Postdoc: Modeling Influenza Evolution

2007-04-24 Thread Troy Day
Two Postdoctoral Fellowships in the Mathematical Evolutionary Epidemiology of 
Influenza.
 
Applications are sought from outstanding researchers for two postdoctoral 
positions in the 
mathematical evolutionary epidemiology of influenza, in the labs of Drs. Troy 
Day (Queen’s 
University, Canada), Jonathan Dushoff (McMaster University, Canada), David Earn 
(McMaster 
University, Canada), and Junling Ma (University of Victoria, Canada). Both 
positions will be for a 
period of two years, and will involve developing and analyzing mathematical and 
simulation 
models of influenza evolution. Positions should be taken up by Sept. 1, 2007. 
Duties will also 
include the teaching of two one-semester courses per year. Salary will begin at 
C$40,000 per year.
 
For more information on research in our labs see: www.mast.queensu.ca/~tday, 
http://
www.eeb.princeton.edu/~dushoff/, http://www.math.mcmaster.ca/earn/, and 
www.math.uvic.ca/
~jma.
 
To apply, send a current curriculum vitae and arrange to have two letters of 
reference sent to Dr. 
Troy Day at  [EMAIL PROTECTED]
 
Alternatively, materials can be sent by post to:
Troy Day
Dept. of Mathematics and Statistics
Jeffery Hall, Queen’s University
Kingston, ON, K7L 3N6
CANADA
 
Deadline for applications is May 15, 2007.


Marmot Volunteer Field Assistant Wanted

2007-04-24 Thread Thea Wang
Marmot Volunteer Field Assistant
Location:  White Mountains, California (near Bishop and Lone Pine)
Description:  Field assistant volunteer needed to work in a PhD dissertation
project aimed at studying the social behavior of yellow-bellied marmots. The
study examines social structure and behavioral roles.  Duties include
assisting with live trapping, restraining and measuring marmots, observing
with a spotting scope, taking detailed behavioral observation notes and
entering data. This is a great opportunity to gain field experience for
graduate school. 

Candidates must be available to work for the summer field season from June
11 – September 1, 2007. Dates are slightly flexible. 

Qualifications:  Candidates must be comfortable living and working at a high
altitude remote field station (12500 feet/3800 meters) with hantavirus risk.
  She/he should have an interest in biology and animal behavior, the desire
to wake up early, hike carrying equipment, work long hours and deal with
inclement weather.  Attention to detail is important.  Previous field
experience is encouraged but not necessary.  The volunteer is expected to
cover his/her travel costs. 
Salary: 0

Compensation:
Housing and food will be provided. Applicant will receive training and
experience in trapping and wild animal restraint.

If you would like any further information please contact me at:
[EMAIL PROTECTED]

If you are interested in the position please email a brief letter stating
your interest in the project and relevant experience and a CV to the email
below.   Include the contact information of at least 2 references. 
Thea Wang
[EMAIL PROTECTED] 


Re: nonparametric repeated measures

2007-04-24 Thread Highland Statistics Ltd.
On Mon, 23 Apr 2007 12:50:48 -0400, Lucy  <[EMAIL PROTECTED]> wrote:

>I'm working with some percent cover data from plots that have been 
measured
>annually for the past five years.  In several plots and during some years
>there is little to no vegetation coverage, so the data are heavily skewed;
>the common transformations (log, square root) haven't worked.  Is there a
>way to do repeated measures analyses on non-normal data?  Is PROC MIXED
>robust enough to handle nonparametric data?  Thanks for your help!
>

Lucy,
I think you are a bit confused. If longitudinal data analysis/mixed 
modelling does not work, then try generalised linear mixed modelling (e.g. 
a Poisson or Neg. Binomial with an auto-correlation structure). But this 
is something different than non-parametric stats.

Not sure about SASbut yes...PROC MIXED is for Gaussian mixed modelling 
(I think). Not sure which package to use for GLMM in SAS. In R, it is nlme 
(mixed modelling), lmer, glmmPQL or glmmML.

You could also try GLS.

All methods are also explained in our mixed modelling course in October 
2007. See http://www.highstat.com/statscourse.htm


Alain

---
Dr. Alain F. Zuur
First author of:   

1. Analysing Ecological Data (2007).  
Zuur, AF, Ieno, EN and Smith, GM. Springer. 680 p.
URL: www.springer.com/0-387-45967-7


2. Analysing Ecological data using GLMM and GAMM in R. (2008). 
Zuur, AF, Ieno, EN, Walker, N and Smith, GM. Springer.


3. An introduction to R for the life scientists: - With a paper submission 
guide - (2008).
Zuur, AF, Ieno, EN and Meesters, EHGW. Springer


Other books: http://www.brodgar.com/books.htm


Statistical consultancy, courses, data analysis and software
Highland Statistics Ltd.
6 Laverock road
UK - AB41 6FN Newburgh
Tel: 0044 1358 788177
Email: [EMAIL PROTECTED]
URL: www.highstat.com
URL: www.brodgar.com





>Lucy
>=


Re: Amazon Rainforest "facts" - a more general question

2007-04-24 Thread Robert Miller
My understanding is that terrestrial vegetation is not a significant net
oxygen source because the organic matter produced is all oxidized in a
relatively short time.  Most atmospheric oxygen is present due to burial of
particulate organic matter, i.e. phytoplankton, in continental slope
sediments, where it is taken out of the system.  Please see also
http://www.columbia.edu/cu/21stC/issue-2.1/broecker.htm
Bob Miller

On 4/24/07, William Silvert <[EMAIL PROTECTED]> wrote:
>
> I think this is a common problem, not just for the Amazon. A nature
> conservancy I have visited in a mangrove area claims that 95% of all
> primary
> production comes from mangrove swamps. It would help to have a reliable
> source for the general questions of where regeneration of oxygen occurs,
> where pharmaceuticals come from, and so on.
>
> Bill Silvert
>
> - Original Message -
> From: "SUBSCRIBE ECOLOG-L Jacob Lowe" <[EMAIL PROTECTED]>
> To: 
> Sent: Tuesday, April 24, 2007 4:16 PM
> Subject: Amazon Rainforest "facts"
>
>
> > Greetings everyone,
> >
> > As many of you know, I've spent the last year speaking at schools across
> > Texas on work that Projects Abroad is doing in the Peruvian Amazon at
> the
> > Taricaya Research Center.  During my presentations, I like to give a
> quick
> > "overview" of some of the encyclopedia-style "facts" about the Amazon,
> > like
> > biological diversity estimates, deforestation estimates, "tropical
> > pharmacy
> > to the world", etc at the beginning of the presentation.  These
> statements
> > have included the following "facts" that I've retrieved from websites
> like
> > www.rain-tree.com, which does not cite any sources:
> >
> > 1.  The Amazon Rainforest has been described as the "Lungs of our
> Planet"
> > because it provides the essential environmental world service of
> > continuously recycling carbon dioxide into oxygen. More than 20 percent
> of
> > the world oxygen is produced in the Amazon Rainforest.
> >
> > 2.  Currently, 121 prescription drugs currently sold worldwide come from
> > plant-derived sources. And while 25% of Western pharmaceuticals are
> > derived
> > from rainforest ingredients, less than 1% of these tropical trees and
> > plants
> > have been tested by scientists.
> >
> > 3.  The U.S. National Cancer Institute has identified 3000 plants that
> are
> > active against cancer cells. 70% of these plants are found in the
> > rainforest. Twenty-five percent of the active ingredients in today's
> > cancer-fighting drugs come from organisms found only in the rainforest.
> >
> > The more I read these claims, the more uncomfortably I am repeating them
> > to
> > students without any assurance of their accuracy.  Can anyone here
> > elaborate
> > on some of these claims?  For example, I've read where statement (1) is
> a
> > myth, and rainforest plants don't actually contribute any significant
> net
> > increase in atmospheric O2.  For claim number (2), I'd like to know
> > specifically which drugs come from the Amazon.  Number (3) I'm having
> > little
> > luck from the U.S. Cancer Institutes's website.
> >
> > Most importantly, I'm having little luck getting sources from
> > www.rain-tree.com.
>



