Thanks for the hint, tau was defined in the input file, thus my grep missed it.

Moving it to "Problem" and renaming it, remains for this task.
--

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[DuMuX] Task 321: DiffusivityConstantTau unused, rename tau

2016-04-06 Thread DuMuX
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The following task has a new comment added:

FS#321 - DiffusivityConstantTau unused, rename tau
User who did this - Thomas Fetzer (Thomas Fetzer)

--
There is a test in material/fluidmatrixinteractions. I would propose to shift 
tau to a meaningful group, e.g. SpatialParams or at least to Problem.
--

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[DuMuX] Task 321: DiffusivityConstantTau unused, rename tau

2016-04-06 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Christoph Grüninger (gruenich) 

Attached to Project - DuMuX
Summary - DiffusivityConstantTau unused, rename tau
Task Type - Bug Report
Category - 2p
Status - New
Assigned To - Christoph Grüninger
Operating System - Unspecified
Severity - Low
Priority - Normal
Reported Version - 2.9
Due in Version - 2.10
Due Date - Undecided
Details - No test case seems to use DiffusivityConstantTau.

Additionally, I propose to rename the property "tau" to "TortuosityTau" or just 
"Turtuosity", as the former is hardly meaningful or unique.

More information can be found at the following URL:
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[DuMuX] Task 320: Implementation of dispersion in 1p2c not correct for cell centred disc.

2016-03-30 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Alexander Kissinger (alexk) 

Attached to Project - DuMuX
Summary - Implementation of dispersion in 1p2c not correct for cell centred 
disc.
Task Type - Bug Report
Category - General
Status - New
Assigned To - 
Operating System - Unspecified
Severity - Low
Priority - Normal
Reported Version - 2.9
Due in Version - Undecided
Due Date - Undecided
Details - I noticed that the implementation of dispersion in the 1p2c model may 
not be correct for applications using the cell centered discretization.
The dispersion tensor needs to be evaluated at the interface between two dofs. 
It requires the velocity at that location. 
For the Box method this can easily be achieved using the potential gradient 
evaluated from multiple dofs in the element. For the CC method however the 
potential gradient calculated currently at the interface only depends on the 
two opposing dofs (i and j). This will generally not result in the correct 
velocity.
A correct implementation would require an interpolation of the two cell 
velocities i and j at the interface.

Example:
Flow parallel to the interface between i and j would result in a zero velocity 
at the interface as there is no potential gradient between i and j and the 
velocity component parallel to the interface is not considered. As a result 
also the transverse dispersion would be zero.




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[DuMuX] Task 299: Release 2.9

2016-03-29 Thread DuMuX
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The following task is now closed:

FS#299 - Release 2.9
User who did this - Kilian Weishaupt (Kilian)

Reason for closing: Implemented
More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=299

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[DuMuX] Task 286: Cleanup after introduction of new gridcreator

2016-03-24 Thread DuMuX
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The following task is now closed:

FS#286 - Cleanup after introduction of new gridcreator
User who did this - Kilian Weishaupt (Kilian)

Reason for closing: Implemented
More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=286

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[DuMuX] Task 299: Release 2.9

2016-03-22 Thread DuMuX
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The following task has a new comment added:

FS#299 - Release 2.9
User who did this - Bernd Flemisch (bernd)

--
I created a corresponding merge request 113.
--

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[DuMuX] Task 249: Names and units in the fluidsystems/components

2016-03-22 Thread DuMuX
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The following task has a new comment added:

FS#249 - Names and units in the fluidsystems/components
User who did this - Kilian Weishaupt (Kilian)

--
While the material folder has been worked over, there is still work to do in 
other classes.
Might be a potential job for a Hiwi.
--

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[DuMuX] Task 312: Generalize electrochemistry class

2016-03-22 Thread DuMuX
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The following task is now closed:

FS#312 - Generalize electrochemistry class
User who did this - Kilian Weishaupt (Kilian)

Reason for closing: Implemented
Additional comments about closing: Major issues have been fixed and the model 
will be compatible for 2.9.
However, further improvements and generalizations might still be done (e.g., 
the reaction layer is still restricted to one grid cell).

