[Orgmode] [babel] babel creating corrupt pdf and png
PDFs created by Babel are giving a file corrupt message when trying to open them and a format not recognised message if I try pngs, Same files created directly from R are fine. This is with Ubuntu 10.04 and Org-mode version 6.36trans (release_7.01h.94.g25ac Example of code I am using is below. Can anyone suggest what I am doing wrong? Many thanks, Graham #+srcname:boxpip45byyear #+begin_src R :session bats :file boxpip45byyear.pdf :exports code boxplot(boxplot(allbats$count[allbats$species==p45]~allbats$year[allbats$species==p45]) #+end_src #+results: boxpip45byyear [[file:boxpip45byyear.pdf]] ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] Org-beamer and beamer overlays
Good Morning :-)
I'm having trouble getting beamer overlays to work properly when
producing slides via org-mode. This may well be due to my not
understanding the documentation!!
I can only get this to work by dropping down into LaTeX - which on this
scale is pretty painless - but feel sure there must be a way to do this
org too. Can anyone show me how?
Below are the headers for my beamer-slide template and a frame with
overlays which works.
If it helps, this is Emacs-23.2.1 and org-mode 7.01h
With thanks
Glyn
8--8--8--8--8--8--8--8--8--
#+TITLE: Beamer slide template
#+AUTHOR:GM
#+EMAIL: g...@xyzxyz.orgle
#+DATE: 2010-08-24
#+DESCRIPTION:
#+KEYWORDS:
#+LANGUAGE: en
#+OPTIONS: H:3 num:t toc:nil \n:nil @:t ::t |:t ^:t -:t f:t *:t :t
#+OPTIONS: TeX:t LaTeX:t skip:nil d:nil todo:t pri:nil tags:not-in-toc
#+INFOJS_OPT: view:nil toc:nil ltoc:t mouse:underline buttons:0
path:http://orgmode.org/org-info.js
#+EXPORT_SELECT_TAGS: export
#+EXPORT_EXCLUDE_TAGS: noexport
#+LINK_UP:
#+LINK_HOME:
#+startup: beamer
#+LaTeX_CLASS: beamer
#+LaTeX_CLASS_OPTIONS: [bigger]
#+latex_header: \modebeamer{\usetheme{Madrid} \usecolortheme{crane}}
#+BEAMER_FRAME_LEVEL: 1
#+BEAMER_HEADER_EXTRA \beamerdefaultoverlayspecification{+-}
#+COLUMNS: %40ITEM %10BEAMER_env(Env) %9BEAMER_envargs(Env Args)
%4BEAMER_col(Col) %10BEAMER_extra(Extra)
* The furniture.
Some old some new
** The Queen's old armchair :B_block:
:PROPERTIES:
:BEAMER_env: block
:BEAMER_envargs: [+-]
:END:
# Notice we have to slip into raw LaTeX to make this work
#+begin_LATEX
\begin{itemize}[+-]
\item Princess Anne
\item Prince Charles
\item corgis
\end{itemize}
#+end_LATEX
___
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] [PATCH] Latest git pull has bug in (org-babel-remove-temporary-directory)
Latest pull is throwing error while quitting emacs. Here is the patch to fix this. ob.el: Fix minor bug * lisp/ob.el (org-babel-remove-temporary-directory) : Pass correct number of arguments to (delete-directory) Thanks and Regards Noorul diff --git a/lisp/ob.el b/lisp/ob.el index 33dbfef..32e2a54 100644 --- a/lisp/ob.el +++ b/lisp/ob.el @@ -1679,7 +1679,7 @@ of `org-babel-temporary-directory'. (defun org-babel-remove-temporary-directory () Remove `org-babel-temporary-directory' on Emacs shutdown. (when (boundp 'org-babel-temporary-directory) -(delete-directory org-babel-temporary-directory t))) +(delete-directory org-babel-temporary-directory))) (add-hook 'kill-emacs-hook 'org-babel-remove-temporary-directory) ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] [Ann] Updates to org-drill (org topics as interactive flashcards using spaced repetition)
Org-Drill has recently been added to the contrib directory of the org repository. Latest version is in repository at: http://bitbucket.org/eeeickythump/org-drill I have made a couple of major updates recently. Changelogs are below. Reports of user experiences are welcome. Version 1.0 Added README with more detailed documentation. Items which are failed during session are presented again before the session ends. Items which were failures at the last review session are presented first in the next session. Added recognition of leech items, based on excessive number of failures. Leeches can be skipped or warned about. When reviewing an item, the prompt shows the number of items remaining. When the session finishes, the minibuffer shows a brief report givisng statistics about total time spent reviewing, number of cards that still need review, etc. Fixed the regexp for cloze-deleted text. Optional face for cloze text in org mode buffers. New card type: twosided. Version 1.1 Added implementation of SM2 algorithm (now supports both SM2 and SM5). Add option 'org-drill-spaced-repetition-algorithm': choose either SM2 or SM5 algorithm. Add option 'org-drill-add-random-noise-to-intervals-p': randomly vary repetition intervals slightly, to avoid clumping. Fixed a bug in org-learn's SM5 algorithm (intervals much too long). Use overlays to display cloze deletions as '[...]' during reviews. Cloze text can contain hints, which will visible during review. Add option 'org-drill-failure-quality': customise which quality is regarded as unambiguous failure (1 or 2). Expanded documentation, and added section on 'incremental reading', with example setup. ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] [PATCH] Latest git pull has bug in (org-babel-remove-temporary-directory)
Hi Noorul, Can I ask what error the directory deletion is causing for you? I have the following delete-directory in my Emacs (latest from Git) ,[delete-directory] | delete-directory is an interactive compiled Lisp function in | `files.el'. | | (delete-directory DIRECTORY optional RECURSIVE TRASH) | | Delete the directory named DIRECTORY. Does not follow symlinks. | If RECURSIVE is non-nil, all files in DIRECTORY are deleted as well. | TRASH non-nil means to trash the directory instead, provided | `delete-by-moving-to-trash' is non-nil. | | When called interactively, TRASH is t if no prefix argument is | given. With a prefix argument, TRASH is nil. | | [back] ` The second argument to `delete-directory' ensures that subdirectories are recursively deleted. Are you using a different version of Emacs (maybe XEmacs?) in which `delete-directory' accepts a different number of arguments? Thanks -- Eric Noorul Islam noo...@noorul.com writes: Latest pull is throwing error while quitting emacs. Here is the patch to fix this. ob.el: Fix minor bug * lisp/ob.el (org-babel-remove-temporary-directory) : Pass correct number of arguments to (delete-directory) Thanks and Regards Noorul diff --git a/lisp/ob.el b/lisp/ob.el index 33dbfef..32e2a54 100644 --- a/lisp/ob.el +++ b/lisp/ob.el @@ -1679,7 +1679,7 @@ of `org-babel-temporary-directory'. (defun org-babel-remove-temporary-directory () Remove `org-babel-temporary-directory' on Emacs shutdown. (when (boundp 'org-babel-temporary-directory) -(delete-directory org-babel-temporary-directory t))) +(delete-directory org-babel-temporary-directory))) (add-hook 'kill-emacs-hook 'org-babel-remove-temporary-directory) ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] [Windows] Quick guide on installing Emacs + OrgMode?
