[Orgmode] [OT] what about asymptote ?

2010-06-13 Thread Nicolas Goaziou
87eigde28n@gmail.com
87d3vw8shu.wl%ucec...@ucl.ac.uk
87631o8ebj@gmail.com
87wru4uhux.wl%ucec...@ucl.ac.uk
aanlktikoyclhdvuisb11vymrceivo9hx3n3rdrsow...@mail.gmail.com
User-Agent: Wanderlust/2.15.9 (Almost Unreal) Emacs/23.2 Mule/6.0 
(HANACHIRUSATO)

Hello,

While I'm at it, I'd like to suggest asymptote as a neat tool to draw
all those graphs.

Here are two examples illustrating it (admittedly not so well for the
surface, but I explain why in my comments) :

#+begin_src asymptote
import graph3;
size(7cm,0);

currentprojection=orthographic(-4,-2,3);

// define function f(z), where z ( z.x , z.y )
real f(pair z) { return sin(z.x) + sin(z.y); }

// Drawing meshes (pen for surface is nullpen)
draw(surface(f,(-4,-4),(4,4),nx=30),nullpen,meshpen=red,nolight);

// Dumb axis but my asymptote version is too old for something
// more complex
xaxis3();
yaxis3();
zaxis3();
#+end_src

#+begin_src asymptote :file graph-asy-polar.pdf
import graph;
size(7cm,0);

// defining function and its graph
real f(real t) {return sqrt(2)/2-cos(3t);}
path Cf=polargraph(f,0,2pi,n=1440,operator ..)--cycle;

// drawing graph
draw(Cf,.8bp+red);

// axis and units
xaxis($x$);
yaxis($y$);
draw((0,0)--(1,0),.8bp+blue,Arrow());
draw((0,0)--(0,1),.8bp+blue,Arrow());
#+end_src

--
Nicolas

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Re: [Orgmode] sup-mail link

2010-06-13 Thread David Maus
Daniel Goldin wrote:
Anybody know of a way to link to a sup-mail email?

Integration with sup is not (yet?) supported by Org mode.  What you
basically need is (a) a way to create a link from within sup and (b) a
way to remotely open a message in sup.

Maybe this tutorial about integrating Org mode and Mutt can be
a starting point:

Stefano Zacchiroli
remember Mutt's mail in Org-mode and jump back to them
http://upsilon.cc/~zack/blog/posts/2010/02/integrating_Mutt_with_Org-mode/

HTH
  -- David

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Re: [Orgmode] Rescheduling an item works properly only if SCHEDULED is after the heading

2010-06-13 Thread David Maus
Tom wrote:
I sometimes move the SCHEDULED keyword after textual content of a
heading, because for me the content is more important to see than
the keyword which is a technical detail of org implementation.

The problem is if I use org-schedule on such a heading to
reschedule the task then it inserts a new SCHEDULED keyword after
the heading instead of modifying the existing keyword after the
text content.

Isn't it a bug? Shouldn't org always modify the existing keyword
like it does when the keyword is immediately after the heading?

I can reproduce this and yes, this looks like a bug or at least an
inconsistency.

  -- David

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Re: [Orgmode] Could inline footnotes be made to work with latex commands that have arguments?

2010-06-13 Thread David Maus

Scot Becker wrote:

If I put a LaTeX citation command inside one of org's inline
footnotes, no problem, thus:

Lorem ipsum dolor sit amet,\footnote{\cite{rowe_acts_2007} }
consectetur adipisicing elit,

But if I need an optional argument, no dice.  This:

 ex ea commodo consequat.[fn:: \cite[56]{fitzmyer_one_2007}] Duis aute irure 
dolor

exports to LaTeX like this:

ex ea commodo consequat.[fn:: \cite[56]{fitzmyer_one_2007}] Duis aute irure 
dolor

(i.e. there is no \footnote{} macro created)

For consistency in my markup, I would rather use org's inline
footnotes for citations like this (which sometimes number several
inside a footnote).   If I can't, I'd just go ahead and use LaTeX
\footnote{} macros right in my org files.

Is the present behaviour likely to be fixable?  Or should I just
write my footnotes as LaTeX \footnotes{}?

This does not look like easy to fix: It are the square brackets of the
\cite command that prevent Org mode from recognizing the inline
footnote.  

You could try to work with a LaTeX hack, something along:

,
| \newcommand{\mycite}[2]{\cite[#1]{#2}}
`

This would provide the macro \mycite with two arguments given in
curly brackets that is expanded to the \cite sequence.