-- 
Robert J. Miller, Ph.D.
Postdoctoral Scholar
Santa Barbara Coastal LTER
Marine Science Institute
University of California, Santa Barbara
Santa Barbara CA 93106-6150
(805) 893-7295


Re: Amazon Rainforest "facts" - a more general question

2007-04-24 Thread Max Taub
One reference for the global oxygen cycle is Schlesinger, W. H. 
Biogeochemistry: An Analysis of Global Change. I will use numbers from 
the 2nd edition-

The atmosphere contains 3.7 X 10^19 moles of O2. Biotic fluxes are about 
8 X 10^15 moles per year. So all of the earth's biota annually exchange 
about 1/4000 of the atmospheric O2.

Another way of looking at this is to compare concentrations of O2 with 
the amount of CO2 available in the atmosphere for photosynthesis. The 
atmosphere is approximately 20.946% O2 and 0.038% CO2. If the amazon or 
the entire flora of the earth were to suddenly take up all of the CO2 in 
the atmosphere by photosynthesis, it appears to me that this would 
liberate enough O2 gas to raise the concentration to 20.984%, a trivial 
relative change. In other words contemporary photosynthesis has little 
to do with the fact that we have large amounts of O2 in the atmosphere.

The O2 in our atmosphere is due to  photosynthesis across 100s of 
millions of years and per Schlesinger is is balanced by the storage of 
pyrite and organic C in the earth's crust not by contemporary biotic carbon.


Max Taub




William Silvert wrote:
> I think this is a common problem, not just for the Amazon. A nature 
> conservancy I have visited in a mangrove area claims that 95% of all primary 
> production comes from mangrove swamps. It would help to have a reliable 
> source for the general questions of where regeneration of oxygen occurs, 
> where pharmaceuticals come from, and so on.
>
> Bill Silvert
>
> - Original Message - 
> From: "SUBSCRIBE ECOLOG-L Jacob Lowe" <[EMAIL PROTECTED]>
> To: 
> Sent: Tuesday, April 24, 2007 4:16 PM
> Subject: Amazon Rainforest "facts"
>
>
>   
>> Greetings everyone,
>>
>> As many of you know, I've spent the last year speaking at schools across
>> Texas on work that Projects Abroad is doing in the Peruvian Amazon at the
>> Taricaya Research Center.  During my presentations, I like to give a quick
>> "overview" of some of the encyclopedia-style "facts" about the Amazon, 
>> like
>> biological diversity estimates, deforestation estimates, "tropical 
>> pharmacy
>> to the world", etc at the beginning of the presentation.  These statements
>> have included the following "facts" that I've retrieved from websites like
>> www.rain-tree.com, which does not cite any sources:
>>
>> 1.  The Amazon Rainforest has been described as the "Lungs of our Planet"
>> because it provides the essential environmental world service of
>> continuously recycling carbon dioxide into oxygen. More than 20 percent of
>> the world oxygen is produced in the Amazon Rainforest.
>>
>> 2.  Currently, 121 prescription drugs currently sold worldwide come from
>> plant-derived sources. And while 25% of Western pharmaceuticals are 
>> derived
>> from rainforest ingredients, less than 1% of these tropical trees and 
>> plants
>> have been tested by scientists.
>>
>> 3.  The U.S. National Cancer Institute has identified 3000 plants that are
>> active against cancer cells. 70% of these plants are found in the
>> rainforest. Twenty-five percent of the active ingredients in today's
>> cancer-fighting drugs come from organisms found only in the rainforest.
>>
>> The more I read these claims, the more uncomfortably I am repeating them 
>> to
>> students without any assurance of their accuracy.  Can anyone here 
>> elaborate
>> on some of these claims?  For example, I've read where statement (1) is a
>> myth, and rainforest plants don't actually contribute any significant net
>> increase in atmospheric O2.  For claim number (2), I'd like to know
>> specifically which drugs come from the Amazon.  Number (3) I'm having 
>> little
>> luck from the U.S. Cancer Institutes's website.
>>
>> Most importantly, I'm having little luck getting sources from
>> www.rain-tree.com. 
>> 

-- 
Daniel Taub
Assistant Professor of Biology
Southwestern University
1001 East University Ave
Georgetown TX 78626 USA

Phone: 512 863-1583
Fax: 512 863-1696
[EMAIL PROTECTED]


SCIENCE Truth Discipline in writing and speaking Re: Amazon Rainforest "facts"

2007-04-24 Thread Wayne Tyson
Howdy y'all,

Lowe's point, unfortunately, needs emphasis, and his candor is 
admirable--he will do to cross the river with. In the 21'st Century, 
not to mention all of history, the essence of science has been the 
pursuit of truth. It is an oft-sworn-to and endlessly-repeated dictum 
that all science must stand on evidence. Scholars have long 
recognized that the essence of scholarship is proof, and it should go 
without saying that ALL claims of any kind must cite sources and 
evidence. All scholarship must be open to critical review and stand 
the test of verification by "replication." In the 21st Century there 
is no excuse for failing to publish in the open and to cite sources 
and data, including links to supporting literature. However, the mere 
citing of literature is grossly insufficient, as the literature cited 
may be faulty. The reader/reviewer must be presented with the 
evidence and theoretical foundations for every claim made in the body 
of the paper, and not be expected to read all of the cited literature 
to make sense of the claims and evaluate the evidence.

ANY paper, lecture, or comment to reporters, etc. should stand on 
such standards. Mere opinion should never substitute for testable 
truth, no matter how noble the motive (misleading or inaccurate 
statements erode the credibility, not only of the authors, but their 
disciplines. Scientists, or any responsible person who claims 
"expertise," has the slightest degree of celebrity or is known by a 
reputation should never make a statement that cannot be backed up and 
stand the test of truth. This does not mean, however, that "going 
beyond the data" is a cardinal sin. Probing the edges is the 
meristematic tissue of the intellect. But even that probing should be 
at least as strongly subjected to critical review, and it should 
never be represented as anything but what it is. Such probings should 
take care to make it clear that such is the case, and the theoretical 
foundations should be sound. The absence of evidence should be an 
up-front centerpiece of the theoretical structure, not covered with 
academic cosmetics.

Is there a lot of literature out there, not to mention less formal 
publications and statements that do not meet such criteria? How much 
of it is from the discipline of ecology? Is there a lot of literature 
out there that conceals and obfuscates more than it reveals and 
proves, often, if not largely, by misleadingly long lists of 
citations which the authors haven't read or evaluated, convoluted 
Greek and graphs and jargon-laced hyperbole, not to mention sheer 
volume and weight? I really don't know, from my inadequate samples, 
how much of the ecological literature is valid and how much is 
publish-or-perish flim-flam. We all make misteaks--that's why open 
review (including, but not limited to peers) is essential to science. 
Cover-ups and authoritarian denial is the province of government ain't it?

If I have committed any sins of omission or commission here, please 
expose my incompetence.

Respectfully submitted,
WT

PS: Perhaps this forum could compile a list of websites that do and 
do not provide evidence, citations, data, and theoretical foundations 
for their claims. (I fear that the number of sites that survive such 
scrutiny might be very small, but what a burden would be lifted, eh?) 
On-line research would be greatly facilitated, no?