Hello I'd like to take a quick look at Emacs in order to use its OrgMode add-on to get an outliner. Is there a HOWTO somewhere that would get me up and running quickly on Windows? Thank you. ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] [babel] babel creating corrupt pdf and png
Hi Graham, These pdf and png images are being created by R, Babel is simply passing commands to the R process setting the output device according to the :file argument, so for example :file fig1.pdf would result in wrapping your code in pdf(file=fig1.pdf) your-code-here dev.off I'd suggest looking at the R session (bats in your case) to see what errors if any are being thrown by R during execution of the boxplot command. Best -- Eric Graham Smith myotis...@gmail.com writes: PDFs created by Babel are giving a file corrupt message when trying to open them and a format not recognised message if I try pngs, Same files created directly from R are fine. This is with Ubuntu 10.04 and Org-mode version 6.36trans (release_7.01h.94.g25ac Example of code I am using is below. Can anyone suggest what I am doing wrong? Many thanks, Graham #+srcname:boxpip45byyear #+begin_src R :session bats :file boxpip45byyear.pdf :exports code boxplot(boxplot(allbats$count[allbats$species==p45]~allbats$year[allbats$species==p45]) #+end_src #+results: boxpip45byyear [[file:boxpip45byyear.pdf]] ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] [PATCH] Latest git pull has bug in (org-babel-remove-temporary-directory)
On Thu, Aug 26, 2010 at 5:44 PM, Eric Schulte schulte.e...@gmail.com wrote: Hi Noorul, Can I ask what error the directory deletion is causing for you? I have the following delete-directory in my Emacs (latest from Git) ,[delete-directory] | delete-directory is an interactive compiled Lisp function in | `files.el'. | | (delete-directory DIRECTORY optional RECURSIVE TRASH) | | Delete the directory named DIRECTORY. Does not follow symlinks. | If RECURSIVE is non-nil, all files in DIRECTORY are deleted as well. | TRASH non-nil means to trash the directory instead, provided | `delete-by-moving-to-trash' is non-nil. | | When called interactively, TRASH is t if no prefix argument is | given. With a prefix argument, TRASH is nil. | | [back] ` The second argument to `delete-directory' ensures that subdirectories are recursively deleted. Are you using a different version of Emacs (maybe XEmacs?) in which `delete-directory' accepts a different number of arguments? GNU Emacs 23.1.1 (i686-pc-linux-gnu, GTK+ Version 2.12.12) of 2010-01-30 on noorul C-h f delete-directory gives me this - delete-directory is an interactive built-in function in `C source code'. (delete-directory DIRECTORY) Delete the directory named DIRECTORY. Does not follow symlinks. -- Thanks and Regards Noorul Thanks -- Eric Noorul Islam noo...@noorul.com writes: Latest pull is throwing error while quitting emacs. Here is the patch to fix this. ob.el: Fix minor bug * lisp/ob.el (org-babel-remove-temporary-directory) : Pass correct number of arguments to (delete-directory) Thanks and Regards Noorul diff --git a/lisp/ob.el b/lisp/ob.el index 33dbfef..32e2a54 100644 --- a/lisp/ob.el +++ b/lisp/ob.el @@ -1679,7 +1679,7 @@ of `org-babel-temporary-directory'. (defun org-babel-remove-temporary-directory () Remove `org-babel-temporary-directory' on Emacs shutdown. (when (boundp 'org-babel-temporary-directory) - (delete-directory org-babel-temporary-directory t))) + (delete-directory org-babel-temporary-directory))) (add-hook 'kill-emacs-hook 'org-babel-remove-temporary-directory) ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] Re: Trouble syncing files to mobile-org.
With help from Richard Moreland, I found my MobileOrg settings were wrong. I had 'Index File' set to Mobileorg/index.org when it should have been just index.org. Thanks for the help. On Wed, Aug 25, 2010 at 11:29 AM, Jason Schadel jason.scha...@gmail.comwrote: I set it up using the Dropbox option. When I try to sync, it only syncs index.org, mobileorg.org and agendas.org. I looked in the checksums.dat file and noticed that those files are the only files that use 'md5' to generate the checksum. The other files use 'shasum'. I've tried removing all the files and pushing them again but every time mobile-org just syncs index.org and mobileorg.org. After syncing, emacs shows the new items but after a push from emacs and resync on the iphone, the items disappear on the iphone. I'm using version 1.3 of mobileorg and org-mode version 7.01trans. Any ideas? ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] Re: [PATCH] Latest git pull has bug in (org-babel-remove-temporary-directory)
Hi Eric, I have to confirm that bug. Org-mode as of today, emacs 23.1.1. Here is, what my *MESSAGES* buffer tells: CONTENTS...done (No files need saving) org-babel-remove-temporary-directory: Wrong number of arguments: delete-directory, 2 When done with a buffer, type C-x # Auto-saving...done Ciao Detlef On Thu, 26 Aug 2010 06:14:26 -0600 Eric Schulte schulte.e...@gmail.com wrote: Hi Noorul, Can I ask what error the directory deletion is causing for you? I have the following delete-directory in my Emacs (latest from Git) ,[delete-directory] | delete-directory is an interactive compiled Lisp function in | `files.el'. | | (delete-directory DIRECTORY optional RECURSIVE TRASH) | | Delete the directory named DIRECTORY. Does not follow symlinks. | If RECURSIVE is non-nil, all files in DIRECTORY are deleted as well. | TRASH non-nil means to trash the directory instead, provided | `delete-by-moving-to-trash' is non-nil. | | When called interactively, TRASH is t if no prefix argument is | given. With a prefix argument, TRASH is nil. | | [back] ` The second argument to `delete-directory' ensures that subdirectories are recursively deleted. Are you using a different version of Emacs (maybe XEmacs?) in which `delete-directory' accepts a different number of arguments? Thanks -- Eric Noorul Islam noo...@noorul.com writes: Latest pull is throwing error while quitting emacs. Here is the patch to fix this. ob.el: Fix minor bug * lisp/ob.el (org-babel-remove-temporary-directory) : Pass correct number of arguments to (delete-directory) Thanks and Regards Noorul diff --git a/lisp/ob.el b/lisp/ob.el index 33dbfef..32e2a54 100644 --- a/lisp/ob.el +++ b/lisp/ob.el @@ -1679,7 +1679,7 @@ of `org-babel-temporary-directory'. (defun org-babel-remove-temporary-directory () Remove `org-babel-temporary-directory' on Emacs shutdown. (when (boundp 'org-babel-temporary-directory) -(delete-directory org-babel-temporary-directory t))) +(delete-directory org-babel-temporary-directory))) (add-hook 'kill-emacs-hook 'org-babel-remove-temporary-directory) ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] [babel] babel creating corrupt pdf and png
Eriic, Thanks, I'd suggest looking at the R session (bats in your case) to see what errors if any are being thrown by R during execution of the boxplot command. Will do, but sidetracked somewhere else now. Its strange because some are now being produced fine, and other not. They are all working fine if I copy the code into R. Not the code I posted, I hasten to add, as it was jibberish, I now realise, but that isn't the problem Graahm ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] Re: [babel] support plantuml
Mike Gauland mikely...@gmail.com writes: Mike Gauland mikelygee at gmail.com writes: I can get an image if I evaluate the block manually (e.g., via 'C-c C-c' with the cursor on the BEGIN block), but when I export the file the image is invalid. I figured it out. I was getting extra carriage returns in the file. I've fixed them by setting coding-system-for-write to 'no-conversion within the (let). --Mike I also encountered the same problem. But it seems not work perfectly by letting coding-system-for-write be 'no-conversion. For example: In my test.org * test #+BEGIN_SRC plantuml :file test.png Alice - Bob: Authentication Request Bob -- Alice: Authentication Response #+END_SRC #+BEGIN_SRC plantuml :file test2.png Alice2 - Bob: Authentication Request Bob -- Alice: Authentication Response #+END_SRC C-c C-c on the second src block does not create a right image. So here is a new version of ob-plantuml.el, which utilizes the io redirection in shell directly. Hope that it addresses the problem. ob-plantuml.el Description: application/emacs-lisp ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] Re: [babel] support plantuml
Eric Schulte schulte.e...@gmail.com writes: Hi, I agree plantuml certainly makes sense as a new code block type. I'd like to include your ob-plantuml.el file into Org-mode/Babel, would you be willing to complete the FSF assignment process for contributing to Org-mode as described at http://orgmode.org/worg/org-contribute.php? Thanks! -- Eric Yes, I am glad to. And I just fill the form and send it. ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] Re: [babel] support plantuml
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 plantuml looks great - and it could save me quite a bit of work! Could you announce on the list as soon as it is uploaded to git so that I could try it? Cheers, Rainer On 26/08/10 16:26, zwz wrote: Eric Schulte schulte.e...@gmail.com writes: Hi, I agree plantuml certainly makes sense as a new code block type. I'd like to include your ob-plantuml.el file into Org-mode/Babel, would you be willing to complete the FSF assignment process for contributing to Org-mode as described at http://orgmode.org/worg/org-contribute.php? Thanks! -- Eric Yes, I am glad to. And I just fill the form and send it. ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode - -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Natural Sciences Building Office Suite 2039 Stellenbosch University Main Campus, Merriman Avenue Stellenbosch South Africa Tel:+33 - (0)9 53 10 27 44 Cell: +27 - (0)8 39 47 90 42 Fax (SA): +27 - (0)8 65 16 27 82 Fax (D) : +49 - (0)3 21 21 25 22 44 Fax (FR): +33 - (0)9 58 10 27 44 email: rai...@krugs.de Skype: RMkrug -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.10 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/ iEYEARECAAYFAkx2gZIACgkQoYgNqgF2egpMlACfT/Fyjdp96sAZQm/2Dpy3UWuD kWMAni75HMFarehwpyQ1YOEjrbK2oso5 =5sCz -END PGP SIGNATURE- ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] Table of Contents in html export
Andrei Jirnyi a-jir...@northwestern.edu writes:
Hi all,
Are there any options to modify the table of contents in the exported html
files (other than whether to show it and to what level)? Or, if there are
no such options, perhaps I could modify some elisp functions?
