Hi,
is there any update on this issue?
Cheers,
Christian
On 8/27/19 2:06 PM, Loris Bennett wrote:
Hi Åke,
Ah, thanks for the information. The change must have happened
post 3.2.6, as I have a working easyconfig for that version.
I would in fact be happy to install an older version, but an apparently
bumpy transition from Sourceforge to Github seems to have broken all the
archived source packages :-(
Cheers,
Loris
Åke Sandgren <ake.sandg...@hpc2n.umu.se> writes:
You're not doing anything wrong, but since MrBayes changed layout
between some 3.2 version and 3.2.7 the easyblock need to be updated.
(Don't have time to look at this myself)
On 8/27/19 1:23 PM, Loris Bennett wrote:
Hi,
With EasyBuild 3.9.4 and the following easyconfig:
name = 'MrBayes'
version = '3.2.7'
homepage = 'http://nbisweden.github.io'
description = "MrBayes is a program for the Bayesian estimation of
phylogeny."
toolchain = {'name': 'foss', 'version': '2018b'}
toolchainopts = {'usempi': True}
source_urls = ['https://github.com/NBISweden/MrBayes/archive']
sources = ['v%(version)s.tar.gz']
dependencies = [
('beagle-lib', '3.0.2'),
('libreadline', '7.0'),
]
builddependencies = [
('Autotools', '20180311'),
]
moduleclass = 'bio'
I have the following error for a
== 2019-08-27 13:12:36,748 run.py:173 DEBUG run_cmd: running cmd autoconf
(in /trinity/shared/easybuild/build/MrBayes/3.2.7/foss-2018b/MrBayes-3.2.7/src)
== 2019-08-27 13:12:36,748 run.py:192 INFO running cmd: autoconf
== 2019-08-27 13:12:36,960 build_log.py:163 ERROR EasyBuild crashed with an
error (at
easybuild/software/EasyBuild/3.9.4/lib/python2.7/site-packages/vsc_base-2.8.4-py2.7.egg/vsc/utils/exceptions.py:124
in __init__): cmd "autoconf" exited with exit code 1 and output:
autoconf: error: no input file
As the unpacked tarball has the structure
/trinity/shared/easybuild/build/MrBayes/3.2.7/foss-2018b/MrBayes-3.2.7/
├── aclocal.m4
├── am-aux
├── am-macros
├── configure
├── configure.ac
├── COPYING
├── doc
├── examples
├── INSTALL
├── Makefile.am
├── Makefile.in
├── NEWS
├── README
├── src
└── TODO
autoconf should be run in .../MrBayes-3.2.7, rather than
.../MrBayes-3.2.7/src
What am I doing wrong?
Cheers,
Loris