HTH
  -- David

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Re: [Orgmode] [patch] overprotective begin/end during latex export

2010-06-13 Thread Nicolas Goaziou
 Eric Schulte writes:

Hello,

 I've run across the following bug a couple of times before, but have
 finally had a chance to really distill it.  When exporting the following

 --8---cut here---start-8---
 #+TITLE: latex environments bug

 there is markup /out here/

 #+LaTeX: \begin{enumerate}

 but *no markup* in here

 #+LaTeX: \end{enumerate}

 and markup _down here_ as well
 --8---cut here---end---8---

 everything works as expected, except that the

   but *no markup* in here

 line is *not* exported to LaTeX, but is rather copied verbatim into the
 final LaTeX file.

It is because org-latex.el doesn't check if \begin{enumerate} is
already protected or not. Thus, it treats it as if it was some plain
LaTeX code inside the file.

In other words,

#+LaTeX: \begin{enumerate}
*bold*
#+LaTeX: \end{enumerate}

is the same as

\begin{enumerate}
*bold*
\end{enumerate}

In this case, org-latex protects everything between \begin and \end,
making it impossible to apply modifications to the text in-between.

With the following patch, org-latex will not protect an environment
coming from a #+LaTeX: instruction.

Btw, a bug I described some day ago (about org-latex badly exporting
lists when an equation spans across two lines) is also about
over protection. I have a workaround, but I still don't understand
why protection is needed for lists.

HTH,

-- 
Nicolas



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Re: [Orgmode] sup-mail link

2010-06-13 Thread Daniel Goldin
Unfortunately, I'm not a programmer, just a cut-and-paster. But I love
org and I love sup -- and I thought it would be nice to get the two
together.

d.


Excerpts from David Maus's message of Sun Jun 13 06:29:49 -0700 2010:
 Daniel Goldin wrote:
 Anybody know of a way to link to a sup-mail email?
 
 Integration with sup is not (yet?) supported by Org mode.  What you
 basically need is (a) a way to create a link from within sup and (b) a
 way to remotely open a message in sup.
 
 Maybe this tutorial about integrating Org mode and Mutt can be
 a starting point:
 
 Stefano Zacchiroli
 remember Mutt's mail in Org-mode and jump back to them
 http://upsilon.cc/~zack/blog/posts/2010/02/integrating_Mutt_with_Org-mode/
 
 HTH
   -- David
 
-- 
Daniel Goldin 
213.926.1960

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[Orgmode] Org mode issue file

2010-06-13 Thread David Maus
Hello all,

The Org mode issue file located at

http://orgmode.org/worg/org-issues.php

was just updated with a explanations about the nomenclature of
keywords and tags, how the recorded issues flow inside the file, and
some remarks on operating on this file collaboratively.

Most notably the issue file is supposed to supersede the old todo
file[1], thus it includes a section with the open development task of
the old todo file.

I've attached a copy of the introduction to the issue and a
preliminary version of a library to operate on the issue file from
withing Gnus and Wanderlust.  Please see the commentary section of
org-issue.el for the functions it provides.

Regards and happy hacking,

  -- David

[1] http://orgmode.org/todo.html
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Description: Binary data
  Open issues with Org mode
  =

Date: 2010-06-13 18:21:25 CEST


Table of Contents
=
Introduction 
Nomenclature 
Document structure and maintenance 
Using this file 


Introduction 
~

This is a simple mailing list based tracker for issues and other
things about Org mode.  It is a replacement of the abandoned todo file
and incorporates it's structure and parts of the nomenclature.  The
purpose of this document is to keep track of issues, i.e. anything
that requires some kind of actions, and other things like
announcements, hacks, feature ideas and the like.

Nomenclature 
=

On this page, TODO keywords are used in the following way:

 *Keyword* Intention

  

-+---
 *NEW* A new issue that is not yet classifed.   

  
 *TODO*A task to be done.  This includes but is not limited to 
answers to user requests, development or documentation tasks.   
   
 *ASSIGNED*Someone started to take care of this task.  A property 
*ASSIGNEE* should provide a hint on who it is.  

 *IDEA*A new idea, I have not yet decided what if anything I 
will do about it.   
 