Specifically, what I wanted to do was to:
- change its name to just Contents
- put a separator between the TOC and the first section?
If I add smth like
#+html: hr
at the beginning, it gets inserted between the title and the TOC :(
Thanks!!
M-x customize-variable RET org-export-language-setup RET
...and use CSS to add border and spacing at the bottom:
div#table-of-contents
{
padding-bottom:30px;
border-bottom:1px solid #00;
}
HTH
Sebastian
___
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] [Windows] Quick guide on installing Emacs + OrgMode?
Gilles Ganault gilles.gana...@free.fr writes: Hello I'd like to take a quick look at Emacs in order to use its OrgMode add-on to get an outliner. Is there a HOWTO somewhere that would get me up and running quickly on Windows? Thank you. Welcome Gilles, I'm not a windows user, but Get the current stable version here: http://ftp.gnu.org/pub/gnu/emacs/windows/emacs-23.2-bin-i386.zip It's just as easy to install, as any other software. Well, it's easier to remove though, since nothing will remain on your computer (no registry entries...). This makes emacs my editor of choice if I have to work on a window system (i.e. some one elses host). Org-mode comes with this version of emacs. After a while, you might want to upgrade Org mode to the current development version. But for a start the bundled Org mode version is just fine. Sebastian ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] Re: [babel] support plantuml
zwz zhangwe...@gmail.com writes: Eric Schulte schulte.e...@gmail.com writes: Hi, I agree plantuml certainly makes sense as a new code block type. I'd like to include your ob-plantuml.el file into Org-mode/Babel, would you be willing to complete the FSF assignment process for contributing to Org-mode as described at http://orgmode.org/worg/org-contribute.php? Thanks! -- Eric Yes, I am glad to. And I just fill the form and send it. Great! Please do send in the form and then keep me and Carsten posted of the progress of your FSF assignment so that we can add you to the Org-mode contributors list when it's complete. I've just added ob-plantuml.el to Org-mode and pushed it up to the git repository. It's now part of `org-babel-load-languages' so it can be activated just like any other language, the only other configuration required is to set the value of `org-plantuml-jar-path' to point to the plantuml.jar file. I just tried this out myself and it works wonderfully. Thanks! -- Eric ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] Re: problem with babel and R
Hi, A fix to this issue has been pushed up to the repository. As can now be read in the documentation of the `org-babel-insert-result' function [1], there is now a subtle distinction between :results org and :results raw, where :results org will wrap code block results in a begin_src org block. The block wrapper makes it possible for the entirety of the results to be located and removed by Babel upon code block re-evaluation. In addition a new ob-org.el file has been added providing support for evaluation of Org-mode blocks. With this new language support loaded the above technique becomes a working replacement for :results raw allowing the body of the org code block to be interpreted as inline org-mode text on export. This is done through some non-standard default header arguments described in the recent commit message (see [2]) Best -- Eric Eric Schulte schulte.e...@gmail.com writes: Hi David, #+end_results: foo (or some derivative syntax) sounds like a good idea, I'll add it to the Babel task list. Thanks -- Eric David Hajage dhaj...@gmail.com writes: OK, I understand that using :results org, the results is not altered, there is no post processing. But I don't want a post processing, I would like a way to tell babel where is the begining *and the end* of the output produces by a particular R source block. I think an #+end_results: foo at the end of the output could do the job. Then, the option replace could work in all situation, even if a blank line is inserted somewhere in the org output. No? David On Tue, Aug 17, 2010 at 17:15, Eric Schulte schulte.e...@gmail.com wrote: Hi David, David Hajage dhaj...@gmail.com writes: Thank you very much for your answer. My pleasure But when I run the following code directly into R, no extra lines is added by the ascii function: library(ascii) Le chargement a nécessité le package : proto options(asciiType = org) ascii(head(esoph)) # no extra line | | agegp | alcgp | tobgp| ncases | ncontrols | |---+---+---+--++---| | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | | 2 | 25-34 | 0-39g/day | 10-19| 0.00 | 10.00 | | 3 | 25-34 | 0-39g/day | 20-29| 0.00 | 6.00 | | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | | 6 | 25-34 | 40-79 | 10-19| 0.00 | 7.00 | ah, my fault, this isn't an ascii issue. In fact, the solution was to run 'library(ascii)' in another source block. When I run only this: Thanks for pointing this out, I see what's happening now. The :results output header argument (see [1] for information on header arguments) informs Org-mode to collect all of the output of the source code block. This means that when library(ascii) is run, an empty line is collected and appended to the output. Removing the output header argument should fix this issue. My I ask why you are using the ascii package for simple table output? It seems to me that this would be much simpler using the pure Org-mode solution I suggested in my previous email. #+begin_src R :session *R* :results output org replace ascii(head(esoph)) #+end_src #+results: foo | | agegp | alcgp |tobgp | ncases | ncontrols | |---+---+---+--++---| | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | | 2 | 25-34 | 0-39g/day |10-19 | 0.00 | 10.00 | | 3 | 25-34 | 0-39g/day |20-29 | 0.00 | 6.00 | | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | | 6 | 25-34 | 40-79 |10-19 | 0.00 | 7.00 | Everything is then OK. I have no idea why library(ascii)... generates an extra empty line in the results. If I understand, the results is all the text directly under #+results:, until the first empty line. But what happens if the result contains empty lines? Here an example with ascii and Hmisc package: This is not quite right, see [2] for a discussion of results handling. The org option to results is a special case in which no post-processing of the results takes place, and the raw output is inserted into the org-mode buffer. Under normal usage w/o this header argument, results are either tabular or are textual. If tabular a single table can easily be recognized and handled, if textual they are normally enclosed in a block (example, html, latex, etc...), the block then allows for empty lines while still making it clear where the results end. library(ascii) library(Hmisc) ascii(describe(esoph[, 1:3])) #+CAPTION: esoph[, 1:3] - 3 Variable - 88 Observations *agegp* | n | missing | unique | | 88 | 0 | 6 | | | 25-34 | 35-44 | 45-54 | 55-64 | 65-74 | 75+ | | Frequency | 15| 15| 16| 16| 15| 11 | | % |
[Orgmode] Re: [Windows] Quick guide on installing Emacs + OrgMode?
Gilles Ganault gilles.gana...@free.fr writes: Hello I'd like to take a quick look at Emacs in order to use its OrgMode add-on to get an outliner. Is there a HOWTO somewhere that would get me up and running quickly on Windows? Thank you. ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode Hi Gilles, I dont use it myself but I have heard good things about Lennarts version. http://ourcomments.org/cgi-bin/emacsw32-dl-latest.pl ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] Examples in numbered lists
Hi -- Is there any way to make a numbered list preserve its' numbering when there are intervening code or example blocks? For example, if I have smth like this: * testing auto numbering 1. First do something #+begin_example here is an example how to do something #+end_example 2. Then do something else and try to export, it will give me number (1.) for both items. Also if I press M-RET on the last line, it will be re-numbered as 1. Is there any way to avoid this? --aj ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] Examples in numbered lists
you could revert to raw latex code in your document and use
\begin{enumerate}..\end{enumerate} with something like this:
* testing auto numbering
\begin{enumerate}
\item First do something
#+begin_example
here is an example how to do something
#+end_example
\item Then do something else
\end{enumerate}
It's not as elegant as the org-mode approach but it works.
-Neil
On 2010-08-26, at 10:18 AM, Andrei Jirnyi wrote:
Hi --
Is there any way to make a numbered list preserve its' numbering when
there are intervening code or example blocks? For example, if I have smth
like this:
* testing auto numbering
1. First do something
#+begin_example
here is an example how to do something
#+end_example
2. Then do something else
and try to export, it will give me number (1.) for both items. Also if I
press M-RET on the last line, it will be re-numbered as 1.
Is there any way to avoid this?
--aj
___
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://lists.gnu.org/mailman/listinfo/emacs-orgmode
___
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] Re: [babel] support plantuml
Rainer M Krug r.m.k...@gmail.com writes: plantuml looks great - and it could save me quite a bit of work! Could you announce on the list as soon as it is uploaded to git so that I could try it? This is now in the Org repository. For setup and usage information see http://eschulte.github.com/babel-dev/DONE-integrate-plantuml-support.html Best -- Eric Cheers, Rainer On 26/08/10 16:26, zwz wrote: Eric Schulte schulte.e...@gmail.com writes: Hi, I agree plantuml certainly makes sense as a new code block type. I'd like to include your ob-plantuml.el file into Org-mode/Babel, would you be willing to complete the FSF assignment process for contributing to Org-mode as described at http://orgmode.org/worg/org-contribute.php? Thanks! -- Eric Yes, I am glad to. And I just fill the form and send it. ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] a bit offtopic, fonts in exported PDF documents
Hello,
I'm wondering if anyone can
1) reproduce what I'm seeing
2) help in understanding what's going on.