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[DuMuX] Task 241: move 2pMINC/dualcontinuum to stable

2016-03-22 Thread DuMuX
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The following task is now closed:

FS#241 - move 2pMINC/dualcontinuum to stable
User who did this - Bernd Flemisch (bernd)

Reason for closing: Deferred
Additional comments about closing: 2pminc has been moved to stable. Currently, 
there is no interest / are no personal resources to move also the dual 
continuum model. Re-open if necessary.

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[DuMuX] Task 299: Release 2.9

2016-03-22 Thread DuMuX
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The following task has a new comment added:

FS#299 - Release 2.9
User who did this - Christoph Grüninger (gruenich)

--
We still ship istl and grid patches for 2.3. Can we either drop them or put 
them on-top of dune 2.4.1?
--

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[DuMuX] Task 291: How to deal with solutes?

2016-03-14 Thread DuMuX
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The following task is now closed:

FS#291 - How to deal with solutes?
User who did this - Kilian Weishaupt (Kilian)

Reason for closing: Implemented
More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=291

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[DuMuX] Task 319: [MaterialLaws] Generalize EffToAbsLaw, Regularization

2016-03-10 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Kilian Weishaupt (Kilian) 

Attached to Project - DuMuX
Summary - [MaterialLaws] Generalize EffToAbsLaw, Regularization
Task Type - Feature Request
Category - Material framwork
Status - New
Assigned To - 
Operating System - Unspecified
Severity - Low
Priority - Normal
Reported Version - Git
Due in Version - Undecided
Due Date - Undecided
Details - It should be possible for the user to use a definition 
like

using MaterialLaw = VanGenuchten 

The Params should have a default constructor setting the way of regularization 
and the conversion from absolute to relative quantities.
Both procedures could be generalized.

The materiallaw gets the absolute value and calls a method to convert it to a 
relative one (defined in a general class). Similarly a method for 
regularization defined in a general class is called by the materiallaw itself.

This reduces the number of classes required and makes everything more clear.

More information can be found at the following URL:
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[DuMuX] Task 318: Make base flux variables members private

2016-03-08 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Timo Koch (timokoch) 

Attached to Project - DuMuX
Summary - Make base flux variables members private
Task Type - Feature Request
Category - Implicit models
Status - New
Assigned To - 
Operating System - Unspecified
Severity - Low
Priority - Normal
Reported Version - Git
Due in Version - Undecided
Due Date - Undecided
Details - The flux variable base classes contain at least a face index, an fv 
geometry pointer, and a boundary flag as protected member. These should be 
private and be accessible only via designated return functions.

face() already exists. onBoundary() needs to be added (boundary() would be a 
better fit to the dune grid interface).
fvGeometry_() is not public but needs to be accessible to the deriving classes, 
thus it probably should be protected.
It might be introduced through branch 
feature/make-flux-vars-default-construbtable soon.

More information can be found at the following URL:
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[DuMuX] Task 317: More use of copydoc in material

2016-03-08 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Alexander Kissinger (alexk) 

Attached to Project - DuMuX
Summary - More use of copydoc in material
Task Type - Feature Request
Category - Documentation
Status - New
Assigned To - 
Operating System - Unspecified
Severity - Low
Priority - Normal
Reported Version - Git
Due in Version - Undecided
Due Date - Undecided
Details - There is still some duplicate doxygen documentation in the material 
folder, for example the FluidState set-functions all have the same 
documentation. 

This could be a task for an upcoming Dumux day or a Hiwi.

More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=317

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[DuMuX] Task 289: Fluid Framework Description inside the Handbook

2016-03-08 Thread DuMuX
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The following task is now closed:

FS#289 - Fluid Framework Description inside the Handbook
User who did this - Alexander Kissinger (alexk)

Reason for closing: Implemented
Additional comments about closing: - All relevant information from Fluid 
Framework was moved to Doxygen (Modules->Material and Fluid Framework)
- The handbook section was replaced by a reference to Doxygen

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[DuMuX] Task 252: Change names "decoupled" and "implicit"?

2016-03-07 Thread DuMuX
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The following task is now closed:

FS#252 - Change names "decoupled" and "implicit"?
User who did this - Kilian Weishaupt (Kilian)

Reason for closing: Implemented
More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=252

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[DuMuX] Task 260: Improve/update content of the website

2016-03-07 Thread DuMuX
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The following task is now closed:

FS#260 - Improve/update content of the website
User who did this - Christoph Grüninger (gruenich)

Reason for closing: Implemented
Additional comments about closing: page created. Thanks for these writing the 
texts.