"[The responsibility of the journalist (reviewer)] is to comfort the 
afflicted and afflict the comfortable." --H. L. Menken


At 08:16 AM 4/24/2007, SUBSCRIBE ECOLOG-L Jacob Lowe wrote:
>Greetings everyone,
>
>As many of you know, I've spent the last year speaking at schools across
>Texas on work that Projects Abroad is doing in the Peruvian Amazon at the
>Taricaya Research Center.  During my presentations, I like to give a quick
>"overview" of some of the encyclopedia-style "facts" about the Amazon, like
>biological diversity estimates, deforestation estimates, "tropical pharmacy
>to the world", etc at the beginning of the presentation.  These statements
>have included the following "facts" that I've retrieved from websites like
>www.rain-tree.com, which does not cite any sources:
>
>1.  The Amazon Rainforest has been described as the "Lungs of our Planet"
>because it provides the essential environmental world service of
>continuously recycling carbon dioxide into oxygen. More than 20 percent of
>the world oxygen is produced in the Amazon Rainforest.
>
>2.  Currently, 121 prescription drugs currently sold worldwide come from
>plant-derived sources. And while 25% of Western pharmaceuticals are derived
>from rainforest ingredients, less than 1% of these tropical trees and plants
>have been tested by scientists.
>
>3.  The U.S. National Cancer Institute has identified 3000 plants that are
>active against cancer cells. 70% of these plants are found in the
>rainforest. Twenty-five percent of the active ingredients in today's
>cancer-fighting drugs come from organisms fo

Re: nonparametric repeated measures

2007-04-24 Thread Stephen B. Cox
Yes - this alleviates the assumption of normality (although I am not
sure if I would classify % cover as binomial/logit).  This biggest
hurdle for generalized mixed (or the usual mixed models) for Lucy,
though, is how to generate tests of her main effects.  I don't know
what SAS is doing these days, but there really is no consensus on how
to test for treatment effects outside of interpretation of model
parameters.  (e.g., there has been a bit of discussion on this related
to the new R library 'lmer' for doing mixed effects models)

On 4/24/07, Bahram Momen <[EMAIL PROTECTED]> wrote:
> The best option in SAS is using 'PROC GLIMMIX' and define an appropriate
> 'DISTribution' and a related 'LINK' function.
>
> Bahram Momen
> Environmental Science & Statistics
> 1108 H.J. Patterson Hall
> Environmental Science & Technology Dept.
> University of Maryland
> College Park, MD 20742
>
> 301 405 1332, [EMAIL PROTECTED]
>
>
>
> Stephen B. Cox wrote:
> > Hi Lucy - although I would recommend a mixed model for a variety of
> > reasons (in particular, you can model heteroscedasticity), it does
> > still assume normality.  So, the mixed model does not necessarily
> > solve issues of "nonparametric data" (I think you mean "nonnormal").
> > As I see it, you have a couple of options ...
> >
> > a) if your data are well-balanced, there is literature that suggests
> > that most ANOVA related analyses perform relatively well despite
> > non-normal errors.
> >
> > b) analyze rank-transformed data, but there can still be issues here
> > (especially if you have a lot of 'ties').  You can also do a mixed
> > model on ranks, but you have to be aware of, and model, the effects
> > that rank transformations can have on variances.
> >
> > You could also look into bootstrap approaches for repeated measures
> > data, but I don't recall much about this off the top of my head.
> > Opinions vary considerably on this topic - (FWIW, I would tend to go
> > with option a) - but much of the decision depends on the details of
> > your data.
> >
> > Stephen
> >
> >
> >
> > On 4/23/07, Lucy <[EMAIL PROTECTED]> wrote:
> >
> >> I'm working with some percent cover data from plots that have been measured
> >> annually for the past five years.  In several plots and during some years
> >> there is little to no vegetation coverage, so the data are heavily skewed;
> >> the common transformations (log, square root) haven't worked.  Is there a
> >> way to do repeated measures analyses on non-normal data?  Is PROC MIXED
> >> robust enough to handle nonparametric data?  Thanks for your help!
> >>
> >> Lucy
> >>
> >>
>


summer field technician position

2007-04-24 Thread Danny Fry
Stephens Lab at UC Berkeley is advertising a summer field position. 

Project Description:  
This project examines the effects of prescribed fire & mechanical treatments
on knobcone pine regeneration in the northern California Coast Range.  We
are investigating the impacts of these treatments on 1) seedling
establishment and density, 2) shrub & herbaceous plant abundance and 3) fuel
loading.  The goal of this research project is to provide information to
land managers about the ecological effects of these land management
strategies.  Study sites are located at the Bureau of Land Management Cow
Mountain Recreation Area and the University of California Hopland Research &
Extension Center in Mendocino County, approximately 2.5 hours north of San
Francisco. 
 
Job Description:  
One field technician is needed to assist a research assistant in
post-treatment forest structure, vegetation, and fuel measurements. Field
tasks will include but are not limited to: 1) typical forest inventory
measurements, 2) detailed plant surveys, and 3) seedling density surveys.
Field work will be conducted in dense standing and cut knobcone pine forests
often surrounded by chaparral.  Technicians are needed for up to 3 months of
work – and start dates are flexible. The weekly work schedule will typically
be four ten-hour days with an early morning start. 

Additional Qualifications:  
•Coursework or experience in forestry, natural resources management, forest
ecology, or related field is desired but not required.
•Applicants with strong botany interest and proficiency in identifying
plants using keys are strongly preferred.  
•Use of spreadsheet applications; ability to use or learn to use handheld
data recorders, radios, other field equipment
•This position is physically demanding and will require the ability to work
on steep slopes in hot sun for long periods. Applicants must also be willing
to work in dense brush and in buggy conditions. 
•Exposure to poison oak, ticks, bees, rattlesnakes and other chaparral and
knobcone pine environmental hazards are also likely. 
•Technicians must be comfortable living in a bunkhouse or other shared
living facility during the work week.
•Technicians may need to have own vehicle and be willing to drive to and
from field sites.

Please see  http://www.cnr.berkeley.edu/stephens-lab/students.htm   for
additional information. Thank you


Re: Amazon Rainforest "facts" - a more general question

2007-04-24 Thread William Silvert
I think this is a common problem, not just for the Amazon. A nature 
conservancy I have visited in a mangrove area claims that 95% of all primary 
production comes from mangrove swamps. It would help to have a reliable 
source for the general questions of where regeneration of oxygen occurs, 
where pharmaceuticals come from, and so on.