If I export an Org file to LaTeX, the resulting
.tex file contains the following in its header:
\usepackage[T1]{fontenc}
\usepackage{t1enc}
Long story short:
The resulting .PDF file from pdflatex looks quite
bad in evince, and quite good in Acroread. By quite bad,
I mean the fonts are practically illegible, very thin
and wiry.
If I comment out *both* of those package requirements,
recompile the PDF, the resulting PDF looks great in all
viewers I can find.
The Fonts specified in the Properties of the document
change when I use those packages versus not use them.
However, the packages are the default for good reason I'm sure,
but C-c C-e d fires up Evince on my system, so the default
is not very pleasant.
I realize this isn't org-mode question per se, but can
anyone else replicate this, and do you know what's happening?
It seems like a potential problem with Evince specifically, since
Acroread seems to handle the resulting PDF just fine.
Finally, does anyone know why the t1enc package is required, the
only thing I read about it was the following:
http://www.tex.ac.uk/cgi-bin/texfaq2html?label=t1enc
Thanks!
Erik
___
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] a bit offtopic, fonts in exported PDF documents
I know this is old, but check here?
http://ubuntuforums.org/archive/index.php/t-557746.html
http://ubuntuforums.org/archive/index.php/t-557746.htmlThey don't really
solve the problem except by doing what you did -- remove the encoding
lines. Perhaps you should try verifying your LaTeX fonts packages or check
with your distro repository to see what exists? I'm on Arch and they some
fantastic documentation. Here, for example, are the various texlive packages
I can pick from:
http://wiki.archlinux.org/index.php/TeX_Live#Group_texlive-most
Not saying one of those would fix the problem, but I wonder if you could
verify you have the fontsextra package? Just an idea?
Or run 'pdflatex file.tex' from the command line to see if any errors come
up when using pdflatex directly vs. through org? You might be able to see
more of the inner details that way and if it's complaining?
John
On Thu, Aug 26, 2010 at 12:34 PM, Erik Iverson er...@ccbr.umn.edu wrote:
Hello,
I'm wondering if anyone can
1) reproduce what I'm seeing
2) help in understanding what's going on.
If I export an Org file to LaTeX, the resulting
.tex file contains the following in its header:
\usepackage[T1]{fontenc}
\usepackage{t1enc}
Long story short:
The resulting .PDF file from pdflatex looks quite
bad in evince, and quite good in Acroread. By quite bad,
I mean the fonts are practically illegible, very thin
and wiry.
If I comment out *both* of those package requirements,
recompile the PDF, the resulting PDF looks great in all
viewers I can find.
The Fonts specified in the Properties of the document
change when I use those packages versus not use them.
However, the packages are the default for good reason I'm sure,
but C-c C-e d fires up Evince on my system, so the default
is not very pleasant.
I realize this isn't org-mode question per se, but can
anyone else replicate this, and do you know what's happening?
It seems like a potential problem with Evince specifically, since
Acroread seems to handle the resulting PDF just fine.
Finally, does anyone know why the t1enc package is required, the
only thing I read about it was the following:
http://www.tex.ac.uk/cgi-bin/texfaq2html?label=t1enc
Thanks!
Erik
___
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://lists.gnu.org/mailman/listinfo/emacs-orgmode
___
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] [BUG] export to latex breaks
Hi All, I'm on Org-mode version 7.01trans (release_7.01h.205.ge3d2) The LaTeX export of document test.org breaks. The headings Day 1 and Day 2 and content under them is not visible. [I have org-odd-levels-only set] Git bisect says - bb0a1f190be361ce1d717d79d411b88406d74c33 is the first bad commit commit bb0a1f190be361ce1d717d79d411b88406d74c33 Author: Stephen Eglen s.j.eg...@damtp.cam.ac.uk Date: Tue Jul 27 20:04:42 2010 + The patch below fixes the problem partially. Export of test.org works. But, export of test2.org breaks. The subheading Day 2 does not show up. [test2.org produces the same output without applying the patch, too. I'm do not think that is an acceptable output.] HTH, Puneeth - PARTIAL FIX - diff --git a/lisp/org-latex.el b/lisp/org-latex.el index 4f27f42..6bc6f71 100644 --- a/lisp/org-latex.el +++ b/lisp/org-latex.el @@ -966,10 +966,10 @@ If ODD Is non-nil, assume subcontent only contains odd sections. (number-to-string (+ (if odd 4 2) level)) ,\\}\\) \\(.*\\)$) nil t) - (setq nstars (1- (- (match-end 1) (match-beginning 1 + (setq nstars (- (match-end 1) (match-beginning 1))) (setq new-level (if odd - (/ (+ 3 nstars) 2);; not entirely sure why +3! - nstars))) + (- nstars 2) + (1- nstars (if nstars (org-export-latex-parse-global new-level odd) nil) ; subcontent is nil - test.org Description: Binary data test2.org Description: Binary data ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] Re: [Windows] Quick guide on installing Emacs + OrgMode?
On Thu, 26 Aug 2010 18:09:07 +0200, Richard Riley rile...@gmail.com wrote: I dont use it myself but I have heard good things about Lennarts version. http://ourcomments.org/cgi-bin/emacsw32-dl-latest.pl Thanks guys for the tips. ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] Bug: export aborts if ':eval query/never' in source code blocks
#+BEGIN_SRC R :eval query ... #+END_SRC If the above is in an org file, the user runs an export (C-c C-e), and the user types 'no' when asked whether to evaluate the code block, then the whole export process is aborted (no further blocks are processed and no export output is produced). The same thing happens with ':eval never'. Paul ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] Bug: export aborts if ':eval query/never' in source code blocks
Which version of org-mode? I can't replicate on git version from minutes ago.. Paul Sexton wrote: #+BEGIN_SRC R :eval query ... #+END_SRC If the above is in an org file, the user runs an export (C-c C-e), and the user types 'no' when asked whether to evaluate the code block, then the whole export process is aborted (no further blocks are processed and no export output is produced). The same thing happens with ':eval never'. Paul ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] Re: problem with babel and R
I am so sorry to bother you again, but I must miss something. When I write: #+begin_src R :results output org :exports both library(ascii) options(asciiType = org) ascii(head(esoph)) #+end_src The results is: #+results: #+BEGIN_SRC org | | agegp | alcgp | tobgp| ncases | ncontrols | |---+---+---+--++---| | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | | 2 | 25-34 | 0-39g/day | 10-19| 0.00 | 10.00 | | 3 | 25-34 | 0-39g/day | 20-29| 0.00 | 6.00 | | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | | 6 | 25-34 | 40-79 | 10-19| 0.00 | 7.00 | #+END_SRC OK, the result is surrounded by BEGIN_SRC org/END_SRC. But when I export this, the results is exported as fontified org code. What should I do to have this result interpreted as org markup? David On Thu, Aug 26, 2010 at 18:10, Eric Schulte schulte.e...@gmail.com wrote: Hi, A fix to this issue has been pushed up to the repository. As can now be read in the documentation of the `org-babel-insert-result' function [1], there is now a subtle distinction between :results org and :results raw, where :results org will wrap code block results in a begin_src org block. The block wrapper makes it possible for the entirety of the results to be located and removed by Babel upon code block re-evaluation. In addition a new ob-org.el file has been added providing support for evaluation of Org-mode blocks. With this new language support loaded the above technique becomes a working replacement for :results raw allowing the body of the org code block to be interpreted as inline org-mode text on export. This is done through some non-standard default header arguments described in the recent commit message (see [2]) Best -- Eric Eric Schulte schulte.e...@gmail.com writes: Hi David, #+end_results: foo (or some derivative syntax) sounds like a good idea, I'll add it to the Babel task list. Thanks -- Eric David Hajage dhaj...@gmail.com writes: OK, I understand that using :results org, the results is not altered, there is no post processing. But I don't want a post processing, I would like a way to tell babel where is the begining *and the end* of the output produces by a particular R source block. I think an #+end_results: foo at the end of the output could do the job. Then, the option replace could work in all situation, even if a blank line is inserted somewhere in the org output. No? David On Tue, Aug 17, 2010 at 17:15, Eric Schulte schulte.e...@gmail.com wrote: Hi David, David Hajage dhaj...@gmail.com writes: Thank you very much for your answer. My pleasure But when I run the following code directly into R, no extra lines is added by the ascii function: library(ascii) Le chargement a nécessité le package : proto options(asciiType = org) ascii(head(esoph)) # no extra line | | agegp | alcgp | tobgp| ncases | ncontrols | |---+---+---+--++---| | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | | 2 | 25-34 | 0-39g/day | 10-19| 0.00 | 10.00 | | 3 | 25-34 | 0-39g/day | 20-29| 0.00 | 6.00 | | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | | 6 | 25-34 | 40-79 | 10-19| 0.00 | 7.00 | ah, my fault, this isn't an ascii issue. In fact, the solution was to run 'library(ascii)' in another source block. When I run only this: Thanks for pointing this out, I see what's happening now. The :results output header argument (see [1] for information on header arguments) informs Org-mode to collect all of the output of the source code block. This means that when library(ascii) is run, an empty line is collected and appended to the output. Removing the output header argument should fix this issue. My I ask why you are using the ascii package for simple table output? It seems to me that this would be much simpler using the pure Org-mode solution I suggested in my previous email. #+begin_src R :session *R* :results output org replace ascii(head(esoph)) #+end_src #+results: foo | | agegp | alcgp |tobgp | ncases | ncontrols | |---+---+---+--++---| | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | | 2 | 25-34 | 0-39g/day |10-19 | 0.00 | 10.00 | | 3 | 25-34 | 0-39g/day |20-29 | 0.00 | 6.00 | | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | | 6 | 25-34 | 40-79 |10-19 | 0.00 | 7.00 | Everything is then OK. I have no idea why library(ascii)... generates an extra empty line in the results. If I
Re: [Orgmode] a bit offtopic, fonts in exported PDF documents
John,
Thank you for your reply.