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http://www.dumux.org/flyspray/index.php?do=details&task_id=260

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[DuMuX] Task 252: Change names "decoupled" and "implicit"?

2016-03-07 Thread DuMuX
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The following task has a new comment added:

FS#252 - Change names "decoupled" and "implicit"?
User who did this - Kilian Weishaupt (Kilian)

--
Renaming in handbook/tutorial done
--

More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=252#comment678

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[DuMuX] Task 308: Doxygen description for different models

2016-03-02 Thread DuMuX
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The following task is now closed:

FS#308 - Doxygen description for different models
User who did this - Kilian Weishaupt (Kilian)

Reason for closing: Implemented
More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=308

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[DuMuX] Task 316: Gather digital copies of literature used in dumux-stable

2016-02-25 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Alexander Kissinger (alexk) 

Attached to Project - DuMuX
Summary - Gather digital copies of literature used in dumux-stable
Task Type - Feature Request
Category - General
Status - New
Assigned To - 
Operating System - Unspecified
Severity - Low
Priority - Normal
Reported Version - Git
Due in Version - Undecided
Due Date - Undecided
Details - A lot of literature is being cited within the material framework 
(fluidsystem, components etc.) 
Should we gather this literature somewhere, so if in doubt we can always lookup 
the relations?

This could be a potential Hiwi-job.

More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=316

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[DuMuX] Task 276: Improve the documentation of the tests

2016-02-24 Thread DuMuX
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The following task is now closed:

FS#276 - Improve the documentation of the tests
User who did this - Kilian Weishaupt (Kilian)

Reason for closing: Implemented
More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=276

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[DuMuX] Task 315: "using" command interferes with doxygen

2016-02-24 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Martin Beck (martinb) 

Attached to Project - DuMuX
Summary - "using" command interferes with doxygen
Task Type - Bug Report
Category - Documentation
Status - New
Assigned To - 
Operating System - Unspecified
Severity - Medium
Priority - Normal
Reported Version - Git
Due in Version - Undecided
Due Date - Undecided
Details - While working on an update for the description of some functions of 
the fluidsystems, I noticed that my changes do not appear in the doxygen. After 
a bit of investigation, I found out that the "using" command is to be blamed. 
Apparently, it copies the description of the function, to which the "using" 
command refers to and ignores the description of the actual function.
One example: For the enthalpy function of the brine-air fluid system, the 
description of the base fluid systems shows up instead of the specific 
description where some references are provided. So this information is lost and 
one becomes only aware of if one goes through the source code.  

More information can be found at the following URL:
http://www.dumux.org/flyspray/index.php?do=details&task_id=315

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[DuMuX] Task 314: test_adaptive2p2c2d has invalid downcast

2016-02-23 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Christoph Grüninger (gruenich) 

Attached to Project - DuMuX
Summary - test_adaptive2p2c2d has invalid downcast
Task Type - Bug Report
Category - General
Status - New
Assigned To - 
Operating System - Unspecified
Severity - Low
Priority - Normal
Reported Version - Git
Due in Version - 2.10
Due Date - Undecided
Details - test_adaptive2p2c2d with undefined behavior sanitizer gives an error 
about an illegal cast:

dumux/dumux/porousmediumflow/sequential/impetproblem.hh:836:15: runtime error: 
downcast of address 0x7ffe0d58ba10 which does not point to an object of type 
'Adaptive2p2c2d'
0x7ffe0d58ba10: note: object has invalid vptr
 00 00 00 00  00 00 00 00 00 00 00 00  78 50 aa 31 d9 7f 00 00  60 e6 7e 03 00 
00 00 00  00 00 00 00
  ^~~
  invalid vptr


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[DuMuX] Task 313: test_adaptive2p2c2d.cc triggers has duplicate condition

2016-02-23 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Christoph Grüninger (gruenich) 

Attached to Project - DuMuX
Summary - test_adaptive2p2c2d.cc triggers has duplicate condition
Task Type - Bug Report
Category - Decoupled models
Status - New
Assigned To - 
Operating System - Unspecified
Severity - Low
Priority - Normal
Reported Version - Git
Due in Version - 2.10
Due Date - Undecided
Details - GCC 6 with -Wduplicated-cond emits the following warning. Having a 
look into the code, it seems like a real bug to me.