 *WISH*A wish, probably voiced by someone on  
emacs-orgm...@gnu.org.  This is less than a new idea, more a change in existing 
behavior.   
 *DECLINED*A feature or idea that was declined. Still in the list 
so that people can see it, complain, or still try to convince Carsten to 
implement it.  
 *INCONSISTENCY*   Some behavior in Org-mode that is not as clean and 
consistent as it should be. 

 *BUG* This needs to be fixed, as soon as possible. 

  
 *DONE*Well, done is done.  

  

In addition, tags are used to provide more detailed context
information.  Currently these tags are used in this file:

 *Tag* Context
-+---
 *Babel*   Issue concerning the library of [Babel]  
 *Mobil*   Issue concerning [MobileOrg] 
 *Patch*   A patch is available via Org mode's [Patchwork tracker]  


 [Babel]: http://orgmode.org/worg/org-contrib/babel/index.php
 [MobileOrg]: http://mobileorg.ncogni.to/
 [Patchwork tracker]: 
http://patchwork.newartisans.com/project/org-mode/list/

Document structure and maintenance 
===

New issues hitting the Org mode [mailing list] are recorded on a
(almost) daily basis using a yet to be published library that allows
operating on the issue file from within Wanderlust and (partly) Gnus.

They are first filed to the heading *New Issues*.

In a second step issues beneath this heading are reviewed.  If an
issue triggers a development task it is properly classified (keywords,
tag) and refiled to heading *Development Task*.  If it is already
closed according to the mailing list, it is immediately closed and
moved to *Closed issues*.  If it cannot yet be classified or closed,
it stays where it is.


[mailing list]: http://lists.gnu.org/mailman/listinfo/emacs-orgmode

Using this file 


This file is hosted and published 

Re: [Orgmode] [patch] overprotective begin/end during latex export

2010-06-13 Thread Eric Schulte
Hi Nicolas,

Your patch has been applied, many thanks.

I looked at your previous email, and it's not immediately clear to me
where the problem is either.

Thanks for the quick solution on this issue however -- Eric

Nicolas Goaziou n.goaz...@gmail.com writes:

 Eric Schulte writes:

 Hello,

 I've run across the following bug a couple of times before, but have
 finally had a chance to really distill it.  When exporting the following

 --8---cut here---start-8---
 #+TITLE: latex environments bug

 there is markup /out here/

 #+LaTeX: \begin{enumerate}

 but *no markup* in here

 #+LaTeX: \end{enumerate}

 and markup _down here_ as well
 --8---cut here---end---8---

 everything works as expected, except that the

   but *no markup* in here

 line is *not* exported to LaTeX, but is rather copied verbatim into the
 final LaTeX file.

 It is because org-latex.el doesn't check if \begin{enumerate} is
 already protected or not. Thus, it treats it as if it was some plain
 LaTeX code inside the file.

 In other words,

 #+LaTeX: \begin{enumerate}
 *bold*
 #+LaTeX: \end{enumerate}

 is the same as

 \begin{enumerate}
 *bold*
 \end{enumerate}

 In this case, org-latex protects everything between \begin and \end,
 making it impossible to apply modifications to the text in-between.

 With the following patch, org-latex will not protect an environment
 coming from a #+LaTeX: instruction.

 Btw, a bug I described some day ago (about org-latex badly exporting
 lists when an equation spans across two lines) is also about
 over protection. I have a workaround, but I still don't understand
 why protection is needed for lists.

 HTH,

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Re: [Orgmode] [OT] what about asymptote ?

2010-06-13 Thread Eric Schulte
Hi Nicolas,

I agree asymptote does generate beautiful figures (does it use the same
pgf backend as tikz)?

However my most common graphical need is to display data read in from an
external file or from the command line, which I believe is orthogonal to
the main asymptote functionality.

Best -- Eric

Nicolas Goaziou n.goaz...@gmail.com writes:

 Hello,

 While I'm at it, I'd like to suggest asymptote as a neat tool to draw
 all those graphs.