For those that don't want to read all that follows, please note my
conclusion, given here:
Since orgmode is automatically telling latex to use T1 encoding,
perhaps we should somewhere document to the user that Type 1
fonts should be available to get the best looking PDF possible.
Otherwise, type 3 fonts will be substituted. I got suitable
Type-1 fonts by installing the texlive-fonts-extra package
under Ubuntu.
(Of course, that could already be documented somewhere :) )
All of this explained very succinctly right here:
http://www.latex-community.org/forum/viewtopic.php?f=5t=571
Here, for example, are the
various texlive packages I can pick
from: http://wiki.archlinux.org/index.php/TeX_Live#Group_texlive-most
Not saying one of those would fix the problem, but I wonder if you could
verify you have the fontsextra package? Just an idea?
It was a great idea. It was what was wrong. :)
Under Ubuntu, I simply install texlive-fonts-extra, and it works.
Of course, I was a bit more curious as to exactly *what* and *why*
things were behaving as they were, so here is a summary for those who
may see the same issue.
Caveat: I don't know much about font issues, so the following is a bit
imprecise and possibly even plain wrong :).
By including [T1]{fontenc}, we are telling LaTeX to use so called T1
font encoding. Simple enough. However, the original Computer Modern
fonts were not designed with this encoding in mind. There have been
Type 1 replacements made and can be found in the Cm-super package.
This is part of what texlive-fonts-extra installs, but was not
available on either of the systems I tested on, one Ubuntu, one
Fedora.
Not having these font packages, I set out to determine which
fonts were being used in the PDF depending on what encodings we
use.
The best way I have of checking what's going on is making a PDF,
and then opening it up in Evince or acroread, and looking at 'fonts'
tab under the document properties.
As things were, i.e.: before installing texlive-fonts-extra, and
while including T1 font encoding, things looked
quite bad under Evince. Looking at the fonts included in the PDF
showed why. Instead of the list of computer modern fonts I get when
I don't include the T1 encoding, I got a list of Type 3 fonts with
No Name in evince and names like F16, F20, ... in acrobat.
Why these looked ok under acrobat is not understood by me, but
they certainly looked poor under evince.
I could 'fix' this many ways, including removing the lines referencing
T1 encoding from the .tex file, or changing fontenc to OT1 instead of
T1, essentially the same fix. This allowed the good old computer
modern fonts to be included in the PDF, and all was well. But I wanted
to know why T1 encoding wasn't working.
After installing texlive-fonts-extra, I now have the
cm-super package. These fonts now are used when I specify the T1
encoding. (I think!) Now, my list of fonts under evince looks like
sfrm1200 for example. No more Type 3 fonts, they are all Type 1.
This all seems to be explained in Chapter 7 of The LaTeX Companion,
section 7.5.
I would be interested in what the names of the fonts embedded in
PDF documents from other users are? Are you all using these
cm-super fonts?
Alternatively, I was also able to get nice fonts by using the
Modern Latin package, \usepackage{lmodern} with T1 encoding
specified.
The upshot is: If you're using an OS with a package manager,
it might pay to do a texlive-full type install, instead of just
doing the bits and pieces of latex packages as I've been doing!
Unfortunately, I think with at least Ubuntu, that's not the
default, so many users may be having the same issue as I am,
without even realizing it.
Hope this helps,
--Erik
On Thu, Aug 26, 2010 at 12:34 PM, Erik Iverson er...@ccbr.umn.edu
mailto:er...@ccbr.umn.edu wrote:
Hello,
I'm wondering if anyone can
1) reproduce what I'm seeing
2) help in understanding what's going on.
If I export an Org file to LaTeX, the resulting
.tex file contains the following in its header:
\usepackage[T1]{fontenc}
\usepackage{t1enc}
Long story short:
The resulting .PDF file from pdflatex looks quite
bad in evince, and quite good in Acroread. By quite bad,
I mean the fonts are practically illegible, very thin
and wiry.
If I comment out *both* of those package requirements,
recompile the PDF, the resulting PDF looks great in all
viewers I can find.
The Fonts specified in the Properties of the document
change when I use those packages versus not use them.
However, the packages are the default for good reason I'm sure,
but C-c C-e d fires up Evince on my system, so the default
is not very pleasant.
I realize this isn't org-mode question per se, but can
anyone else replicate this, and do you know what's happening?
It seems like a potential problem with Evince specifically, since
Acroread
Re: [Orgmode] Bug: export aborts if ':eval query/never' in source code blocks
Hi Paul, This is on the top of the stack for Babel bug fixes (see [1]), and I hope to have a solution pushed up to the git repository soon. I'll reply to this email when this issue is resolved. Thanks -- Eric Paul Sexton psex...@xnet.co.nz writes: #+BEGIN_SRC R :eval query ... #+END_SRC If the above is in an org file, the user runs an export (C-c C-e), and the user types 'no' when asked whether to evaluate the code block, then the whole export process is aborted (no further blocks are processed and no export output is produced). The same thing happens with ':eval never'. Paul ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode Footnotes: [1] http://eschulte.github.com/babel-dev/STARTED-How-to-quietly-exclude-block-from-evaluation-.html ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] a bit offtopic, fonts in exported PDF documents
Alan,
Hi Erik,
I'm on Debian Squeeze, and I don't seem to have this problem. The fonts
reported in the Properties are LMRoman and they look ok in Evince.
I have all the latex extras installed.
If you've seen my recent follow-up, that makes sense to me.
So you are somehow getting LMRoman as your font *without*
including \usepackage{lmodern} ? Can you verify that your
exported .tex files don't include that line?
Thanks!
--Erik
___
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] a bit offtopic, fonts in exported PDF documents - oops
Alan L Tyree wrote:
On Thu, 26 Aug 2010 12:34:08 -0500
Erik Iverson er...@ccbr.umn.edu wrote:
Hello,
I'm wondering if anyone can
1) reproduce what I'm seeing
2) help in understanding what's going on.
If I export an Org file to LaTeX, the resulting
.tex file contains the following in its header:
SNIP
Erik,
I just realised that I had added \usepackage{lmodern} to get the result
that I mentioned in my last post.
Without the lmodern package, the output still looks OK, but the fonts
are No Name Type 3 Embedded.
Great, that makes sense to me. I noticed a significant loss of quality
with my type 3 fonts at 100% zoom. They could have been different type
3 fonts, or different screen resolutions, document zoom, ... etc.