Bill Silvert

- Original Message - 
From: "SUBSCRIBE ECOLOG-L Jacob Lowe" <[EMAIL PROTECTED]>
To: 
Sent: Tuesday, April 24, 2007 4:16 PM
Subject: Amazon Rainforest "facts"


> Greetings everyone,
>
> As many of you know, I've spent the last year speaking at schools across
> Texas on work that Projects Abroad is doing in the Peruvian Amazon at the
> Taricaya Research Center.  During my presentations, I like to give a quick
> "overview" of some of the encyclopedia-style "facts" about the Amazon, 
> like
> biological diversity estimates, deforestation estimates, "tropical 
> pharmacy
> to the world", etc at the beginning of the presentation.  These statements
> have included the following "facts" that I've retrieved from websites like
> www.rain-tree.com, which does not cite any sources:
>
> 1.  The Amazon Rainforest has been described as the "Lungs of our Planet"
> because it provides the essential environmental world service of
> continuously recycling carbon dioxide into oxygen. More than 20 percent of
> the world oxygen is produced in the Amazon Rainforest.
>
> 2.  Currently, 121 prescription drugs currently sold worldwide come from
> plant-derived sources. And while 25% of Western pharmaceuticals are 
> derived
> from rainforest ingredients, less than 1% of these tropical trees and 
> plants
> have been tested by scientists.
>
> 3.  The U.S. National Cancer Institute has identified 3000 plants that are
> active against cancer cells. 70% of these plants are found in the
> rainforest. Twenty-five percent of the active ingredients in today's
> cancer-fighting drugs come from organisms found only in the rainforest.
>
> The more I read these claims, the more uncomfortably I am repeating them 
> to
> students without any assurance of their accuracy.  Can anyone here 
> elaborate
> on some of these claims?  For example, I've read where statement (1) is a
> myth, and rainforest plants don't actually contribute any significant net
> increase in atmospheric O2.  For claim number (2), I'd like to know
> specifically which drugs come from the Amazon.  Number (3) I'm having 
> little
> luck from the U.S. Cancer Institutes's website.
>
> Most importantly, I'm having little luck getting sources from
> www.rain-tree.com. 


Re: Fwd: Global Warming Swindle

2007-04-24 Thread Geoffrey Poole
The book Warren cites was facilitated by the Union of Concerned 
Scientists.  More information is available here:

http://www.ucsusa.org/publications/scientist-media-guide.html

It provides scientists with an alternative to "keeping mum" while 
reducing the chances of being misquoted in the media.

People need to hear what scientists know and what they learn.  It seems 
there is also a certain obligation to communicate findings to the public 
for those of us who get research funding from public sources.

Communication with the media does carry with it certain risks, but as 
more and more scientists simply refuse to communicate, we take on 
exposure to an alternative set of risks (e.g., the larger effects of a 
lack of science in our public discourse).

-Geoff Poole


Warren W. Aney wrote:
> If you are a scientist and you are going to be talking to the media, you
> should first read "A Scientist's Guide to Talking With the Media" by Hayes
> and Grossman (2006, Rutgers University Press).  On page 77 this book talks
> about reviewing copy before it is printed (sometimes you can and sometimes
> you can't, but don't make it a precondition).
> 
> Warren Aney
> (503)246-8613
> 
> -Original Message-
> From: Ecological Society of America: grants, jobs, news
> [mailto:[EMAIL PROTECTED] Behalf Of David M. Lawrence
> Sent: Monday, 23 April, 2007 07:17
> To: ECOLOG-L@LISTSERV.UMD.EDU
> Subject: Re: Fwd: Global Warming Swindle
> 
> 
> The take-home lesson is to be careful whom you talk to and be careful what
> you say to them.  Someone requests an interview, practice due diligence.  If
> you've never heard of them before, check them out.  Make sure they are
> legitimate journalists.  Ask if they are members of organizations like the
> National Association of Science Writers, the Society of Environmental
> Journalists, the Society of Professional Journalists, etc.
> 
> I work as both a journalist and a scientist.  As a journalist, I would never
> offer anyone such an agreement as proposed.  As a scientist, I would never
> request such an agreement.
> 
> The role of the journalist is supposed to to be an independent voice -- a
> skeptical filter for the public.  Journalists are not supposed to be
> mouthpieces for institutions, corporations, celebrities -- even scientists.
> 
> I don't think any reputable scientist would want to give up intellectual
> control over his research.  Why would a scientist ask a journalist to give
> up editorial control of his reporting?
> 
> Dave
> 
> --
>  David M. Lawrence| Home:  (804) 559-9786
>  7471 Brook Way Court | Fax:   (804) 559-9787
>  Mechanicsville, VA 23111 | Email: [EMAIL PROTECTED]
>  USA  | http:  http://fuzzo.com
> --
> 
> "We have met the enemy and he is us."  -- Pogo
> 
> "No trespassing
>  4/17 of a haiku"  --  Richard Brautigan
> 
> -Original Message-
> From: Ecological Society of America: grants, jobs, news
> [mailto:[EMAIL PROTECTED] On Behalf Of joseph gathman
> Sent: Monday, April 23, 2007 7:47 AM
> To: ECOLOG-L@LISTSERV.UMD.EDU
> Subject: Re: Fwd: Global Warming Swindle
> 
> 
> 
> On a different note, the lesson to learn from the
> scientist who was misquoted seems to be:  don't talk
> to the media unless they give you, in writing, the
> right of approval or rejection of what they do with
> your words.  Of course, they probably won't do that...
> 
> Joe
> 
> 


Amazon Rainforest "facts"

2007-04-24 Thread SUBSCRIBE ECOLOG-L Jacob Lowe
Greetings everyone,

As many of you know, I've spent the last year speaking at schools across
Texas on work that Projects Abroad is doing in the Peruvian Amazon at the
Taricaya Research Center.  During my presentations, I like to give a quick
"overview" of some of the encyclopedia-style "facts" about the Amazon, like
biological diversity estimates, deforestation estimates, "tropical pharmacy
to the world", etc at the beginning of the presentation.  These statements
have included the following "facts" that I've retrieved from websites like
www.rain-tree.com, which does not cite any sources:

1.  The Amazon Rainforest has been described as the "Lungs of our Planet"
because it provides the essential environmental world service of
continuously recycling carbon dioxide into oxygen. More than 20 percent of
the world oxygen is produced in the Amazon Rainforest.

2.  Currently, 121 prescription drugs currently sold worldwide come from
plant-derived sources. And while 25% of Western pharmaceuticals are derived
from rainforest ingredients, less than 1% of these tropical trees and plants
have been tested by scientists.

3.  The U.S. National Cancer Institute has identified 3000 plants that are
active against cancer cells. 70% of these plants are found in the
rainforest. Twenty-five percent of the active ingredients in today's
cancer-fighting drugs come from organisms found only in the rainforest.

The more I read these claims, the more uncomfortably I am repeating them to
students without any assurance of their accuracy.  Can anyone here elaborate
on some of these claims?  For example, I've read where statement (1) is a
myth, and rainforest plants don't actually contribute any significant net
increase in atmospheric O2.  For claim number (2), I'd like to know
specifically which drugs come from the Amazon.  Number (3) I'm having little
luck from the U.S. Cancer Institutes's website.

Most importantly, I'm having little luck getting sources from
www.rain-tree.com.  


Re: nonparametric repeated measures

2007-04-24 Thread Bahram Momen
The best option in SAS is using 'PROC GLIMMIX' and define an appropriate 
'DISTribution' and a related 'LINK' function.

Bahram Momen
Environmental Science & Statistics
1108 H.J. Patterson Hall
Environmental Science & Technology Dept.
University of Maryland
College Park, MD 20742

301 405 1332, [EMAIL PROTECTED]



Stephen B. Cox wrote:
> Hi Lucy - although I would recommend a mixed model for a variety of
> reasons (in particular, you can model heteroscedasticity), it does
> still assume normality.  So, the mixed model does not necessarily
> solve issues of "nonparametric data" (I think you mean "nonnormal").
> As I see it, you have a couple of options ...
>
> a) if your data are well-balanced, there is literature that suggests
> that most ANOVA related analyses perform relatively well despite
> non-normal errors.
>
> b) analyze rank-transformed data, but there can still be issues here
> (especially if you have a lot of 'ties').  You can also do a mixed
> model on ranks, but you have to be aware of, and model, the effects
> that rank transformations can have on variances.
>
> You could also look into bootstrap approaches for repeated measures
> data, but I don't recall much about this off the top of my head.
> Opinions vary considerably on this topic - (FWIW, I would tend to go
> with option a) - but much of the decision depends on the details of
> your data.
>
> Stephen
>
>
>
> On 4/23/07, Lucy <[EMAIL PROTECTED]> wrote:
>   
>> I'm working with some percent cover data from plots that have been measured
>> annually for the past five years.  In several plots and during some years
>> there is little to no vegetation coverage, so the data are heavily skewed;
>> the common transformations (log, square root) haven't worked.  Is there a
>> way to do repeated measures analyses on non-normal data?  Is PROC MIXED
>> robust enough to handle nonparametric data?  Thanks for your help!
>>
>> Lucy
>>
>> 


La Selva Biological Station/Costa Rica....