In file included from 
/temp/gruenich/dune/test241/dumux/dumux/porousmediumflow/2p2c/sequential/fv3dpressureadaptive.hh:36:0,
 from 
/temp/gruenich/dune/test241/dumux/dumux/porousmediumflow/2p2c/sequential/adaptiveproperties.hh:68,
 from 
/temp/gruenich/dune/test241/dumux/test/porousmediumflow/2p2c/sequential/test_adaptive2p2c2dproblem.hh:36,
 from 
/temp/gruenich/dune/test241/dumux/test/porousmediumflow/2p2c/sequential/test_adaptive2p2c2d.cc:26:
/temp/gruenich/dune/test241/dumux/dumux/porousmediumflow/2p2c/sequential/fvmpfal3dinteractionvolumecontaineradaptive.hh:
 In member function ‘int 
Dumux::FvMpfaL3d2P2CInteractionVolumeContainerAdaptive::getMpfaCase2or4cells(const
 IntersectionIterator&, 
Dumux::FvMpfaL3d2P2CInteractionVolumeContainerAdaptive::InteractionVolume&,
 bool&)’:
/temp/gruenich/dune/test241/dumux/dumux/porousmediumflow/2p2c/sequential/fvmpfal3dinteractionvolumecontaineradaptive.hh:496:18:
 warning: duplicated ‘if’ condition [-Wduplicated-cond]
 else if(mapJ== 3)
  ^~
/temp/gruenich/dune/test241/dumux/dumux/porousmediumflow/2p2c/sequential/fvmpfal3dinteractionvolumecontaineradaptive.hh:492:13:
 note: previously used here
 if (mapJ== 3){
 ^~


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[DuMuX] Task 263: Don't build executables on make test

2016-02-23 Thread DuMuX
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The following task is now closed:

FS#263 - Don't build executables on make test
User who did this - Christoph Grüninger (gruenich)

Reason for closing: Deferred
Additional comments about closing: We ask users to use Dune 2.4. We prefer the 
bahvior we get with Dune 2.4. If someone uses Dune 3.0, it's the users duty to 
know how to is handled by Dune 3.0.

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[DuMuX] Task 260: Improve/update content of the website

2016-02-23 Thread DuMuX
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The following task has a new comment added:

FS#260 - Improve/update content of the website
User who did this - Christoph Grüninger (gruenich)

--
* introduce new category "Dumux module"
* sub pages are stable, devel and lecture
* stable contains link to GitLab
--

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[DuMuX] Task 260: Improve/update content of the website

2016-02-22 Thread DuMuX
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The following task has a new comment added:

FS#260 - Improve/update content of the website
User who did this - Christoph Grüninger (gruenich)

--
Should we add the build-system documentation generated with Sphinx? This would 
include all functions and macros from all dependencies (core modules, PDELab, 
etc.).
--

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[DuMuX] Task 307: Automatically save restart file before simulation breaks down

2016-02-10 Thread DuMuX
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The following task is now closed:

FS#307 - Automatically save restart file before simulation breaks down
User who did this - Kilian Weishaupt (Kilian)

Reason for closing: Implemented
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[DuMuX] Task 305: calculation of derivatives for cap. and rel. perm functions

2016-02-09 Thread DuMuX
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The following task is now closed:

FS#305 - calculation of derivatives for cap. and rel. perm functions
User who did this - Kilian Weishaupt (Kilian)

Reason for closing: Implemented
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[DuMuX] Task 309: Uninitialised values

2016-02-09 Thread DuMuX
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The following task has a new comment added:

FS#309 - Uninitialised values
User who did this - Kilian Weishaupt (Kilian)

--
The dune-alugrid related issues seem to be fixed 
(https://gitlab.dune-project.org/extensions/dune-alugrid/issues/3#note_14244)

However, valgrind still yields errors at other test, e.g. 
test_boxmpncthermalnonequil
--

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[DuMuX] Task 252: Change names "decoupled" and "implicit"?