 Here are two examples illustrating it (admittedly not so well for the
 surface, but I explain why in my comments) :

 #+begin_src asymptote
 import graph3;
 size(7cm,0);

 currentprojection=orthographic(-4,-2,3);

 // define function f(z), where z ( z.x , z.y )
 real f(pair z) { return sin(z.x) + sin(z.y); }

 // Drawing meshes (pen for surface is nullpen)
 draw(surface(f,(-4,-4),(4,4),nx=30),nullpen,meshpen=red,nolight);

 // Dumb axis but my asymptote version is too old for something
 // more complex
 xaxis3();
 yaxis3();
 zaxis3();
 #+end_src

 #+begin_src asymptote :file graph-asy-polar.pdf
 import graph;
 size(7cm,0);

 // defining function and its graph
 real f(real t) {return sqrt(2)/2-cos(3t);}
 path Cf=polargraph(f,0,2pi,n=1440,operator ..)--cycle;

 // drawing graph
 draw(Cf,.8bp+red);

 // axis and units
 xaxis($x$);
 yaxis($y$);
 draw((0,0)--(1,0),.8bp+blue,Arrow());
 draw((0,0)--(0,1),.8bp+blue,Arrow());
 #+end_src

 --
 Nicolas

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Re: [Orgmode] [OT] what about asymptote ?

2010-06-13 Thread Nicolas Goaziou
 Eric Schulte writes:

 I agree asymptote does generate beautiful figures (does it use the same
 pgf backend as tikz)?

Asymptote is unrelated to pgf. IMHO, it is far more powerful (i.e. 3D
functionality) but admittedly less integrated into LaTeX (that's why
org-babel is god sent).

 However my most common graphical need is to display data read in from an
 external file or from the command line, which I believe is orthogonal to
 the main asymptote functionality.

Asymptote can read and write text and XDR files. I'm not sure about the
command line thing.

Regards,

-- Nicolas

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Re: [Orgmode] Meta-grouping properties?

2010-06-13 Thread Sven Bretfeld
Hi David

David Maus dm...@ictsoc.de writes:

 Maybe the tutorial Org-mode tricks for team management by Juan
 Reyero at http://juanreyero.com/article/emacs/org-teams.html can
 provide a solution to the problem?  At least it sounds like a similar
 problem that is described there.

I fear there is no solution for the mentioned idea on that site. In
fact, I had the idea of constructing meta-groups exactly while I was
implementing org-secretary for my needs after I found the mentioned
homepage by chance.

Thanks,

Sven

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[Orgmode] [PATCH] recursively resolve #+INCLUDE files

2010-06-13 Thread Eric Schulte
What do people think of this proposed patch.

I'd like to apply it, but figured I'd run it by the list first

Best -- Eric

,[from the commit message]
| org-exp: now recursively resolve #+INCLUDE: files in a safe way
| 
| * lisp/org-exp.el (org-export-preprocess-string):
|   now using `org-export-handle-include-files-recurse' to resolve
|   included files
| 
|   (org-export-handle-include-files): now returns a list of the
|   included files
| 
|   (org-export-handle-include-files-recurse): recursively calls
|   `org-export-handle-include-files' while checking to see if the
|   process has entered an infinite loop.
`

From 3c3dbd683857041703109e950e0ad85e6fec8a13 Mon Sep 17 00:00:00 2001
From: Eric Schulte schulte.e...@gmail.com
Date: Sun, 13 Jun 2010 15:14:08 -0700
Subject: [PATCH] org-exp: now recursively resolve #+INCLUDE: files in a safe way

* lisp/org-exp.el (org-export-preprocess-string):
  now using `org-export-handle-include-files-recurse' to resolve
  included files

  (org-export-handle-include-files): now returns a list of the
  included files

  (org-export-handle-include-files-recurse): recursively calls
  `org-export-handle-include-files' while checking to see if the
  process has entered an infinite loop.
---
 lisp/org-exp.el |   22 +++---
 1 files changed, 19 insertions(+), 3 deletions(-)

diff --git a/lisp/org-exp.el b/lisp/org-exp.el
index 915e1f5..9428439 100644
--- a/lisp/org-exp.el
+++ b/lisp/org-exp.el
@@ -1032,7 +1032,7 @@ on this string to produce the exported version.
   (untabify (point-min) (point-max))
 
   ;; Handle include files, and call a hook
-  (org-export-handle-include-files)
+  (org-export-handle-include-files-recurse)
   (run-hooks 'org-export-preprocess-after-include-files-hook)
 