2007-04-24 Thread J. Michael Nolan
For those of you who have studied at and/or visited La Selva. Thanks.

Mike Nolan

Costa Rica: Collapse in biodiversity in protected Costa Rican rainforest =

Source: Guardian News Service (in The Hindu, India, 17 April 2007)

A protected rainforest in one of the world's richest biodiversity =
hotspots has suffered an alarming collapse in amphibians and reptiles, =
suggesting such havens may fail to slow the creatures' slide towards =
global extinction.=20

Conservationists working in a lowland forest reserve at La =
Selva in Costa Rica used biological records dating from 1970 to show =
that species of frogs, toads, lizards, snakes and salamanders have =
plummeted on average 75% in the past 35 years.=20

Dramatic falls in amphibian and reptile numbers elsewhere in =
the world have been blamed on habitat destruction and the fungal disease =
chytridiomycosis, which has inflicted a devastating toll across central =
and South America. But scientists hoped many species would continue to =
thrive in dedicated reserves, where building, land-clearance and =
agricultural chemicals are banned.=20

The new findings suggest an unknown ecological effect is =
behind at least some of the sudden losses and have prompted scientists =
to call for urgent studies in other protected forest areas. The =
researchers, led by Maureen Donelly at Florida International University, =
believe climate change has brought warmer, wetter weather to the refuge, =
with the knock-on effect of reducing the amount of leaf litter on the =
forest floor. Nearly all of the species rely on leaf litter to some =
extent, either using it for shelter, or feeding on insects that eat the =
leaves.=20

The researchers also analysed weather records for the =
region, which revealed a rise of more than 1C in temperature over the =
35-year period and a doubling of the number of wet days. The study was =
published in the journal Proceedings of the National Academy of Sciences =
yesterday. "All of the falls recorded elsewhere have been in high, =
mountainous regions and those have mostly been driven by the spread of =
fungus. All of the tests we've done for the fungus here have been =
negative," said Steven Whitfield, a co-author of the study.=20

The scientists say it is crucial to extend the study to =
other protected forests, such as those in Peru, Ecuador and Colombia, to =
assess the populations of amphibians and reptiles there. "If we are to =
design effective conservation strategies, we need to know what's causing =
these declines. If it's down to a link between climate and leaf litter, =
then we need to better understand that," said Mr Whitfield.=20

Amphibians are considered delicate sentinels of =
environmental change. Sudden population collapses were first noticed =
during the 1980s, during which more than 120 species are thought to have =
become extinct.=20

For full story, please see: =
http://www.hindu.com/thehindu/holnus/008200704170921.htm


--

If we are on another line or away from the phone, please leave your =
number, best time to return your call and/or your e-mail address.
=20
After hours and weekend phone appointments are available upon request.

Sincerely,

J. Michael Nolan, Director
=20
Rainforest and Reef 501 (c)(3) non-profit

*=
**
"Outstanding-Affordable Field Courses in Rainforest & Marine Ecology"

"Spanish/Cultural Immersion: Spain, Mexico, Central and South America"

Rainforest and Reef 501 (c)(3) non-profit
P.O. Box 141543
Grand Rapids, Michigan 49514-1543 USA
Local/International Phone: 001.616.604.0546
Toll Free U.S. and Canada: 1.877.255.3721
Skype/MS IM: travelwithrandr
AOL IM: buddythemacaw
E-mail: [EMAIL PROTECTED] and [EMAIL PROTECTED]
*Note: Please send inquiries to both e-mail addresses
Web: http://rainforestandreef.org

Costa Rica:
Juan Pablo Bello
San Jose, Costa Rica
E-mail: [EMAIL PROTECTED]
Phone: 011.506.290.8883/011.506.822.8222=20

Europe:
Marion Stephan
Frankfurt, Germany
E-mail: [EMAIL PROTECTED]
Phone: 011.49.172.305.4738
*=
**


Re: nonparametric repeated measures

2007-04-24 Thread John Gerlach
My understanding is that you data consists of a significant number of zero 
cover responses. If this is the case then your problem is that the cover 
response data is a mixture of a continuous type response and a presence/absence 
type response and no type of transformation will help. One alternative is to 
code all of your data in terms of the presence/absence type response using 
appropriate models and then running a separate MANOVA analysis on a subset of 
the original data that does not have zero cover if you have enough replicates 
and if your data do not become too heavily unbalanced. This is probably not 
what you hoped for when you designed your experiment and it will require that 
you restate the hypotheses for both of the cases that you are testing. It 
should also present you with some interesting things to consider as to why your 
data includes all those zeros such as your responses are very lose to the 
detection limits because of your sampling design, that there are
 spatial scale issues present, etc.

John Gerlach

- Original Message 
From: David Inouye <[EMAIL PROTECTED]>
To: ECOLOG-L@LISTSERV.UMD.EDU
Sent: Tuesday, April 24, 2007 6:03:35 AM
Subject: Re: [ECOLOG-L] nonparametric repeated measures

How about to transform the data using LOG?

jiazy
2007-04-24
[EMAIL PROTECTED]

In response to:
I'm working with some percent cover data from plots that have been measured
annually for the past five years.  In several plots and during some years
there is little to no vegetation coverage, so the data are heavily skewed;
the common transformations (log, square root) haven't worked.  Is there a
way to do repeated measures analyses on non-normal data?  Is PROC MIXED
robust enough to handle nonparametric data?  Thanks for your help!

Lucy


Re: nonparametric repeated measures

2007-04-24 Thread Stephen B. Cox
Hi Lucy - although I would recommend a mixed model for a variety of
reasons (in particular, you can model heteroscedasticity), it does
still assume normality.  So, the mixed model does not necessarily
solve issues of "nonparametric data" (I think you mean "nonnormal").
As I see it, you have a couple of options ...

a) if your data are well-balanced, there is literature that suggests
that most ANOVA related analyses perform relatively well despite
non-normal errors.

b) analyze rank-transformed data, but there can still be issues here
(especially if you have a lot of 'ties').  You can also do a mixed
model on ranks, but you have to be aware of, and model, the effects
that rank transformations can have on variances.

You could also look into bootstrap approaches for repeated measures
data, but I don't recall much about this off the top of my head.
Opinions vary considerably on this topic - (FWIW, I would tend to go
with option a) - but much of the decision depends on the details of
your data.

Stephen



On 4/23/07, Lucy <[EMAIL PROTECTED]> wrote:
> I'm working with some percent cover data from plots that have been measured
> annually for the past five years.  In several plots and during some years
> there is little to no vegetation coverage, so the data are heavily skewed;
> the common transformations (log, square root) haven't worked.  Is there a
> way to do repeated measures analyses on non-normal data?  Is PROC MIXED
> robust enough to handle nonparametric data?  Thanks for your help!
>
> Lucy
>


Fw: Global Warming Swindle

2007-04-24 Thread Mark E Kubiske
I agree with David.  Be careful who you talk to.  The Forest Service
requires us to report requests for interviews to our media relations office
so that the credibility of the reporter can be verified.  We do this
regularly unless its a reporter we know, such as a local radio or
television reporter.