2016-02-07 Thread DuMuX
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The following task has a new comment added:

FS#252 - Change names "decoupled" and "implicit"?
User who did this - Kilian Weishaupt (Kilian)

--
The renaming must also be considered in the handbook / tutorial!
--

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[DuMuX] Task 305: calculation of derivatives for cap. and rel. perm functions

2016-02-05 Thread DuMuX
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The following task has a new comment added:

FS#305 - calculation of derivatives for cap. and rel. perm functions
User who did this - Timo Koch (timokoch)

--
Why throw something. Can't they get deprecated?
--

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[DuMuX] Task 305: calculation of derivatives for cap. and rel. perm functions

2016-02-05 Thread DuMuX
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The following task has a new comment added:

FS#305 - calculation of derivatives for cap. and rel. perm functions
User who did this - Kilian Weishaupt (Kilian)

--
I have changed dsw to dswe. No changes to tests ect. had to be made because 
dx_dsw is still available in the effToAbsLaw.

The only problem that might occur is if someone still uses dx_dsw without using 
the effToAbsLaw. Should we leave to old functions in Brookscorey and 
VanGenuchten and let them return a DUNE_Throw? Might be a bit confusing and 
messy, though.

--

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[DuMuX] Task 312: Generalize electrochemistry class

2016-02-04 Thread DuMuX
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The following task has a new comment added:

FS#312 - Generalize electrochemistry class
User who did this - Timo Koch (timokoch)

--
This won't work after the 2.9 release because of the removal of the 
CubeGridCreator...
--

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[DuMuX] Task 312: Generalize electrochemistry class

2016-02-04 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Timo Koch (timokoch) 

Attached to Project - DuMuX
Summary - Generalize electrochemistry class
Task Type - Feature Request
Category - Material framwork
Status - New
Assigned To - 
Operating System - Unspecified
Severity - Low
Priority - Normal
Reported Version - Git
Due in Version - Undecided
Due Date - Undecided
Details - The electrochemistry is currently implemented as a reaction source 
term but only works for
* sources on the boundary
* box models
* structured 2d grid (it reads the deprecated UpperRightX, NumCellsX,...)

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[DuMuX] Task 298: FluidState and Property System

2016-02-04 Thread DuMuX
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The following task is now closed:

FS#298 - FluidState and Property System
User who did this - Kilian Weishaupt (Kilian)

Reason for closing: Implemented
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[DuMuX] Task 298: FluidState and Property System

2016-02-03 Thread DuMuX
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The following task has a new comment added:

FS#298 - FluidState and Property System
User who did this - Kilian Weishaupt (Kilian)

--
Can't find the fluidstate property in the decoupled models.
Has the commit been pushed to master?
--

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[DuMuX] Task 309: Uninitialised values

2016-02-03 Thread DuMuX
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The following task has a new comment added:

FS#309 - Uninitialised values
User who did this - Kilian Weishaupt (Kilian)

--
At least some of the problems seem to be caused by dune-alugrid.

Running dune-alugrid/build-cmake/examples/testEfficiency> valgrind 
./main_ball_eff yields a conditional jump over unitialized values. Bernd has 
reported this bug to the developers of dune-alugrid.

MemorySanitizer does only work with prepared libraries. libstdc++ is not 
prepared, thus MemorySanitizer is not useful for us (causing false positives).
http://stackoverflow.com/a/20784130


--

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[DuMuX] Task 289: Fluid Framework Description inside the Handbook

2016-02-02 Thread DuMuX
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The following task has a new comment added:

FS#289 - Fluid Framework Description inside the Handbook
User who did this - Alexander Kissinger (alexk)

--
The function mergeing could be done by a Hiwi. Any canditates?
--

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[DuMuX] Task 269: Take care of todos

2016-02-02 Thread DuMuX
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The following task has a new comment added:

FS#269 - Take care of todos
User who did this - Kilian Weishaupt (Kilian)

--
majority of todos in porousmediumflow and material are unlikely to be ever 
implemented

we should take care of all others, especially the "please doc me" todos
--

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[DuMuX] Task 311: Replace VTKMultiWriter with VTKSequenceWriter provided by Dune

2016-02-02 Thread DuMuX
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A new Flyspray task has been opened.  Details are below. 

User who did this - Timo Koch (timokoch) 

Attached to Project - DuMuX
Summary - Replace VTKMultiWriter with VTKSequenceWriter provided by Dune
Task Type - Feature Request
Category - General
Status - New
Assigned To - Timo Koch
Operating System - Unspecified
Severity - Low
Priority - Normal
Reported Version - Git
Due in Version - Undecided
Due Date - Undecided
Details - The dune implementation is much easier to handle and upstream 
maintained. If all the functions are available with the Dune VTKWriter we can 
remove ours.