___
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gnu.org
http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] Re: a bit offtopic, fonts in exported PDF documents
Erik Iverson er...@ccbr.umn.edu writes: John, Thank you for your reply. For those that don't want to read all that follows, please note my conclusion, given here: Since orgmode is automatically telling latex to use T1 encoding, perhaps we should somewhere document to the user that Type 1 fonts should be available to get the best looking PDF possible. Otherwise, type 3 fonts will be substituted. I got suitable Type-1 fonts by installing the texlive-fonts-extra package under Ubuntu. Note that T1 *font encoding* has nothing to do with Type 1 fonts! As far as I understand, you need Type 1 fonts for good looking pdfs (Type 3 are bitmap fonts and thus not scalable), but the actual font encoding shouldn't matter. Just my 2 cents Markus ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] Re: problem with babel and R
Oups, I forgot ob-org in my .emacs... OK, now, really sorry for this. David On Thu, Aug 26, 2010 at 22:20, David Hajage dhaj...@gmail.com wrote: I am so sorry to bother you again, but I must miss something. When I write: #+begin_src R :results output org :exports both library(ascii) options(asciiType = org) ascii(head(esoph)) #+end_src The results is: #+results: #+BEGIN_SRC org | | agegp | alcgp | tobgp| ncases | ncontrols | |---+---+---+--++---| | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | | 2 | 25-34 | 0-39g/day | 10-19| 0.00 | 10.00 | | 3 | 25-34 | 0-39g/day | 20-29| 0.00 | 6.00 | | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | | 6 | 25-34 | 40-79 | 10-19| 0.00 | 7.00 | #+END_SRC OK, the result is surrounded by BEGIN_SRC org/END_SRC. But when I export this, the results is exported as fontified org code. What should I do to have this result interpreted as org markup? David On Thu, Aug 26, 2010 at 18:10, Eric Schulte schulte.e...@gmail.comwrote: Hi, A fix to this issue has been pushed up to the repository. As can now be read in the documentation of the `org-babel-insert-result' function [1], there is now a subtle distinction between :results org and :results raw, where :results org will wrap code block results in a begin_src org block. The block wrapper makes it possible for the entirety of the results to be located and removed by Babel upon code block re-evaluation. In addition a new ob-org.el file has been added providing support for evaluation of Org-mode blocks. With this new language support loaded the above technique becomes a working replacement for :results raw allowing the body of the org code block to be interpreted as inline org-mode text on export. This is done through some non-standard default header arguments described in the recent commit message (see [2]) Best -- Eric Eric Schulte schulte.e...@gmail.com writes: Hi David, #+end_results: foo (or some derivative syntax) sounds like a good idea, I'll add it to the Babel task list. Thanks -- Eric David Hajage dhaj...@gmail.com writes: OK, I understand that using :results org, the results is not altered, there is no post processing. But I don't want a post processing, I would like a way to tell babel where is the begining *and the end* of the output produces by a particular R source block. I think an #+end_results: foo at the end of the output could do the job. Then, the option replace could work in all situation, even if a blank line is inserted somewhere in the org output. No? David On Tue, Aug 17, 2010 at 17:15, Eric Schulte schulte.e...@gmail.com wrote: Hi David, David Hajage dhaj...@gmail.com writes: Thank you very much for your answer. My pleasure But when I run the following code directly into R, no extra lines is added by the ascii function: library(ascii) Le chargement a nécessité le package : proto options(asciiType = org) ascii(head(esoph)) # no extra line | | agegp | alcgp | tobgp| ncases | ncontrols | |---+---+---+--++---| | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | | 2 | 25-34 | 0-39g/day | 10-19| 0.00 | 10.00 | | 3 | 25-34 | 0-39g/day | 20-29| 0.00 | 6.00 | | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | | 6 | 25-34 | 40-79 | 10-19| 0.00 | 7.00 | ah, my fault, this isn't an ascii issue. In fact, the solution was to run 'library(ascii)' in another source block. When I run only this: Thanks for pointing this out, I see what's happening now. The :results output header argument (see [1] for information on header arguments) informs Org-mode to collect all of the output of the source code block. This means that when library(ascii) is run, an empty line is collected and appended to the output. Removing the output header argument should fix this issue. My I ask why you are using the ascii package for simple table output? It seems to me that this would be much simpler using the pure Org-mode solution I suggested in my previous email. #+begin_src R :session *R* :results output org replace ascii(head(esoph)) #+end_src #+results: foo | | agegp | alcgp |tobgp | ncases | ncontrols | |---+---+---+--++---| | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | | 2 | 25-34 | 0-39g/day |10-19 | 0.00 | 10.00 | | 3 | 25-34 | 0-39g/day |20-29 | 0.00 | 6.00 | | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | | 6 | 25-34 | 40-79
Re: [Orgmode] Examples in numbered lists
Hello, Andrei Jirnyi writes: Is there any way to make a numbered list preserve its' numbering when there are intervening code or example blocks? For example, if I have smth like this: * testing auto numbering 1. First do something #+begin_example here is an example how to do something #+end_example 2. Then do something else and try to export, it will give me number (1.) for both items. Also if I press M-RET on the last line, it will be re-numbered as 1. Is there any way to avoid this? Indent your list like this: * testing auto numbering 1. First do something #+begin_example here is an example how to do something #+end_example 2. Then do something else Regards, -- Nicolas ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] Bug: export aborts if ':eval query/never' in source code blocks
Eric, As a follow-up on a related issue: What if I want to eval a code block for some side-effect, but *not* include code or results in export. This assumes I'm using :session. Is there a way to currently do that? Setting :exports none seems to block evaluating of the code, can the :eval argument 'override' that so the block is eval'd, but no export is produced. In R, I currently can just put the last line of the block I want this behavior for as NULL with :exports results and it seems to do what I want. Just wondering if there was a more 'official' way? Here's a sample file that seems to do as I want, with the NULL trick. Just wonder if :eval can help at all. * I want only the 2nd block exported #+begin_src R :exports results :session x - 2 + 3 NULL #+end_src #+begin_src R :session :exports results x #+end_src Eric Schulte wrote: Hi Paul, This is on the top of the stack for Babel bug fixes (see [1]), and I hope to have a solution pushed up to the git repository soon. I'll reply to this email when this issue is resolved. Thanks -- Eric Paul Sexton psex...@xnet.co.nz writes: #+BEGIN_SRC R :eval query ... #+END_SRC If the above is in an org file, the user runs an export (C-c C-e), and the user types 'no' when asked whether to evaluate the code block, then the whole export process is aborted (no further blocks are processed and no export output is produced). The same thing happens with ':eval never'. Paul ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode Footnotes: [1] http://eschulte.github.com/babel-dev/STARTED-How-to-quietly-exclude-block-from-evaluation-.html ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] Re: problem with babel and R
One comment: When I execute all the buffer (org-babel-execute-buffer), the result is: #+begin_src R :results output org :exports both library(ascii) options(asciiType = org) ascii(head(esoph, 3)) #+end_src #+results: #+BEGIN_SRC org | | agegp | alcgp | tobgp| ncases | ncontrols | |---+---+---+--++---| | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | | 2 | 25-34 | 0-39g/day | 10-19| 0.00 | 10.00 | | 3 | 25-34 | 0-39g/day | 20-29| 0.00 | 6.00 | #+END_SRC #+results: | | agegp | alcgp |tobgp | ncases | ncontrols | |---+---+---+--++---| | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | | 2 | 25-34 | 0-39g/day |10-19 | 0.00 | 10.00 | | 3 | 25-34 | 0-39g/day |20-29 | 0.00 | 6.00 | Then, the results is repeated twice in the buffer. I understand why, but perhaps the silent option should be turned on by default for org code blocks? David On Thu, Aug 26, 2010 at 23:51, David Hajage dhaj...@gmail.com wrote: Oups, I forgot ob-org in my .emacs... OK, now, really sorry for this. David On Thu, Aug 26, 2010 at 22:20, David Hajage dhaj...@gmail.com wrote: I am so sorry to bother you again, but I must miss something. When I write: #+begin_src R :results output org :exports both library(ascii) options(asciiType = org) ascii(head(esoph)) #+end_src The results is: #+results: #+BEGIN_SRC org | | agegp | alcgp | tobgp| ncases | ncontrols | |---+---+---+--++---| | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | | 2 | 25-34 | 0-39g/day | 10-19| 0.00 | 10.00 | | 3 | 25-34 | 0-39g/day | 20-29| 0.00 | 6.00 | | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | | 6 | 25-34 | 40-79 | 10-19| 0.00 | 7.00 | #+END_SRC OK, the result is surrounded by BEGIN_SRC org/END_SRC. But when I export this, the results is exported as fontified org code. What should I do to have this result interpreted as org markup? David On Thu, Aug 26, 2010 at 18:10, Eric Schulte schulte.e...