Re: [ECOLOG-L] Sarewitz on Systematic Error

2012-05-17 Thread John Gerlach
Sorry Wayne I disagree with you. I've read the Kune-type discussions for years 
and while I don't disagree with the fundamental premise something different is 
affecting the way science is done now. There is a lot of current psychological 
research showing how context radically affects human perception and decision 
making. The context here is being driven by universities, agencies, etc. For an 
popular and very enlightening description read Blink by Malcolm Gladwell. I 
highly recommend all of his books for insights on how humans make decisions, 
why 
success is mostly a matter of luck, why institutions fail, and what drives 
fundamental change in human systems. I'm not going to get into debating the 
academic niceties of whether this is a Kune-type phenomenon or not or how to 
change the system - see Gladwell's Tipping Point for ideas. I think that the 
frustration with the publication process that has been expressed on this list 
often along with the life-work balance issues that were recently raised are all 
part of the same problem.

John Gerlach






From: Wayne Tyson 
To: ECOLOG-L@LISTSERV.UMD.EDU
Sent: Thu, May 17, 2012 5:03:42 AM
Subject: Re: [ECOLOG-L] Sarewitz on Systematic Error

AS USUAL, I must violently disagree with Chew--on the contrary, everyone should 
TAKE HOURS to study this article AND the responses it spawned, as well as the 
key link 
http://www.plosmedicine.org/article/info:doi/10.1371/journal.pmed.0020124 .

I nominate Chew's post as the most important of the year.

WT

PS: I wonder how many heads will end up on pikes as a result of daring to 
comment on this?

This is (in my view) a key comment from the website:

2012-05-10 11:24 AM
Report this comment | #42493
David Tyler said:"How can we explain such pervasive bias? Like a magnetic field 
that pulls iron filings into alignment, a powerful cultural belief is aligning 
multiple sources of scientific bias in the same direction."

Surely the analysis of Thomas Kuhn, helpfully articulated in a recent review by 
David Kaiser
(Nature, 12 April 2012, 
http://www.nature.com/nature/journal/v484/n7393/full/484164a.html) is relevant 
here. Most researchers are practicing "normal science" and are building on a 
consensual paradigm. They have a model of incremental progress and they think 
deductively that all "positives" must advance the paradigm. They are not 
thinking about false positives. This is the real "cultural belief" that steers 
the way research is done.
Somehow, we need to avoid appeals to scientific "consensus" that closes down or 
confines discourse. Science thrives when the appeal is not to consensus but to 
evidence. Why can't the "multiple working hypotheses" approach be more widely 
adopted?



From
- Original Message - From: "Matt Chew" 
To: 
Sent: Tuesday, May 15, 2012 8:30 AM
Subject: [ECOLOG-L] Sarewitz on Systematic Error


> Everyone should take a minute to read this Nature 'world view' piece.
>http://www.nature.com/news/beware-the-creeping-cracks-of-bias-1.10600?WT.ec_id=NEWS-20120515
>5
> 
> Matthew K Chew
> Assistant Research Professor
> Arizona State University School of Life Sciences
> 
> ASU Center for Biology & Society
> PO Box 873301
> Tempe, AZ 85287-3301 USA
> Tel 480.965.8422
> Fax 480.965.8330
> mc...@asu.edu or anek...@gmail.com
> http://cbs.asu.edu/people/profiles/chew.php
> http://asu.academia.edu/MattChew
> 
> 
> -
> No virus found in this message.
> Checked by AVG - www.avg.com
> Version: 10.0.1424 / Virus Database: 2425/5000 - Release Date: 05/15/12
> 


Re: [ECOLOG-L] Sarewitz on Systematic Error

2012-05-17 Thread Wayne Tyson
AS USUAL, I must violently disagree with Chew--on the contrary, everyone 
should TAKE HOURS to study this article AND the responses it spawned, as 
well as the key link 
http://www.plosmedicine.org/article/info:doi/10.1371/journal.pmed.0020124 .


I nominate Chew's post as the most important of the year.

WT

PS: I wonder how many heads will end up on pikes as a result of daring to 
comment on this?


This is (in my view) a key comment from the website:

2012-05-10 11:24 AM
Report this comment | #42493
 David Tyler said:"How can we explain such pervasive bias? Like a magnetic 
field that pulls iron filings into alignment, a powerful cultural belief is 
aligning multiple sources of scientific bias in the same direction."


 Surely the analysis of Thomas Kuhn, helpfully articulated in a recent 
review by David Kaiser
 (Nature, 12 April 2012, 
http://www.nature.com/nature/journal/v484/n7393/full/484164a.html) is 
relevant here. Most researchers are practicing "normal science" and are 
building on a consensual paradigm. They have a model of incremental progress 
and they think deductively that all "positives" must advance the paradigm. 
They are not thinking about false positives. This is the real "cultural 
belief" that steers the way research is done.
 Somehow, we need to avoid appeals to scientific "consensus" that closes 
down or confines discourse. Science thrives when the appeal is not to 
consensus but to evidence. Why can't the "multiple working hypotheses" 
approach be more widely adopted?