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[DuMuX] Task 289: Fluid Framework Description inside the Handbook

2016-02-02 Thread DuMuX
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The following task has a new comment added:

FS#289 - Fluid Framework Description inside the Handbook
User who did this - Alexander Kissinger (alexk)

--
The general parts (description of fluidstate, fluidsystem etc.) have been 
shifted to doxygen and have been placed in the appropriate group descriptions. 
The functions remain to be merged with the doxygen function description as both 
the existing function documentation in doxygen and the one in the handbook are 
different. This may take some more time.

--

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[DuMuX] Task 276: Improve the documentation of the tests

2016-02-02 Thread DuMuX
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The following task has a new comment added:

FS#276 - Improve the documentation of the tests
User who did this - Beatrix Becker (Beatrix)

--
DumuxDay Feb 2: All features are summarized in a table (sequential, implicit, 
freeflow, materiallaw, multidomain). Part of the table is already online 
(doxygen), only sequential missing.
--

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[DuMuX] Task 303: beautify README

2016-02-02 Thread DuMuX
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The following task is now closed:

FS#303 - beautify README
User who did this - Timo Koch (timokoch)

Reason for closing: Implemented
Additional comments about closing: Changelog was already written in markdown 
just renamed it finished this task with commit 3a38cf0d

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[DuMuX] Task 304: Remove TypeTags ExplicitModel and ImplicitModel

2016-02-02 Thread DuMuX
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The following task is now closed:

FS#304 - Remove TypeTags ExplicitModel and ImplicitModel
User who did this - Timo Koch (timokoch)

Reason for closing: Implemented
Additional comments about closing: Implemented in commit 10796c01

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[DuMuX] Task 298: FluidState and Property System

2016-02-02 Thread DuMuX
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The following task has a new comment added:

FS#298 - FluidState and Property System
User who did this - Beatrix Becker (Beatrix)

--
Already done for all sequential models at the DumuxDay on February 2
--

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[DuMuX] Task 282: replace alberta with dune-foamgrid

2016-02-02 Thread DuMuX
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The following task is now closed:

FS#282 - replace alberta with dune-foamgrid
User who did this - Timo Koch (timokoch)

Reason for closing: Implemented
Additional comments about closing: Implemented in commit d74539ca.

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[DuMuX] Task 303: beautify README

2016-02-02 Thread DuMuX
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The following task has a new comment added:

FS#303 - beautify README
User who did this - Christoph Grüninger (gruenich)

--
Done for dumux-lecture. Done for dumux-stable except CHANGELOG, I would mandate 
a Hiwi to do so.
--

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[DuMuX] Task 263: Don't build executables on make test

2016-01-28 Thread DuMuX
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The following task has a new comment added:

FS#263 - Don't build executables on make test
User who did this - Christoph Grüninger (gruenich)

--
With Dune 3.0: make does nothing, make build_tests builds the tests but only in 
the root directory
With Dune 2.4: make does nothing in root, make in test builds the tests 
recursively
With Dune 2.3: no longer supported

We can mimic the 3.0 behavior in 2.4 similar to what dune-multidomain 2.4 does. 
Is this desired?
--

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[DuMuX] Task 211: Convenience functions should always be used in fluxVars

2016-01-28 Thread DuMuX
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The following task is now closed:

FS#211 - Convenience functions should always be used in fluxVars
User who did this - Kilian Weishaupt (Kilian)

Reason for closing: Implemented
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[DuMuX] Task 211: Convenience functions should always be used in fluxVars

2016-01-28 Thread DuMuX
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The following task has a new comment added:

FS#211 - Convenience functions should always be used in fluxVars
User who did this - Kilian Weishaupt (Kilian)

--
The functions have been implemented everywhere except

dumux/porousmediumflow/implicit/darcyfluxvariables.hh
dumux/porousmediumflow/implicit/forchheimerfluxvariables.hh
dumux/material/chemistry/electrochemistry/electrochemistry.hh
dumux/io/plotoverline2d.hh

Do to the nature of these classes, convenience functions will not be used there.

--

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