@gmail.comwrote: Hi, A fix to this issue has been pushed up to the repository. As can now be read in the documentation of the `org-babel-insert-result' function [1], there is now a subtle distinction between :results org and :results raw, where :results org will wrap code block results in a begin_src org block. The block wrapper makes it possible for the entirety of the results to be located and removed by Babel upon code block re-evaluation. In addition a new ob-org.el file has been added providing support for evaluation of Org-mode blocks. With this new language support loaded the above technique becomes a working replacement for :results raw allowing the body of the org code block to be interpreted as inline org-mode text on export. This is done through some non-standard default header arguments described in the recent commit message (see [2]) Best -- Eric Eric Schulte schulte.e...@gmail.com writes: Hi David, #+end_results: foo (or some derivative syntax) sounds like a good idea, I'll add it to the Babel task list. Thanks -- Eric David Hajage dhaj...@gmail.com writes: OK, I understand that using :results org, the results is not altered, there is no post processing. But I don't want a post processing, I would like a way to tell babel where is the begining *and the end* of the output produces by a particular R source block. I think an #+end_results: foo at the end of the output could do the job. Then, the option replace could work in all situation, even if a blank line is inserted somewhere in the org output. No? David On Tue, Aug 17, 2010 at 17:15, Eric Schulte schulte.e...@gmail.com wrote: Hi David, David Hajage dhaj...@gmail.com writes: Thank you very much for your answer. My pleasure But when I run the following code directly into R, no extra lines is added by the ascii function: library(ascii) Le chargement a nécessité le package : proto options(asciiType = org) ascii(head(esoph)) # no extra line | | agegp | alcgp | tobgp| ncases | ncontrols | |---+---+---+--++---| | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | | 2 | 25-34 | 0-39g/day | 10-19| 0.00 | 10.00 | | 3 | 25-34 | 0-39g/day | 20-29| 0.00 | 6.00 | | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | | 6 | 25-34 | 40-79 | 10-19| 0.00 | 7.00 | ah, my fault, this isn't an ascii issue. In fact, the solution was to run 'library(ascii)' in another source block. When I run only this: Thanks for pointing this out, I see what's happening now. The :results
Re: [Orgmode] Re: a bit offtopic, fonts in exported PDF documents
Markus Heller wrote: Erik Iverson er...@ccbr.umn.edu writes: John, Thank you for your reply. For those that don't want to read all that follows, please note my conclusion, given here: Since orgmode is automatically telling latex to use T1 encoding, perhaps we should somewhere document to the user that Type 1 fonts should be available to get the best looking PDF possible. Otherwise, type 3 fonts will be substituted. I got suitable Type-1 fonts by installing the texlive-fonts-extra package under Ubuntu. Note that T1 *font encoding* has nothing to do with Type 1 fonts! Yes, thank you. I gathered that eventually, but it did take some time to appreciate they are completely different concepts. Is the following correct? Some Type 1 fonts *support* the T1 encoding. Computer Modern is not one of those, so you need some that do. CM-super or Latin Modern are two Type 1 font packages that do support the T1 encoding. As far as I understand, you need Type 1 fonts for good looking pdfs (Type 3 are bitmap fonts and thus not scalable), but the actual font encoding shouldn't matter. Yes! But as I think(?) I discovered, when T1 encoding is specified, the Type 1 Computer Modern fonts don't support it, and therefore are not included in the PDF. In my case, a Type 3 font was substituted that looked nasty. I needed to install proper Type 1 fonts that support the T1 encoding, like Cm-super or Latin Modern. Since orgmode is telling latex to use T1 encoding by default, I was bitten by the fact that I had no Type 1 fonts that supported this encoding, with my bare-bones latex install from a relatively common Linux distro. My message is just serving as information about how to get those fonts. Thanks! ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] a bit offtopic, fonts in exported PDF documents
On Thu, Aug 26, 2010 at 4:14 PM, Erik Iverson er...@ccbr.umn.edu wrote:
John,
Thank you for your reply.
No problem -- nice report and I'm glad you got things fixed!!
John
For those that don't want to read all that follows, please note my
conclusion, given here:
Since orgmode is automatically telling latex to use T1 encoding,
perhaps we should somewhere document to the user that Type 1
fonts should be available to get the best looking PDF possible.
Otherwise, type 3 fonts will be substituted. I got suitable
Type-1 fonts by installing the texlive-fonts-extra package
under Ubuntu.
(Of course, that could already be documented somewhere :) )
All of this explained very succinctly right here:
http://www.latex-community.org/forum/viewtopic.php?f=5t=571
Here, for example, are the
various texlive packages I can pick from:
http://wiki.archlinux.org/index.php/TeX_Live#Group_texlive-most
Not saying one of those would fix the problem, but I wonder if you could
verify you have the fontsextra package? Just an idea?
It was a great idea. It was what was wrong. :)
Under Ubuntu, I simply install texlive-fonts-extra, and it works.
Of course, I was a bit more curious as to exactly *what* and *why*
things were behaving as they were, so here is a summary for those who
may see the same issue.
Caveat: I don't know much about font issues, so the following is a bit
imprecise and possibly even plain wrong :).
By including [T1]{fontenc}, we are telling LaTeX to use so called T1
font encoding. Simple enough. However, the original Computer Modern
fonts were not designed with this encoding in mind. There have been
Type 1 replacements made and can be found in the Cm-super package.
This is part of what texlive-fonts-extra installs, but was not
available on either of the systems I tested on, one Ubuntu, one
Fedora.
Not having these font packages, I set out to determine which
fonts were being used in the PDF depending on what encodings we
use.
The best way I have of checking what's going on is making a PDF,
and then opening it up in Evince or acroread, and looking at 'fonts'
tab under the document properties.
As things were, i.e.: before installing texlive-fonts-extra, and
while including T1 font encoding, things looked
quite bad under Evince. Looking at the fonts included in the PDF
showed why. Instead of the list of computer modern fonts I get when
I don't include the T1 encoding, I got a list of Type 3 fonts with
No Name in evince and names like F16, F20, ... in acrobat.
Why these looked ok under acrobat is not understood by me, but
they certainly looked poor under evince.
I could 'fix' this many ways, including removing the lines referencing
T1 encoding from the .tex file, or changing fontenc to OT1 instead of
T1, essentially the same fix. This allowed the good old computer
modern fonts to be included in the PDF, and all was well. But I wanted
to know why T1 encoding wasn't working.
After installing texlive-fonts-extra, I now have the
cm-super package. These fonts now are used when I specify the T1
encoding. (I think!) Now, my list of fonts under evince looks like
sfrm1200 for example. No more Type 3 fonts, they are all Type 1.
This all seems to be explained in Chapter 7 of The LaTeX Companion,
section 7.5.
I would be interested in what the names of the fonts embedded in
PDF documents from other users are? Are you all using these
cm-super fonts?
Alternatively, I was also able to get nice fonts by using the
Modern Latin package, \usepackage{lmodern} with T1 encoding
specified.
The upshot is: If you're using an OS with a package manager,
it might pay to do a texlive-full type install, instead of just
doing the bits and pieces of latex packages as I've been doing!
Unfortunately, I think with at least Ubuntu, that's not the
default, so many users may be having the same issue as I am,
without even realizing it.
Hope this helps,
--Erik
On Thu, Aug 26, 2010 at 12:34 PM, Erik Iverson er...@ccbr.umn.edumailto:
er...@ccbr.umn.edu wrote:
Hello,
I'm wondering if anyone can
1) reproduce what I'm seeing
2) help in understanding what's going on.
If I export an Org file to LaTeX, the resulting
.tex file contains the following in its header:
\usepackage[T1]{fontenc}
\usepackage{t1enc}
Long story short:
The resulting .PDF file from pdflatex looks quite
bad in evince, and quite good in Acroread. By quite bad,
I mean the fonts are practically illegible, very thin
and wiry.
If I comment out *both* of those package requirements,
recompile the PDF, the resulting PDF looks great in all
viewers I can find.
The Fonts specified in the Properties of the document
change when I use those packages versus not use them.