From
- Original Message - 
From: "Matt Chew" 

To: 
Sent: Tuesday, May 15, 2012 8:30 AM
Subject: [ECOLOG-L] Sarewitz on Systematic Error



Everyone should take a minute to read this Nature 'world view' piece.
http://www.nature.com/news/beware-the-creeping-cracks-of-bias-1.10600?WT.ec_id=NEWS-20120515

Matthew K Chew
Assistant Research Professor
Arizona State University School of Life Sciences

ASU Center for Biology & Society
PO Box 873301
Tempe, AZ 85287-3301 USA
Tel 480.965.8422
Fax 480.965.8330
mc...@asu.edu or anek...@gmail.com
http://cbs.asu.edu/people/profiles/chew.php
http://asu.academia.edu/MattChew


-
No virus found in this message.
Checked by AVG - www.avg.com
Version: 10.0.1424 / Virus Database: 2425/5000 - Release Date: 05/15/12



Re: [ECOLOG-L] Sarewitz on Systematic Error

2012-05-16 Thread Jane Shevtsov
On Tue, May 15, 2012 at 7:06 PM, malcolm McCallum
 wrote:
> This entire commentary is actually a criticism of our lack of
> replication by multiple researchers.  When a study comes out, it needs
> to be reinvestigated by others, not just accepted.  Take a landmark
> paper, hand it to an MS student and have them redo the study and then
> add a follow up twist.  This is simply not done enough today.

I wonder if this is related to the apparent decline in the numbers of
MS students, as opposed to PhD students, from whom more originality is
expected. I was discouraged from pursuing an MS and ended up straight
out of undergrad, like many grad students in my program. (We had more
PhD students than MS students.) This worked out well for me, but I
wonder about the larger consequences.

-- 
-
Jane Shevtsov, Ph.D.
Mathematical Biology Curriculum Writer, UCLA
co-founder, www.worldbeyondborders.org

"In the long run, education intended to produce a molecular
geneticist, a systems ecologist, or an immunologist is inferior, both
for the individual and for society, than that intended to produce a
broadly educated person who has also written a dissertation." --John
Janovy, Jr., "On Becoming a Biologist"


Re: [ECOLOG-L] Sarewitz on Systematic Error

2012-05-16 Thread malcolm McCallum
Hard to believe they let this statement make it into publication...

"A biased scientific result is no different from a useless one.
Neither can be turned into a real-world application."

Especially after just a few lines earlier they state...

"Bias is an inescapable element of research, especially in fields such
as biomedicine that strive to isolate cause–effect relations in
complex systems in which relevant variables and phenomena can never be
fully identified or characterized. "

In other words, the anti-research/anti-academic/anti-intellectual
crowd can now grab these two sentences, misquote them and indicate
that a paper in science just stated that RESEARCH IS A WASTE OF TIME
BECAUSE IT NEVER HAS ANY REAL WORLD APPLICATION

It would be great if a paper criticizing errors in others' work
actually read their work carefully! :)
(that is a tongue in cheek comment by the way).

This entire commentary is actually a criticism of our lack of
replication by multiple researchers.  When a study comes out, it needs
to be reinvestigated by others, not just accepted.  Take a landmark
paper, hand it to an MS student and have them redo the study and then
add a follow up twist.  This is simply not done enough today.

On Tue, May 15, 2012 at 10:30 AM, Matt Chew  wrote:
> Everyone should take a minute to read this Nature 'world view' piece.
> http://www.nature.com/news/beware-the-creeping-cracks-of-bias-1.10600?WT.ec_id=NEWS-20120515
>
> Matthew K Chew
> Assistant Research Professor
> Arizona State University School of Life Sciences
>
> ASU Center for Biology & Society
> PO Box 873301
> Tempe, AZ 85287-3301 USA
> Tel 480.965.8422
> Fax 480.965.8330
> mc...@asu.edu or anek...@gmail.com
> http://cbs.asu.edu/people/profiles/chew.php
> http://asu.academia.edu/MattChew



-- 
Malcolm L. McCallum
Department of Molecular Biology and Biochemistry
School of Biological Sciences
University of Missouri at Kansas City

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[ECOLOG-L] Sarewitz on Systematic Error

2012-05-15 Thread Matt Chew
Everyone should take a minute to read this Nature 'world view' piece.
http://www.nature.com/news/beware-the-creeping-cracks-of-bias-1.10600?WT.ec_id=NEWS-20120515

Matthew K Chew
Assistant Research Professor
Arizona State University School of Life Sciences

ASU Center for Biology & Society
PO Box 873301
Tempe, AZ 85287-3301 USA
Tel 480.965.8422
Fax 480.965.8330
mc...@asu.edu or anek...@gmail.com
http://cbs.asu.edu/people/profiles/chew.php
http://asu.academia.edu/MattChew