We've had a number of dealings with the press at our FACE experiment.
Credible science reporters want to get the story right.  We've let them
know that we're dealing with complicated issues and we'd like a chance to
review their presentation before it goes to press.   Some of them have even
asked us if we'd be willing to review the transcript.   We've asked
reporters to be sure to acknowledge certain institutions in their story,
and they have faithfully agreed to do so.  Many of them send us their copy
to make sure the details are accurate.   Even radio reporters have sent us
their transcripts before the piece aired.   Most of our problems come when
a story goes out on the wires and is picked up by some other news
organization.  That's when the story gets edited and sometimes distorted.
Other than contacting that particular editor and pointing out the errors
this is beyond anyone's control

The time we got burned the most is when one large-city newspaper ran a full
page story on our elevated CO2 open-topped chanber experiments under the
title of "End of the Earth Research" and described how we were testing
trees poisoned with carbon monoxide.

--
Mark E. Kubiske
Research Plant Physiologist
USDA Forest Service, Northern Research Station
Forestry Sciences Lab
5985 Hwy K
Rhinelander, WI 54501

Office phone:  715-362-1108
Cell phone: 715-367-5258
Fax:  715-362-1166
email:[EMAIL PROTECTED]


- Forwarded by Mark E Kubiske/NRS/USDAFS on 04/24/2007 09:03 AM -
   
 "David M. 
 Lawrence" 
 <[EMAIL PROTECTED]>   To 
 Sent by:  ECOLOG-L@LISTSERV.UMD.EDU   
 "Ecologicalcc 
 Society of
 America: grants,  Subject 
 jobs, news"   Re: Fwd: Global Warming Swindle 
 <[EMAIL PROTECTED] 
 V.UMD.EDU>
   
   
 04/23/2007 09:17  
 AM
   
   
 Please respond to 
 "David M. 
 Lawrence" 
 <[EMAIL PROTECTED]>  
   
   




The take-home lesson is to be careful whom you talk to and be careful what
you say to them.  Someone requests an interview, practice due diligence.
If
you've never heard of them before, check them out.  Make sure they are
legitimate journalists.  Ask if they are members of organizations like the
National Association of Science Writers, the Society of Environmental
Journalists, the Society of Professional Journalists, etc.

I work as both a journalist and a scientist.  As a journalist, I would
never
offer anyone such an agreement as proposed.  As a scientist, I would never
request such an agreement.

The role of the journalist is supposed to to be an independent voice -- a
skeptical filter for the public.  Journalists are not supposed to be
mouthpieces for institutions, corporations, celebrities -- even scientists.

I don't think any reputable scientist would want to give up intellectual
control over his research.  Why would a scientist ask a journalist to give
up editorial control of his reporting?

Dave

--
 David M. Lawrence| Home:  (804) 559-9786
 7471 Brook Way Court | Fax:   (804) 559-9787
 Mechanicsville, VA 23111 | Email: [EMAIL PROTECTED]
 USA  | http:  http://fuzzo.com
--

"We have met the enemy and he is us."  -- Pogo

"No trespassing
 4/17 of a haiku"  --  Richard Brauti

FW: Importing preserved arthropods

2007-04-24 Thread O'Mara, Maureen
Dear List,

I am sending this response to all in case the information is helpful in
some way for others.  It appears the biggest challenge in importing
preserved specimens is with the airlines and their safety regulations
regarding flammable material.  The other challenge is the permitting
system in Costa Rica.

Mo

-Original Message-
From: Jaronski, Stefan 
Sent: Monday, April 23, 2007 5:17 PM
To: O'Mara, Maureen
Subject: FW: Importing preserved arthropods

Hi Mo,  Am copying you on my consultant's response to Michel. Ugly ugly 

-Original Message-
From: Furth, David [mailto:[EMAIL PROTECTED] 
Sent: Monday, April 23, 2007 4:54 PM
To: [EMAIL PROTECTED]
Cc: Jaronski, Stefan
Subject: RE: Importing preserved arthropods

First of all for Costa Rica you need to have official Collecting and
Export permits (separate permits) from their government in order to
bring the specimens legally into the USA.  Within 180 days you must file
a 3-177 Declaration with the U.S. Fish & Wildlife Service at your port
of entry.

According to International Air Transport Association (IATA) regulations
you cannot bring 70% ethanol on board airplanes.  The best thing to do
is to drain off the ethanol just before returning and use some other
non-hazardous/non-dangerous fluid like propylene glycol (OK for DNA
work), glycerin, etc.  The other option is to have them shipped in
ethanol by a trained/qualified person at an institution using proper
packaging, sealing the separate containers (not over 30ml each), and not
over 0.5 liters per package, properly labeled with a red/white Dangerous
Goods label, etc., i.e., also following IATA regulations.

APHIS permitting is primarily for importation of live specimens.  When
you enter the USA the US Customs Declaration will ask about products you
are importing and you should check the box that says ". wildlife
products."  Then CBP (US Customs) may divert you to USDA/APHIS/Homeland
Security for further questions and inspection.  Someone may also ask you
for copies of your permits and even the 3-177 Declaration, even though
you really do not have to file it then, so get one on line from
http://www.fws.gov/le/ImpExp/faqs.htm 

I hope this answers your questions.  Feel free to send this to the ESA
listserve, if you think it will be helpful.

**
David G. Furth, Ph.D.
Department of Entomology
MRC 165, P.O. Box 37012
National Museum of Natural History
Smithsonian Institution
Washington, D. C. 20013-7012  USA
Phone: 202-633-0990
Fax: 202-786-2894
Email: [EMAIL PROTECTED]
Website: www.entomology.si.edu 

-Original Message-
From: Jaronski, Stefan [mailto:[EMAIL PROTECTED] 
Sent: Monday, April 23, 2007 4:50 PM
To: Furth, David
Subject: FW: Importing preserved arthropods

David, One of our folks just got this in. I thought you might be able to
quickly and accurately answer Michel's question

Stefan

-Original Message-
From: O'Mara, Maureen 
Sent: Monday, April 23, 2007 2:46 PM
To: Jaronski, Stefan
Subject: FW: Importing preserved arthropods

Hi Stefan,

This came across Ecological Soc. Of A. listserve.  Thought you might
know the answer to this since you deal with APHIS so much!  Maybe even a
suggestion on who or what department to contact?

Mo

-Original Message-
From: Ecological Society of America: grants, jobs, news
[mailto:[EMAIL PROTECTED] On Behalf Of Michel, Nicole L
Sent: Monday, April 23, 2007 2:30 PM
To: ECOLOG-L@LISTSERV.UMD.EDU
Subject: Importing preserved arthropods

Hi ECOLOG'ers and NEOORN'ers,

=20

Apologies for cross-posting!

=20

I have a question regarding USDA-APHIS import permit requirements.  I
will be collecting leaf-litter arthropods (spiders, beetles, ants,
millipedes, etc.) in Costa Rica and need to bring preserved (in 70%
ethanol) specimens back to the States.  I've checked the USDA's website
and have contacted numerous people in numerous offices and still haven't
yet been able to determine whether or not arthropods count as an
"animal" under their definitions. =20

=20

Does anyone out there have experience with bringing preserved arthropods
back from Central America?  I also have heard that there are strict
restrictions on the amounts of ethanol in checked bags, but haven't yet
been able to find out what those restrictions are.

=20

Thanks for your assistance!

=20

Cheers,

Nicole Michel

=20

=20

=20

**
Nicole Michel
Dept. of Ecology and Evolutionary Biology
310 Dinwiddie Hall
Tulane University
New Orleans, LA 70118

**

=20


new essay suggests Sierra Club is getting lost in "green" consumerism

2007-04-24 Thread stan moore
the fascinating article can be linked to at:

http://www.zmag.org/content/showarticle.cfm?SectionID=56&ItemID=12636


I have noticed, as I am sure that other have, that corporations have taken 
on a green mantle, often completely undeserved.  But even mainstream 
environmental organizations, such as the Sierra Club, in their new plan, are 
taking the "shallow green" instead of the "deep green" approach as described 
in this article.  Consumerism is promoted over "deprivation".  Biomass is 
seen as an energy solution with no specified concern or mention of ecology.  
Etc., etc., etc.

This seems an alternative form of "business as usual" and I don't believe we 
can make the urgently-needed degree of progress on our fundamental problems 
with anything other than a radical transformation of our society, including 
its fundamental mindset.


Stan Moore San Geronimo, CA  [EMAIL PROTECTED]

_
Need a break? Find your escape route with Live Search Maps. 
http://maps.live.com/?icid=hmtag3


The Great Global Warming Swindle

2007-04-24 Thread Andrew Park
Dear Ecologgers

(Heaves a Sigh).

I have seen the GGWS at my University, which turns out to be the
University of Winnipeg, located in friendly Manitoba, Canada.

As it turns out, my august institution makes an appearance in this
"documentary".  At several points, you will see a fellow called Tim
Ball, who is one of Canada's self-styled global warming nay-sayers.
The caption that appears beneath his talking head is "Tim Ball,
Department of Climatology, University of Winnipeg".

Now, you may use this caption as an indicator of the veracity of the
rest of the documentary, since (1) there is NO "department of
Climatology" at the University of Winnipeg, (2) Tim Ball has not been
a professor there for a rather long time, and (3) when he was a
professor there he is on record as telling students that there was no
such thing as the greenhouse effect (I have this straight from the
horse's mouth).


The documentary is similarly populated with "experts" who probably had
there credentials checked to the same standard as those of Mr Ball,
who, incidentally, published a grand total of 6 papers in a long
career, none of which dealt with the subject of human-induced climate
change.


The Director, Martin Durkin, is notorious for his controversial and
poorly researched contrarian positions.  Among his previous works, he
produced a program in which he claimed that ilicone breast implants,
were beneficial to the women who used them, reducing the risk of
breast cancer!!

The miracel is that such programs ever get televised, a sad testament
to the decline in critical thinking these days.

As for the University of Winnipeg; we are not Harvard or Oxford by a
long shot, but I and my colleagues do object to having our name used
in badly researched diatribes masquerading as serious documentaries.

For a critique of the GGWS by the eminent climatologist Sir John
Houghton, see
http://www.jri.org.uk/index.php?option=com_content&task=view&id=137&Itemid=83

All the Best,

Andy Park (University of Winnipeg)





- End forwarded message -


Summer Research Assistant: Invasive Aquatic Plants

2007-04-24 Thread Michelle D Marko
Department of Soil and Water, New Haven, CT
Position Announcement, Summer Research Assistant
Biological Control of the Invasive Aquatic Plant Eurasian Watermilfoil
 
A Summer Research Assistant position is available at The Connecticut 
Agricultural Experiment Station to assist in the collection of invasive 
aquatic plants, as well as in laboratory and greenhouse studies focusing on 
the Biological Control of the Invasive Aquatic Plant Eurasian Watermilfoil. 
Background (course work) and field experience in biology and/or ecology are 
desirable. Must be able to swim and willing to snorkel in CT lakes. Duties 
will include assisting scientists in the establishment and maintenance 
weevil populations in greenhouses, collection and processing of Eurasian 
Watermilfoil vegetation samples from CT Lakes for chemical analysis, 
outdoor experiments in integrated pest management and laboratory-based 
identification and analysis of collected vegetation for invertebrate 
species.

The position is available from May 1 through October 31, 2007. The hours of 
work are 8:30-4:30, M-F (35 hr/wk) and the salary is $10.00/hr.

Interested candidates should send an application to Dr. Jason White, 
Department of Soil & Water, The Connecticut Agricultural Experiment 
Station, 123 Huntington Street, New Haven, CT 06504. Phone 203-974-8523, 
Fax 203-974-8502, E-mail: [EMAIL PROTECTED]

Follow this link for complete position information. 
http://www.caes.state.ct.us/JobOpportunities/job.htm

Notice of Non-Discrimination: The Connecticut Agricultural Experiment 
Station is an Equal Opportunity /Affirmative Action Employer. Minorities 
and women are encouraged to apply.


JOB: Supervisory Fish Ecologist in Beaufort, NC

2007-04-24 Thread Kyle Shertzer
The person in this position will serve as Branch Chief for the new 
Fisheries Ecosystem Branch of NOAA Fisheries Service in Beaufort, NC.
*
Announcement Number*:   *NMFS-SEFSC-2007-0014*
*Position:*  Supervisory Research Fishery Biologist/Supervisory 
Ecologist, ZP-0482/0408-IV
*Location:* Beaufort, NC
*Open:  *  _Monday, April 16, 2007_
*Close:*   _ Friday,  May 4, 2007_
*Point of Contact:*  Marina N. Derksema (206) 526-6517 or 
[EMAIL PROTECTED]  

You can preview a copy of the announcement at
https://jobs1.quickhire.com/scripts/doc.exe/preview  Enter the vacancy 
number and click on "Announcement and Questions."

Applicants can view announcements and apply online at the USAJOBS web site:
all federal jobs -   http://www.usajobs.opm.gov/
only DOC jobs -   http://jobsearch.usajobs.opm.gov/a9cm.asp


**Major Duties:
The incumbent supervises the Fisheries Ecosystem Branch, current 
programs primarily include fish ecology and life history; conducts 
original research to advance the field of fishery ecosystems for the 
ultimate purpose of conducting integrated ecosystem assessments; 
administers budget, manages Branch personnel, ensures safety and 
environmental compliance; Leads Fisheries Ecosystem Branch at 
Beaufort.

The incumbent formulates and conducts a research program of 
considerable scope and complexity under general guidance on policy, 
resources planning, producing reports or publications; spends 25% or 
more of time providing technical supervision over a significant 
workload of mission-supporting scientific and other work.  The work 
involves theoretical, experimental, and field investigations or 
simulation of experiments and conditions to develop principles, 
criteria, methods, quantitative models, and a body of data of 
general applicability for use by others for improving the 
understanding of fishery ecosystems and conducting integrated 
ecosystem assessments.**


**Who May Apply:
All qualified U.S. citizens, and current Federal employees serving 
under a career or career-conditional appointment in the competitive 
service, former Federal employees with reinstatement rights, 
CTAP/ICTAP eligibles, and applicants eligible under special 
authorities.  Veterans who are preference eligible or who have been 
separated from the armed forces under honorable conditions after 3 
years or more of continuous active service may apply under the 
Veterans Employment Opportunity Act (VEOA).**


Re: Fwd: Global Warming Swindle

2007-04-24 Thread joseph gathman
Dave asked:
> I don't think any reputable scientist would want to
> give up intellectual
> control over his research.  Why would a scientist
> ask a journalist to give
> up editorial control of his reporting?

I was being a bit facetious, hence the last sentence. 
But given the often-appalling performance of reporters
regarding science (and quite a few other things in
recent years), I'd be disinclined to talk to most of
them at this point.  I've seen several people's words,
my own included, misquoted, misinterpreted, and
otherwise mangled, in print.

If they are specialists in science reporting or come
from a science-related journal/magazine, I'd be
considerably more likely to cooperate.

Joe


__
Do You Yahoo!?
Tired of spam?  Yahoo! Mail has the best spam protection around 
http://mail.yahoo.com 


Re: nonparametric repeated measures

2007-04-24 Thread David Inouye
How about to transform the data using LOG?

jiazy
2007-04-24
[EMAIL PROTECTED]

In response to:
I'm working with some percent cover data from plots that have been measured
annually for the past five years.  In several plots and during some years
there is little to no vegetation coverage, so the data are heavily skewed;
the common transformations (log, square root) haven't worked.  Is there a
way to do repeated measures analyses on non-normal data?  Is PROC MIXED
robust enough to handle nonparametric data?  Thanks for your help!

Lucy


On the Bonferroni adustment of correlograms

2007-04-24 Thread Alexandre Souza
Dear friends that work on spatial Ecology,

I am proceeding with the analysis of a dataset on the spatial structure of 
canopy openness in the southern Brazilian mixed conifer-hardwood forests, and 
would like to ask your opinion on a rather simple matter on which I have doubts.

I have six one-hectare plots subdivided in 100 10 x 10 m plots each. In the 
centre of each subplot we took a hemispherical photograh and estimated canopy 
openness. In Legendre and Fortin (1989) it is said that before examining each 
significant value in a correlogram, we must first perfom a global test, since 
several tests are done at the same time, for a given overall significance 
level. The global test is made by checking whether the correlogram contains at 
least one value which is significant after a Bonferroni correction.

So I ask:

1)When we have more than one correlogram (say, six) between Moran's I and 
distance classes, should we adjust the significance level to account for the 
fact that we are performing not only, e.g., ten significance tests within each 
correlogram (which are the distance classes), but also more than one 
correlogram? If yes, then the Bonferroni correction should be the significance 
level divided by which value? 60 (6 correlograms x 10 classes within each 
correlogram)? I guess this means that if we have a really large data set almost 
nothing would be significant!

   I could not find this particular information in Dale et al. (2002) nor 
in Legendre and Legendre (1998), although I suspect that it is present in this 
last reference, because it is rather large and my search has not been 
exhaustive.

2)   One of the six plots has been hit by a microtornado a few years ago, which 
damaged a rather small area, 0,25 ha. So in this area we have only 25 10 x 10 m 
plots. Again, according with Legendre and Fortin (1989) I should not perform 
the spatial autocorrelation analysis mentioned above, because there would be 
too few pairs of localities, not enough to produce significant results. I ask: 
is this true even if we divide the distance classes in a irregular manner, so 
that they have equal frequencies of numbers of pairs of points? If this would 
allow "to compute valid coefficients even in the right-hand part of the 
correlogram", it may allow valid coefficients in the middle of a correlogram 
with fewer classes?

 Dear friends, thank you very much for your attention!

 Sincerely,
 
 Alexandre

Dr. Alexandre F. Souza 
Programa de Pós-Graduação em Biologia: Diversidade e Manejo da Vida Silvestre
Universidade do Vale do Rio dos Sinos (UNISINOS)
Av. UNISINOS 950 - C.P. 275, São Leopoldo 93022-000, RS  - Brasil
Telefone: (051)3590-8477 ramal 1263
Skype: alexfadigas
[EMAIL PROTECTED]
http://www.unisinos.br/laboratorios/lecopop


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Esta mensagem foi verificada pelo sistema de antivírus e
 acredita-se estar livre de perigo.


Re: Global Warming Swindle

2007-04-24 Thread Dmitry Musolin
one more doc. This time it is an on-line lecture Dr.Merchant:

http://video.google.com/videoplay?docid=-1656640542976216573


And the best part: I actually did not notice in the original
documentary that when they show a very convincing graph on the Sun
black spot activity vs. Earth Temperature, they CUT it at apr. 1975!
Dr.Merchant shows what happened then: two lines do not fit! (it is
minute 37 of this lecture).



Sincerely yours,

Dmitry.
---
Dmitry Musolin, PhD
Lab. of Insect Ecology, Graduate School of Agriculture
Kyoto University, Kyoto 606-8502, Japan.
Tel./FAX: +81-75-753-6474; Tel.: +81-75-753-6136
E-mail: [EMAIL PROTECTED]
www.ndsu.nodak.edu/ndsu/rider/Pentatomoidea/Researchers/Musolin_Dmitry.htm


Interested in studying herbivorous insect diversity with latitude

2007-04-24 Thread Jonathan Adams
Everyone,

I am interested in studying how the diversity of herbivorous insects
differs with latitude on a particular species of host tree, between
the northern and southern ends of its range. My hypothesis would be
that a tree would be attacked by more species in the warmer end of the
range. It might also have a greater total biomass of insects per unit
area of leaves.

I'd like to test this by sampling low-hanging sun branches on forest
edges at a range of sites i've identified in northern Florida, vs New
Jersey/New York State. I have two questions

1) Does my rough and ready method for harvesting insects sound any good: i
want to spray insecticide over several low branches, holding a sheet
underneath and catching the insects that drop off

2) Is there anyone in northern Florida (or a similar latitude)who might be
interested in visiting my sites (which are marked out on maps and
accessible along roadsides) to harvest the insects, while I do the same at
a phenologically equivalent time of year here in the north-east?



Jonathan Adams


Re: Fwd: Global Warming Swindle

2007-04-24 Thread Warren W. Aney
If you are a scientist and you are going to be talking to the media, you
should first read "A Scientist's Guide to Talking With the Media" by Hayes
and Grossman (2006, Rutgers University Press).  On page 77 this book talks
about reviewing copy before it is printed (sometimes you can and sometimes
you can't, but don't make it a precondition).

Warren Aney
(503)246-8613

-Original Message-
From: Ecological Society of America: grants, jobs, news
[mailto:[EMAIL PROTECTED] Behalf Of David M. Lawrence
Sent: Monday, 23 April, 2007 07:17
To: ECOLOG-L@LISTSERV.UMD.EDU
Subject: Re: Fwd: Global Warming Swindle


The take-home lesson is to be careful whom you talk to and be careful what
you say to them.  Someone requests an interview, practice due diligence.  If
you've never heard of them before, check them out.  Make sure they are
legitimate journalists.  Ask if they are members of organizations like the
National Association of Science Writers, the Society of Environmental
Journalists, the Society of Professional Journalists, etc.

I work as both a journalist and a scientist.  As a journalist, I would never
offer anyone such an agreement as proposed.  As a scientist, I would never
request such an agreement.

The role of the journalist is supposed to to be an independent voice -- a
skeptical filter for the public.  Journalists are not supposed to be
mouthpieces for institutions, corporations, celebrities -- even scientists.

I don't think any reputable scientist would want to give up intellectual
control over his research.  Why would a scientist ask a journalist to give
up editorial control of his reporting?

Dave

--
 David M. Lawrence| Home:  (804) 559-9786
 7471 Brook Way Court | Fax:   (804) 559-9787
 Mechanicsville, VA 23111 | Email: [EMAIL PROTECTED]
 USA  | http:  http://fuzzo.com
--

"We have met the enemy and he is us."  -- Pogo

"No trespassing
 4/17 of a haiku"  --  Richard Brautigan

-Original Message-
From: Ecological Society of America: grants, jobs, news
[mailto:[EMAIL PROTECTED] On Behalf Of joseph gathman
Sent: Monday, April 23, 2007 7:47 AM
To: ECOLOG-L@LISTSERV.UMD.EDU
Subject: Re: Fwd: Global Warming Swindle



On a different note, the lesson to learn from the
scientist who was misquoted seems to be:  don't talk
to the media unless they give you, in writing, the
right of approval or rejection of what they do with
your words.  Of course, they probably won't do that...

Joe