   ;; Get rid of archived trees
@@ -1969,7 +1969,7 @@ TYPE must be a string, any of:
 (defun org-export-handle-include-files ()
   Include the contents of include files, with proper formatting.
   (let ((case-fold-search t)
-	params file markup lang start end prefix prefix1 switches)
+	params file markup lang start end prefix prefix1 switches all)
 (goto-char (point-min))
 (while (re-search-forward ^#\\+INCLUDE:?[ \t]+\\(.*\\) nil t)
   (setq params (read (concat ( (match-string 1) )))
@@ -1986,6 +1986,7 @@ TYPE must be a string, any of:
 	  (not (file-exists-p file))
 	  (not (file-readable-p file)))
 	  (insert (format CANNOT INCLUDE FILE %s file))
+	(setq all (cons file all))
 	(when markup
 	  (if (equal (downcase markup) src)
 	  (setq start (format #+begin_src %s %s\n
@@ -1998,7 +1999,22 @@ TYPE must be a string, any of:
 	(insert (org-get-file-contents (expand-file-name file)
    prefix prefix1 markup))
 	(or (bolp) (newline))
-	(insert (or end ))
+	(insert (or end 
+all))
+
+(defun org-export-handle-include-files-recurse ()
+  Recursively include files aborting on circular inclusion.
+  (let ((now (list org-current-export-file)) all)
+(while now
+  (setq all (remove-duplicates (append now all)))
+  (setq now (org-export-handle-include-files))
+  (let ((intersection
+	 (delq nil
+		   (mapcar
+		(lambda (el) (when (member el all) el))
+		now
+	(when (intersection now all)
+	  (error recursive #+INCLUDE: %S intersection))
 
 (defun org-get-file-contents (file optional prefix prefix1 markup)
   Get the contents of FILE and return them as a string.
-- 
1.7.0.4

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Re: [Orgmode] Could inline footnotes be made to work with latex commands that have arguments?

2010-06-13 Thread Scot Becker
Thanks, David, for your response.  I suspected it might not be that easy to
fix.

I hadn't thought of making a custom command which only used mandatory
arguments.  I'll try it out and see if I like it.

Thanks,

Scot


On Sun, Jun 13, 2010 at 3:16 PM, David Maus dm...@ictsoc.de wrote:


 Scot Becker wrote:

 If I put a LaTeX citation command inside one of org's inline
 footnotes, no problem, thus:

 Lorem ipsum dolor sit amet,\footnote{\cite{rowe_acts_2007} }
 consectetur adipisicing elit,

 But if I need an optional argument, no dice.  This:

  ex ea commodo consequat.[fn:: \cite[56]{fitzmyer_one_2007}] Duis aute
 irure dolor

 exports to LaTeX like this:

 ex ea commodo consequat.[fn:: \cite[56]{fitzmyer_one_2007}] Duis aute
 irure dolor

 (i.e. there is no \footnote{} macro created)

 For consistency in my markup, I would rather use org's inline
 footnotes for citations like this (which sometimes number several
 inside a footnote).   If I can't, I'd just go ahead and use LaTeX
 \footnote{} macros right in my org files.

 Is the present behaviour likely to be fixable?  Or should I just
 write my footnotes as LaTeX \footnotes{}?

 This does not look like easy to fix: It are the square brackets of the
 \cite command that prevent Org mode from recognizing the inline
 footnote.

 You could try to work with a LaTeX hack, something along:

 ,
 | \newcommand{\mycite}[2]{\cite[#1]{#2}}
 `

 This would provide the macro \mycite with two arguments given in
 curly brackets that is expanded to the \cite sequence.

 HTH
   -- David

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[Orgmode] Orgnode - a Python module for reading Org-mode files

2010-06-13 Thread Charles Cave
Last year I released a Python module for reading org-mode files
and accessing their contents through a set of methods. 

Several people have asked me about reusing the code and the
licencing of the source code.  I have added an MIT licence and
updated the source code on my web site.

http://members.optusnet.com.au/~charles57/GTD/orgnode.html

I believe there are versions of orgnode available through git
but I haven't looked at these changes.  I would certainly be
interested to include these changes in the version I have
on my web page or to include instructions on how people can
find these.

Suggestions welcome as always,


Charles



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[Orgmode] [PATCH] lists and exportation to latex

2010-06-13 Thread Nicolas Goaziou
Hello,

Here is a patch making latex exporter smarter about lists.

Here is a (vicious) example of what can be exported now.

--
  1. A very long line with a mathematical environment at its end \(x =
 25 \)

 #+BEGIN_EXAMPLE
  3. three
  4. four
 #+END_EXAMPLE

  2. Another line
--

Exporting to html is still a problem though : it doesn't seem to use
org-list-to-html (and thus org-list-parse-list) from org-list.el.

-- Nicolas



0001-Fix-and-improve-list-exporting-to-latex.patch
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