However, the packages are the default for good reason I'm sure,
but C-c C-e d fires up Evince on my system, so the default
is not very
[Orgmode] Re: [PATCH] Latest git pull has bug in (org-babel-remove-temporary-directory)
Hi Noorul, Thanks for pointing out the above, I guess files.el can't be assumed to be loaded. I've pushed up a fix. I have also: --- delete-directory is an interactive compiled Lisp function in `files.el'. (delete-directory DIRECTORY optional RECURSIVE) Delete the directory named DIRECTORY. Does not follow symlinks. If RECURSIVE is non-nil, all files in DIRECTORY are deleted as well. - It should be related with these posts on emacs.devel: http://thread.gmane.org/gmane.emacs.tramp/6964/focus=115812 http://article.gmane.org/gmane.emacs.devel/115812 http://article.gmane.org/gmane.emacs.tramp/6974 I don't have files.el loaded explicitely in my .emacs file, and I don't know where it is loaded? ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] a bit offtopic, fonts in exported PDF documents
Erik Iverson er...@ccbr.umn.edu wrote: For those that don't want to read all that follows, please note my conclusion, given here: Since orgmode is automatically telling latex to use T1 encoding, perhaps we should somewhere document to the user that Type 1 fonts should be available to get the best looking PDF possible. Otherwise, type 3 fonts will be substituted. I got suitable Type-1 fonts by installing the texlive-fonts-extra package under Ubuntu. [With apologies for the length (and the further off-topic direction) of this post, I hope the following is of interest to a few people. Those of you who have no interest in the finer points of TeX fontological history can safely hit Delete now.] I think the conclusion is substantively correct, but there are a couple of minor nits: I would leave out the first line of the second paragraph above (Since orgmode...T1 encoding,). I would also note that the problem is a viewer problem, not a Type3 problem (see below). Here's why: * Type1 fonts (e.g. the Adobe Postscript standard fonts) are implemented as scalable outlines, basically programs that describe what the glyph will look like. It's easy to tell the program: draw this glyph at 1.41421 the size (or whatever other scaling factor you want), hence scalable. * Type3 fonts are usually bitmaps (that's actually an oversimplification, but it's true in the vast majority of cases), so you need a multiplicity of them at different sizes to cover the needs of a document. Both of these (and presumably the missing Type2 as well, although I have never seen one of those) were defined by Adobe. T1-encoding has nothing to do with Type1 fonts except for the unfortunate similarity of the names: an encoding is just the table that translates from numbers to glyphs in a font. Knuth used a very peculiar encoding originally (now called OT1) and in 1990, the TeX people got together at Cork, Ireland, and hashed out this new encoding (it was called Cork encoding for a long time, but at some point it became T1). The T1-encoding *is* pretty much the encoding that Adobe used for *its* fonts (whether Type1 or Type3). In particular, there were T1-encoded Type3 fonts (the so called EC fonts, in their original incarnation, before they were auto-traced and made into Type1 fonts) and there are non-T1 encoded Type1 fonts (in particular, T1-encoding deals with text, mostly European languages that use the Latin alphabet or slight variations thereof, so Cyrillic, Greek, non-European alphabets and symbols of various kinds have their own encodings: whether a font for any of these would be Type1 or Type3 is a matter of implementation.) Here are some links of interest from the TeX FAQ: What are encodings? http://www.tex.ac.uk/cgi-bin/texfaq2html?label=whatenc What are the EC fonts? http://www.tex.ac.uk/cgi-bin/texfaq2html?label=ECfonts Adobe font formats http://www.tex.ac.uk/cgi-bin/texfaq2html?label=adobetypen This last one (and a link therein to PDF quality) is of particular interest, because it describes the situation when Acrobar Reader (version 6) exhibited exactly the problem that you encountered with Evince. Acrobat Reader has been fixed since then so it deals with Type3 fonts reasonably, but I guess Evince still mistreats Type3 fonts (they may believe in the motto that All the fonts (that matter) are Type1.) Cheers, Nick ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] Re: a bit offtopic, fonts in exported PDF documents
Erik Iverson er...@ccbr.umn.edu writes: Markus Heller wrote: Erik Iverson er...@ccbr.umn.edu writes: John, Thank you for your reply. For those that don't want to read all that follows, please note my conclusion, given here: Since orgmode is automatically telling latex to use T1 encoding, perhaps we should somewhere document to the user that Type 1 fonts should be available to get the best looking PDF possible. Otherwise, type 3 fonts will be substituted. I got suitable Type-1 fonts by installing the texlive-fonts-extra package under Ubuntu. Note that T1 *font encoding* has nothing to do with Type 1 fonts! Yes, thank you. I gathered that eventually, but it did take some time to appreciate they are completely different concepts. Is the following correct? Some Type 1 fonts *support* the T1 encoding. Computer Modern is not one of those, so you need some that do. CM-super or Latin Modern are two Type 1 font packages that do support the T1 encoding. To my knowledge, the above is correct. I make no guarantees, though ... Cheers Markus ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
Re: [Orgmode] Re: problem with babel and R
Oh no! It appears this solution may have been too clever for it's own good. Thanks for suggesting :results silent as an additional default header argument, that appears to fixed this weird behavior. I've just pushed up that fix. Cheers -- Eric David Hajage dhaj...@gmail.com writes: One comment: When I execute all the buffer (org-babel-execute-buffer), the result is: #+begin_src R :results output org :exports both library(ascii) options(asciiType = org) ascii(head(esoph, 3)) #+end_src #+results: #+BEGIN_SRC org | | agegp | alcgp | tobgp| ncases | ncontrols | |---+---+---+--++---| | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | | 2 | 25-34 | 0-39g/day | 10-19| 0.00 | 10.00 | | 3 | 25-34 | 0-39g/day | 20-29| 0.00 | 6.00 | #+END_SRC #+results: | | agegp | alcgp |tobgp | ncases | ncontrols | |---+---+---+--++---| | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | | 2 | 25-34 | 0-39g/day |10-19 | 0.00 | 10.00 | | 3 | 25-34 | 0-39g/day |20-29 | 0.00 | 6.00 | Then, the results is repeated twice in the buffer. I understand why, but perhaps the silent option should be turned on by default for org code blocks? David On Thu, Aug 26, 2010 at 23:51, David Hajage dhaj...@gmail.com wrote: Oups, I forgot ob-org in my .emacs... OK, now, really sorry for this. David On Thu, Aug 26, 2010 at 22:20, David Hajage dhaj...@gmail.com wrote: I am so sorry to bother you again, but I must miss something. When I write: #+begin_src R :results output org :exports both library(ascii) options(asciiType = org) ascii(head(esoph)) #+end_src The results is: #+results: #+BEGIN_SRC org | | agegp | alcgp | tobgp| ncases | ncontrols | |---+---+---+--++---| | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | | 2 | 25-34 | 0-39g/day | 10-19| 0.00 | 10.00 | | 3 | 25-34 | 0-39g/day | 20-29| 0.00 | 6.00 | | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | | 6 | 25-34 | 40-79 | 10-19| 0.00 | 7.00 | #+END_SRC OK, the result is surrounded by BEGIN_SRC org/END_SRC. But when I export this, the results is exported as fontified org code. What should I do to have this result interpreted as org markup? David On Thu, Aug 26, 2010 at 18:10, Eric Schulte schulte.e...@gmail.comwrote: Hi, A fix to this issue has been pushed up to the repository. As can now be read in the documentation of the `org-babel-insert-result' function [1], there is now a subtle distinction between :results org and :results raw, where :results org will wrap code block results in a begin_src org block. The block wrapper makes it possible for the entirety of the results to be located and removed by Babel upon code block re-evaluation. In addition a new ob-org.el file has been added providing support for evaluation of Org-mode blocks. With this new language support loaded the above technique becomes a working replacement for :results raw allowing the body of the org code block to be interpreted as inline org-mode text on export. This is done through some non-standard default header arguments described in the recent commit message (see [2]) Best -- Eric Eric Schulte schulte.e...@gmail.com writes: Hi David, #+end_results: foo (or some derivative syntax) sounds like a good idea, I'll add it to the Babel task list. Thanks -- Eric David Hajage dhaj...@gmail.com writes: OK, I understand that using :results org, the results is not altered, there is no post processing. But I don't want a post processing, I would like a way to tell babel where is the begining *and the end* of the output produces by a particular R source block. I think an #+end_results: foo at the end of the output could do the job. Then, the option replace could work in all situation, even if a blank line is inserted somewhere in the org output. No? David On Tue, Aug 17, 2010 at 17:15, Eric Schulte schulte.e...@gmail.com wrote: Hi David, David Hajage dhaj...@gmail.com writes: Thank you very much for your answer. My pleasure But when I run the following code directly into R, no extra lines is added by the ascii function: library(ascii) Le chargement a nécessité le package : proto options(asciiType = org) ascii(head(esoph)) # no extra line | | agegp | alcgp | tobgp| ncases | ncontrols | |---+---+---+--++---| | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | | 2 | 25-34 | 0-39g/day | 10-19| 0.00 | 10.00 | | 3 | 25-34 | 0-39g/day | 20-29| 0.00 | 6.00 | | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | | 5 | 25-34 | 40-79 | 0-9g/day | 0.00
Re: [Orgmode] Re: a bit offtopic, fonts in exported PDF documents
Nick Dokos nicholas.do...@hp.com wrote: the original Knuth fonts were Type3, That, of course, is nonsense: the original Knuth fonts were born before Adobe existed. They were in a format that Knuth invented (PK?). They could just naturally be mapped into Adobe Type3 fonts by dvips, so they could be printed on the original Apple Laser Printer, when that came out. Nick ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
[Orgmode] Re: Bug: export aborts if ':eval query/never' in source code blocks
Eric Schulte schulte.eric at gmail.com writes: I've just pushed up a fix for this issue. For more information see http://eschulte.github.com/babel-dev/DONE-eval-and-noeval.html Wow, that was fast! Thanks very much. Paul ___ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode
