Re: [O] Clicking on URL does convert some special characters

2011-09-08 Thread Jambunathan K




 Hello,

 I just realized a diff in behavior between 3 URL entered in the Org buffer
 with slight differences:

 - http://web.com/file.php?name=Reppath=%2FPROJ%2FSomeFile.txt
   This one is correctly exported, but when clicking on it from the Org buffer,
   the URL opened in the browser is
   http://web.com/file.php?name=Reppath=%252FPROJ%252FSomeFile.txt,
   ^^   ^^
   hence path not found error.

 - [[http://web.com/file.php?name=Reppath=%2FPROJ%2FSomeFile.txt]]
   Works OK in Org and in exported HTML file.

 - 
 [[http://web.com/file.php?name=Reppath=%2FPROJ%2FSomeFile.txt][Description]]
   Idem.

Same as or 99% similar to
https://lists.gnu.org/archive/html/emacs-orgmode/2011-08/msg00513.html

1. When link is entered through C-c C-l org unescapes it. As a result
   the link in the buffer IS DIFFERENT from the entered URL.

   This is a CRITICAL bug.

, In org-insert-link
|
|   (setq link (read-string Link: 
| (org-link-unescape
|  (org-match-string-no-properties 1
`

2. When the Org buffer is exported to html or odt

, In org-html-handle-links
|   (setq path (save-match-data (org-link-unescape   ==
|  (match-string 3 line
|   (setq type (cond
| ((match-end 2) (match-string 2 line))
| ((save-match-data
|(or (file-name-absolute-p path)
|(string-match ^\\.\\.?/ path)))
|  file)
| (t internal)))
|   (setq path (org-extract-attributes (org-link-unescape path))) ==
`

link unescape happens twice. Asymmetry due to One link escape + two link
unescape asymmetry creates problem on export.

Based on historical research, the second org-link-unescape can be
removed. The fact that attributes can be entered at C-c C-l prompt is
largely documented and so the second call to org-link-unescape can
largely be removed.

Jambunathan K.

   
   
   



 Best regards,
   Seb

-- 




Re: [O] Bug: org-table latex export does not honour alignment [7.5]

2011-09-08 Thread Arik Mitschang
Hi Eric,

Thanks for the response. Yes, I'm aware of that, but it seems unnecessary when I
have already used the alignments in the table (and of course if you want HTML to
be the same alignment as latex then you would have to do both). I have a patch
that fixes this issue and behaves the same when alignment is not specified (or
is specified via the attr_latex). This patch is actually against org version
7.7. Not totally sure the best delivery method, but it is short so I include
here. Let me know what you think

Thanks,
-Arik

==

diff -U3 /usr/local/share/emacs/site-lisp/org-latex.el
/Users/arikm/devel/org-latex-table-export-align-fix.el
--- /usr/local/share/emacs/site-lisp/org-latex.el   2011-07-28 
20:35:40.0
+1000
+++ /Users/arikm/devel/org-latex-table-export-align-fix.el  2011-09-08
16:31:32.0 +1000
@@ -1867,9 +1867,11 @@
  (org-table-last-alignment (copy-sequence 
org-table-last-alignment))
  (org-table-last-column-widths (copy-sequence
 org-table-last-column-widths))
+(forced-aligns (org-find-text-property-in-string 
+'org-forced-aligns raw-table))
  fnum fields line lines olines gr colgropen line-fmt align
- caption width shortn label attr floatp placement
-longtblp tblenv tabular-env)
+ alignments caption width shortn label attr floatp
+ placement longtblp tblenv tabular-env)
 (if org-export-latex-tables-verbatim
 (let* ((tbl (concat \\begin{verbatim}\n raw-table
 \\end{verbatim}\n)))
@@ -1944,12 +1946,21 @@
 (when (and (not org-export-latex-tables-column-borders)
(string-match ^\\(|\\)?\\(.+\\)|$ line-fmt))
   (setq line-fmt (match-string 2 line-fmt)))
+   ;; incorporate forced alignment defaulting to right alignment
+   (dotimes (i (length fields))
+ (let ((forced forced-aligns)
+   (a r))
+   (while forced
+ (when (= (car (car forced)) (- (length fields) i))
+   (setq a (cdr (car forced
+ (setq forced (cdr forced)))
+   (push a alignments)))
 ;; format alignment
 (unless align
   (setq align (apply 'format
  (cons line-fmt
-   (mapcar (lambda (x) (if x r l))
-   org-table-last-alignment)
+   (mapcar (lambda (x) x)
+  alignments)
 ;; prepare the table to send to orgtbl-to-latex
 (setq lines
   (mapcar

=






[O] [bug] equations in latex equation environment with leading +/- misinterpreted

2011-09-08 Thread Eric S Fraga
Hello,

the attached org file illustrates a problem with the latex exporter in
which any line within a \begin{equation}...\end{equation} that begins
with a + or - is interpreted as a list item.

It's easy enough to avoid this problem by either reformatting the lines
in question or by enclosing the equation block in a LATEX org block.
Therefore, there's no urgency in addressing this bug.

Thanks,
eric
# -*- coding: utf-8; -*-
#+TITLE: examplebug.org
#+AUTHOR:Eric S Fraga
#+EMAIL: e.fr...@ucl.ac.uk
#+OPTIONS:   H:3 num:t toc:nil \n:nil @:t ::t |:t ^:t -:t f:t *:t :t
#+OPTIONS:   TeX:t LaTeX:t skip:nil d:nil todo:t pri:nil tags:nil

* equation with leading minus sign
  The following equation
  \begin{equation}
  \label{eq:test}
  y = 3 x
  - 5
  + 4
  \end{equation} illustrates a problem in \LaTex export where the
  leading arithmetic operators are interpreted as list entries.

  A snippet of the \LaTeX code generated on export is here:
  #+begin_example
The following equation
  \begin{equation}
  \label{eq:test}
  y = 3 x
\begin{itemize}
\item 5
\item 4
\end{itemize}
  \end{equation} illustrates a problem in \LaTex export where the
  leading arithmetic operators are interpreted as list entries.
  #+end_example

-- 
: Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.50.1
: using Org-mode version 7.7 (release_7.7.261.g2178)


Re: [O] Bug: org-table latex export does not honour alignment [7.5]

2011-09-08 Thread Eric S Fraga
Arik Mitschang arik.mitsch...@gmail.com writes:

 Hi Eric,

 Thanks for the response. Yes, I'm aware of that, but it seems unnecessary 
 when I
 have already used the alignments in the table (and of course if you
 want HTML to

I agree but at least there's a workaround.

 be the same alignment as latex then you would have to do both). I have a patch
 that fixes this issue and behaves the same when alignment is not specified (or
 is specified via the attr_latex). This patch is actually against org version
 7.7. Not totally sure the best delivery method, but it is short so I include
 here. Let me know what you think

I'll leave this for others more capable in patching etc.!
-- 
: Eric S Fraga (GnuPG: 0xC89193D8FFFCF67D) in Emacs 24.0.50.1
: using Org-mode version 7.7 (release_7.7.261.g2178)



Re: [O] HTML export headers

2011-09-08 Thread Aditya Mandayam
i don;t see a defcustim to customize the meta tags generated in the
html header, any clues?

On Sat, Sep 3, 2011 at 04:32, Jambunathan K kjambunat...@gmail.com wrote:
 Aditya Mandayam adity...@gmail.com writes:

 Hello,

 HTML export produces the following header right now, for example:
 Is there anyway to customise this?

 M-x customize-group RET org-export-html RET

 Look at all the options and see whether something interests you.

 Or you can do

 M-: (find-file (locate-library org-html.el))

 and search for the specific string that you are querying for. Look
 around to see where the nearby `defcustom' are.

 Option 2 is likely to fast and efficient.

 Jambunathan K.

 Muchas gracias,

 A



 --




Re: [O] A manuscript on reproducible research introducing org-mode

2011-09-08 Thread Christophe Pouzat

Thomas S. Dye t...@tsdye.com a écritnbsp;:


Christophe Pouzat christophe.pou...@parisdescartes.fr writes:


Dear all,

M. Delescluse, R. Franconville, S. Joucla, T. Lieury and myself (C.
Pouzat) have just put a manuscript entitled: Making
neurophysiological data analysis reproducible. Why and how? on a
pre-print server: http://hal.archives-ouvertes.fr/hal-00591455/fr/
Although the paper has been written for a neurobiological journal, the
reader does not have to be a neuroscientist to read and understand it.
A toy example illustrating the use of org-mode + Babel (with Python
and Octave) takes a fair part of the manuscript. Other tools like R +
Sweave are presented and many more are mentioned.

I thank Eric Schulte for comments on the manuscript and Eric (again)
together with the whole org-mode / Babel community for developing such
a great tool.

Any comment, remark, suggestion on the manuscript is of course welcome.

Christophe




Aloha Christophe,

Thank you for an interesting and useful paper.  I was happy with the
distinction you draw between reproducible analysis and reproducible
research, which certainly applies to my field of archaeology where
unique sites are typically destroyed by the data collection effort.  I
also think the emphasis you place on data preprocessing is just the
right approach; inclusion of the raw data in a reproducible analysis
opens up many possibilities, which must be a benefit to a scientific
community's pursuit of knowledge.

May I offer a suggestion?  Carsten Dominik published the Org Mode 7
Manual last year and it would be nice to see it cited in your paper.

@book{dominik10:_org_mode_refer_manual,
  author =   {Carsten Dominik},
  title ={The Org Mode 7 Reference Manual: Organize Your Life
  with GNU Emacs},
  publisher ={Network Theory Ltd.},
  year = 2010
}

All the best,
Tom
--
Thomas S. Dye
http://www.tsdye.com



Dear Tom,

Thanks for these interesting and positive comments. I apologize for  
forgetting the obvious reference to Carsten's reference manual. I will  
definitely include it in the next version.
I hope that people in my field will come to think the way you do about  
sharing their raw data. I'm just afraid that the way is still long…  
but the goal is reachable. Raw data aside, org-mode is surely a tool  
which should help people experimenting with the reproducible research  
paradigm. As I wrote to Eric (Schulte), M. Delescluse and I wrote a  
first RR manuscript 6 years ago based on R/Sweave. The manuscript  
never got submitted for different reasons, among them, the amount of  
work required to learn R and LaTeX. Learning about org-mode convinced  
me that it would be worth re-activating the project.


Christophe

Most people are not natural-born statisticians. Left to our own  
devices we are not very good at picking out patterns from a sea of  
noisy data. To put it another way, we are all too good at picking out  
non-existent patterns that happen to suit our purposes.

Bradley Efron  Robert Tibshirani (1993) An Introduction to the Bootstrap

--

Christophe Pouzat
Laboratoire de Physiologie Cerebrale
CNRS UMR 8118
UFR biomedicale de l'Universite Paris-Descartes
45, rue des Saints Peres
75006 PARIS
France

tel: +33 (0)1 42 86 38 28
fax: +33 (0)1 42 86 38 30
mobile: +33 (0)6 62 94 10 34
web: http://www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat.html



Re: [O] Use id property as anchor in the Table of Contents

2011-09-08 Thread Pere Quintana Seguí
2011/9/8 Bernt Hansen be...@norang.ca

 Pere Quintana Seguí pquint...@obsebre.es writes:

  Hi,
 
  I'm using Org-mode to publish my website. One of my site's pages has
  a lot of sections and the number of sections is increasing rapidly.
 
  My problem is that the HTML exporter, in the Table of Contents, is
  using the section numbers as anchors. As the section numbers change
  with time, I can't get stable links across versions of the document.
 
  As many of the sections (headings) have id properties, I'd like the
  HTML exporter to use them as anchor for the Table of Contents, when
  available.
 
  Is this possible? I didn't find an answer in the manual.
 
  As an example. This is the document I'm working on:
  http://pere.quintanasegui.com/diccionari-tecnologia.html#sec-2-78
 
  As you can see, section 2.78, called RSS, has the anchor sec-2-78. If
  the anchor was its id 04E3903E-EAF1-499F-98CD-9E3E4BA0806A, the
  link would remain the same in the future. I don't mind if the URL is
  not human readable. Sec-2-78 isn't human readable too.

 Hi Pere,

 You can manually provide CUSTOM_ID properties.  These ids are used in
 the TOC.

 e.g.

 * Reminders
  :PROPERTIES:
  :CUSTOM_ID: Reminders
  :END:

 for

 http://doc.norang.ca/org-mode.html#Reminders

OK, thanks for the tip. That's an option, but unfortunately it is not
automatic.

 I don't know if there is a way to use the ID property automatically.

Unfortunately I don't know lisp, so I can't modify org-mode to provide
this feature :'(

If anyone is willing, I would be very grateful.

Thanks,

Pere



[O] Exporting verbatim html that should not be part of an outline div

2011-09-08 Thread Philipp Möller
Hello,
I'm trying to get a sidebar when exporting an org file to HTML and I'm stuck
with getting my verbatim html into a separate div. The produced html should
look like this

div id=content
   ... outlines ...
/div

div id=sidebar

/div

It doesn't matter to me if the sidebar div is before or after the content
div but it shouldn't be a child of it.

Placing the verbatim HTML after any part of subtree won't work as the html
will become part of this outline div.
Placing the verbatim HTML before the first top level node won't work either,
the div will be part of the content div.

I currently work around this with the :html-postamble and add css for the
postamble div but this is rather ugly and put parts of my document into the
my org-mode configuration.

Another options seems to set the postamble on a per file level but I have no
idea how to do that.

Is that a missing feature or am I overseeing anything?

Cheers,
Philipp


Re: [O] Date-centric Clocktable

2011-09-08 Thread A. Ryan Reynolds
On Sep 7, 2011, at 5:53 PM, Rasmus wrote:
 In my experience this is the kind of table most working class heroes
 will need to hand in.

At my last job this was the sort of table I needed to produce, too.

--
A. Ryan Reynolds







[O] [babel] VC-Log does not run correctly

2011-09-08 Thread Sebastien Vauban
#+TITLE: Last VC Log
#+AUTHOR:Seb Vauban
#+DATE:  2011-09-08
#+LANGUAGE:  en
#+OPTIONS:   num:nil toc:nil

* Abstract

I'm trying to get, from the VC backend (currently SVN in my case), the name
and date of the last committer. Eventually, as well the last log message.

Therefore, I try to use the =vc-log= function in the Library of Babel, copied
back in this buffer, for the sake of simplicity.

When calling =C-c C-e b= on this buffer, I get asked by Emacs:

Buffer has a running process; kill it? (yes or no)

- If I don't say anything, the export process is just hanging in the blue...

- If I say yes, the export process really begins, but there is no vc log
  inserted where I expect it.

- Exactly the same (as if I say yes) happens if I say no: export goes on, but
  no vc log!

What could go wrong here?

* Org Source

#+source: vc-log
#+headers: :var limit=-1
#+headers: :var buf=(buffer-name (current-buffer))
#+begin_src emacs-lisp :exports none
  ;; Most of this code is copied from vc.el vc-print-log
  (require 'vc)
  (when (vc-find-backend-function
 (vc-backend (buffer-file-name (get-buffer buf))) 'print-log)
(let ((limit -1)
  (vc-fileset nil)
  (backend nil)
  (files nil))
  (with-current-buffer (get-buffer buf)
(setq vc-fileset (vc-deduce-fileset t)) ; FIXME: Why t? --Stef
(setq backend (car vc-fileset))
(setq files (cadr vc-fileset)))
  (with-temp-buffer 
(let ((status (vc-call-backend
   backend 'print-log files (current-buffer
  (when (and (processp status)   ; Make sure status is a process
 (= 0 (process-exit-status status))) ; which has not 
terminated
(while (not (eq 'exit (process-status status)))
  (sit-for 1 t)))
  (buffer-string)
#+end_src

Last edited by XXX on XXX

#+call: vc-log()

* HTML Result

#+begin_src html
Last VC Log
Org Source

Last edited by XXX on XXX

Working file: c:/home/sva/ecm.org

Date: 2011-09-08

Author: Seb Vauban
Validate XHTML 1.0
#+end_src

As you can see, there is no vc log at all, well the header of the vc log
buffer:

Working file: c:/home/sva/ecm.org

* Messages buffer

#+begin_src text
Export buffer: 
Exporting...
Running svn status -v ecm.html in foreground...
Running svn status -v ecm.html...OK = 0
Position saved to mark ring, go back with M-x org-mark-ring-goto.
(info) +- Requiring `help-fns'... already loaded [6 times]
executing Emacs-Lisp code block (vc-log)...

(buf (quote ecm.org))

(limit (quote -1))

Running svn log -rHEAD:0 ecm.org in background... done
Working file: c:/home/sva/ecm.org

(info) +- Requiring `help-fns'... already loaded
executing Emacs-Lisp code block...

(results (quote Working file: c:/home/sva/ecm.org
))

Code block evaluation complete.
org-babel-exp processing...
org-babel-exp processing...
Exporting...
Saving file c:/home/sva/ecm.html...
Wrote c:/home/sva/ecm.html
Running svn status -v ecm.html in foreground...
Running svn status -v ecm.html...OK = 0
Exporting... done
#+end_src

Any idea on how to help me going further with this?

Best regards,
  Seb

-- 
Sebastien Vauban




[O] Odd export of a selected tree

2011-09-08 Thread Eythan Weg


Hi,

Consider a  file containing something like:

 * Test :export:
 * Test 2


And now export it, say to ascii format.

I get a buffer containing:  

 1 Test  :export:


Is this expected?

Thanks, Eythan







[O] [babel] Export problem (Wrong type argument: consp, nil)

2011-09-08 Thread Sebastien Vauban
Hi,

#+TITLE: Export problem
#+AUTHOR:Seb Vauban
#+DATE:  2011-09-08
#+LANGUAGE:  en

* Works OK

#+source: square(x=6)
#+begin_src python
return x*x
#+end_src

* Does not work

If there is no value assigned to the code block...

#+source: circle(x)
#+begin_src python
return x*x
#+end_src

... there is no an error when exporting:

#+begin_src text
Debugger entered--Lisp error: (wrong-type-argument consp nil)
  setcdr(nil nil=x)
  (setf (cddr (nth variable-index vars)) (concat (symbol-name ...) = (cdr 
pair)))
  (prog1 (setf (cddr ...) (concat ... = ...)) (incf variable-index))
  (if name (setq vars (append ... ...)) (prog1 (setf ... ...) (incf 
variable-index)))
  (let ((name ...)) (if name (setq vars ...) (prog1 ... ...)))
  (cond ((eql ... ...) (let ... ...)) ((eql ... ...) (setq results ...)) ((eql 
... ...) (when ... ... ... ...)) ((eql ... ...) (setq exports ...)) ((eql ... 
...) (setq tangle ...)) ((eql ... ...) (setq noweb ...)) ((eql ... ...) (setq 
cache ...)) ((eql ... ...) (setq padline ...)) ((eql ... ...) (setq shebang 
...)) ((eql ... ...) (setq comments ...)) (t (setq params ...)))
  (case (car pair) (:var (let ... ...)) (:results (setq results ...)) (:file 
(when ... ... ... ...)) (:exports (setq exports ...)) (:tangle (setq tangle 
...)) (:noweb (setq noweb ...)) (:cache (setq cache ...)) (:padline (setq 
padline ...)) (:shebang (setq shebang ...)) (:comments (setq comments ...)) (t 
(setq params ...)))
  (lambda (pair) (case (car pair) (:var ...) (:results ...) (:file ...) 
(:exports ...) (:tangle ...) (:noweb ...) (:cache ...) (:padline ...) (:shebang 
...) (:comments ...) (t ...)))((:var . x))
  mapc((lambda (pair) (case (car pair) (:var ...) (:results ...) (:file ...) 
(:exports ...) (:tangle ...) (:noweb ...) (:cache ...) (:padline ...) (:shebang 
...) (:comments ...) (t ...))) ((:var . x)))
  (lambda (plist) (mapc (lambda ... ...) plist))(((:var . x)))
  mapc((lambda (plist) (mapc (lambda ... ...) plist)) (((:var . x)) 
((:comments . ) (:shebang . ) (:cache . no) (:padline . ) (:noweb . 
no) (:tangle . no) (:exports . code) (:results . replace) (:padnewline 
. yes) (:hlines . no) (:session . none
  (progn (fset (quote e-merge) (function* ...)) (mapc (lambda ... ...) plists))
  (unwind-protect (progn (fset ... ...) (mapc ... plists)) (if 
--cl-letf-bound-- (fset ... --cl-letf-save--) (fmakunbound ...)))
  (let* ((--cl-letf-bound-- ...) (--cl-letf-save-- ...)) (unwind-protect (progn 
... ...) (if --cl-letf-bound-- ... ...)))
  (letf ((... ...)) (mapc (lambda ... ...) plists))
  (letf* ((... ...)) (mapc (lambda ... ...) plists))
  (flet ((e-merge ... ...)) (mapc (lambda ... ...) plists))
  (let ((results-exclusive-groups ...) (exports-exclusive-groups ...) 
(variable-index 0) params results exports tangle noweb cache vars shebang 
comments padline) (flet (...) (mapc ... plists)) (setq vars (reverse vars)) 
(while vars (setq params ...)) (mapc (lambda ... ...) (quote ...)) params)
  org-babel-merge-params(((:var . x)) ((:comments . ) (:shebang . ) 
(:cache . no) (:padline . ) (:noweb . no) (:tangle . no) (:exports . 
code) (:results . replace) (:padnewline . yes) (:hlines . no) (:session 
. none)))
  (setcar (nthcdr 2 info) (org-babel-merge-params (mapcar ... ...) (nth 2 
info)))
  (setf (nth 2 info) (org-babel-merge-params (mapcar ... ...) (nth 2 info)))
  (progn (setf (nth 2 info) (org-babel-merge-params ... ...)))
  (if (match-string 6) (progn (setf ... ...)))
  (when (match-string 6) (setf (nth 2 info) (org-babel-merge-params ... ...)))
  (progn (setq name (org-babel-clean-text-properties ...)) (when (match-string 
6) (setf ... ...)))
#+end_src

Best regards,
  Seb

-- 
Sebastien Vauban




Re: [O] Odd export of a selected tree

2011-09-08 Thread Thomas S. Dye
eythan...@gmail.com (Eythan Weg) writes:

 Hi,

 Consider a  file containing something like:

  * Test :export:
  * Test 2


 And now export it, say to ascii format.

 I get a buffer containing:  

  1 Test  :export:


 Is this expected?

 Thanks, Eythan

Aloha Eythan,

I believe the answer to your question is yes.  See
http://orgmode.org/worg/org-tutorials/org-latex-export.html#sec-9 for an
explanation. 

All the best,
Tom

-- 
Thomas S. Dye
http://www.tsdye.com



[O] [odt][ANN] Embed links to mathml files as ODF formula

2011-09-08 Thread Jambunathan K

I am pleased to announce (preliminary) support for embedding mathml
files as ODF formulae in odt documents.

Specfically if one provides a link to mathml files as shown below

[[./equation.mathml]]

then the contents of the mathml file is embedded in the exported ODT
document as a ODF formula.

I intend to support link to *.odf files as well. (But this is not
available yet).

Moot point: I am still uncertain how the mathml equations specified in
Org format. For example, does the current approach of using file links
of the form *.mathml (or *.odf) extension sound OK? Should I use a new
mathml:// link type?

Please see the attached Org file for a quick demonstration of what the
current set of changes mean.

1. Update work area
2. Copy mathml.org, formula1.mathml, formula2.mathml to the same
   directory
3. Use C-c C-e O to export.

Currently the equations are embedded as unnumbered, display/paragraph
types.  

IMPORTANT: I am following this mail with a patch to org.el which will
add support for LaTeX-to-MathML conversion using an external
converter.

#+TITLE: mathml.org
#+AUTHOR:Jambunathan K
#+EMAIL: kjambunat...@gmail.com
#+DESCRIPTION:
#+KEYWORDS:
#+LANGUAGE:  en
#+OPTIONS:   H:3 num:t toc:t \n:nil @:t ::t |:t ^:t -:t f:t *:t :t
#+OPTIONS:   TeX:t LaTeX:t skip:nil d:nil todo:t pri:nil tags:not-in-toc

#+EXPORT_SELECT_TAGS: export
#+EXPORT_EXCLUDE_TAGS: noexport
#+LINK_UP:   
#+LINK_HOME: 
#+XSLT:

* Unnumbered Display Equation (Non-captioned)
  [[./formula1.mathml]]


* Un-numbered Display Equation (Captioned)
#+CAPTION: Kinetic Energy
#+LABEL:Equation:1
  [[file:formula2.mathml]]


* COMMENT LaTeX Fragment

#+CAPTION: Kinetic Energy 
#+LABEL:Equation:1

  \begin{equation*}
  e = \frac{1}{2}mv^2
  \end{equation*}
  
?xml version=1.0 encoding=UTF-8?

math xmlns=http://www.w3.org/1998/Math/MathML;
 semantics
  mrow
   mix/mi
   mi mathvariant=normal=/mi
   msqrt
mib/mi
   /msqrt
  /mrow
  annotation encoding=StarMath 5.0x = sqrt b/annotation
 /semantics
/math
?xml version=1.0 encoding=UTF-8?

math xmlns=http://www.w3.org/1998/Math/MathML;
 semantics
  mrow
   mrow
mie/mi
mi mathvariant=normal=/mi
mfrac
 mn1/mn
 mn2/mn
/mfrac
   /mrow
   msup
mi mathvariant=italicmv/mi
mn2/mn
   /msup
  /mrow
  annotation encoding=StarMath 5.0e=1 over 2 mv^2
/annotation
 /semantics
/math


mathml.odt
Description: mathml.odt

-- 


Re: [O] Reminders with alarms

2011-09-08 Thread brian powell
*Recommend using flite (FestivalLite) for text-to-speech: cat
blah.reminder | flite

** Could get really over-the-top and do something like this:

http://gizmodo.com/5522802/twitter-chumby-and-a-cuckoo-bird-walk-into-a-clock?tag=chumby

--you could use the Twitter API and send OrgMode Tweets (complete with
reminders) to your personalized Chumby Cuckoo Clock!!

;-)

P.S. I've used calendar/*Fancy Diary Entries* and appt.el for many
years--works great--I just have it pop up a big blank emacs screen
with the alarm reminder--I usually set it for 15 minutes ahead of the
important reminder:
;;; appt.el --- appointment notification functions.
;; Copyright (C) 1989, 1990, 1994 Free Software Foundation, Inc.
;; Author: Neil Mager ne...@juliet.ll.mit.edu
...
(setq appt-message-warning-time 15)
(setq appt-display-interval 5)

On Wed, Sep 7, 2011 at 11:10 PM, Jude DaShiell jdash...@shellworld.net wrote:
 In debian, there's a cowsay package you can use to make the computer
 speak.  Also packages that produce different types of beeps are
 available.   So far as I now know, they would need to be run as part of
 a bash script or the equivalent within emacs in order to work though.

 On Wed, 7 Sep 2011, Martyn Jago wrote:

 Hi

 Stephen Nelson-Smith sanel...@gmail.com writes:

  Hi there,
 
  I'm just starting to explore orgmode.  I'm an experienced GTD-er (6
  yrs) and have looked with interest at a few articles on using orgmode
  for this.  The one area I can't seem to work out is how to set a
  reminder with an alarm and attach it to an entry.
 
  Suppose I have an entry like:
 
  ** My project
  *** My action 1 :home:
  *** My action 2 :follow up:
 
  I would like to be able to set a reminder that makes a visible (and
  maybe audible) alert - in say 4 hrs, 2 days, at 1530 next wednesday
  etc.  I see that I can set schedules for when to start work, but I've
  been unable to get it to remind me at all.
 
  Any suggestions?
 
  S.

 I use the growl notification system (on MAC) along with todochiku.el for
 simple timer notification out of Emacs. Growl can be set to 'speak' the
 notification (not sure about other sounds).

 todochiku also works with (snarl/libnotify) on other OSs.

 The command todochiku-message allows you to add a notification to a hook
 such as org-timer-done-hook (in your init file)...

 --8---cut here---start-8---
  (defun mj-notify-timer-done ()
   (todochiku-message Title here Further text here
  (todochiku-icon 'bell)))
  (add-hook 'org-timer-done-hook  'mj-notify-timer-done))
 --8---cut here---end---8---

 Regards

 Martyn




 Jude jdash...@shellworld.net
 I love the Pope, I love seeing him in his Pope-Mobile, his three feet
 of bullet proof plexi-glass. That's faith in action folks! You know he's
 got God on his side.
 ~ Bill Hicks





Re: [O] [babel] Collection of code block snippets

2011-09-08 Thread Martyn Jago
Hi Eric

Eric Schulte schulte.e...@gmail.com writes:

 Hi Martyn

 Martyn Jago martyn.j...@btinternet.com writes:

 Hi Eric

 Eric Schulte schulte.e...@gmail.com writes:

 [...]


 I just made three small changes to the testing framework so it is now
 possible to run the test suite in batch mode with the following.

 emacs -Q --batch -l path/to/org/testing/org-test.el --eval (setq
 org-confirm-babel-evaluate nil) -f org-test-run-all-tests

 Great idea - unfortunately its not quite working for me since I get
 four failing tests. In addition I have no (easy) indication of which
 four tests are failing since the backtrace is just the output of the
 tests working (no backtrace for failed tests).


 I'm getting four failing tests as well when I start Emacs with the -Q
 option and no failing tests when I run it with my configuration loaded.
 I will dig through my personal config, find out what options are making
 these tests pass, and adjust the tests appropriately so that they all
 pass with no personal config.


 This is what I like about the ert-run-batch commands - you get an
 indication and summary of tests passed, and the backtrace of any
 failures.

 Also, I mentioned that ert-batch.el and ert-run.el are not part of
 Emacs. This is actually because their contents were merged into ert.el
 within Emacs.


 Thanks for mentioning the batch ert commands, I was not aware of their
 existence.  I've added a batch version of org-test-run-all-tests to the
 org-mode test suite, the following should now be sufficient to run the
 test suite from the command line with nicer output.

 #+begin_src sh
   emacs -Q --batch -l path/to/org/testing/org-test.el \
   --eval (setq org-confirm-babel-evaluate nil) \
   -f org-test-run-all-tests
 #+end_src

Thats great - I'll try it out when I get a chance.

I have written a few more tests for inline source blocks execution with
org-ctrl-c-ctrl-c (not extensive by any means). The last two [:results
scaler] and [:results verbatim] surprised me slightly since the manual
suggests to me that they would be identical (although verbatim does what
I would expect).

,
|  - scalar, verbatim The results should be interpreted literally—they
|will not be converted into a table. The results will be inserted into
|the Org-mode buffer as quoted text. E.g., :results value verbatim. 
`

--8---cut here---start-8---
src_src_emacs-lisp[ :results scalar ]{ \x\ } =x=
src_src_emacs-lisp[ :results verbatim ]{ \x\ } =x=
--8---cut here---end---8---

From b0ea0a6e96188c8ee6861d6cbd04182eb966dbe3 Mon Sep 17 00:00:00 2001
From: Martyn Jago martyn.j...@btinternet.com
Date: Thu, 8 Sep 2011 16:50:26 +0100
Subject: [PATCH] * testing/lisp/test-ob.el: More tests for inline source blocks
   execution via org-ctrl-c-ctrl-c

---
 testing/lisp/test-ob.el |  172 +++
 1 files changed, 172 insertions(+), 0 deletions(-)

diff --git a/testing/lisp/test-ob.el b/testing/lisp/test-ob.el
index e0f7c65..9735bd8 100644
--- a/testing/lisp/test-ob.el
+++ b/testing/lisp/test-ob.el
@@ -236,6 +236,178 @@
   (should-not (org-babel-get-inline-src-block-matches))
 )))
 
+(ert-deftest test-org-babel/inline-src_blk-default-results-replace-line-1 ()
+  (with-temp-buffer
+
+;; src_ at bol line 1...
+(let ((test-line src_sh{echo 1}))
+  (insert test-line)
+  (should-error (org-ctrl-c-ctrl-c))
+  (goto-char (point-min)) (org-ctrl-c-ctrl-c)
+  (should (string=
+   	   (concat test-line  =1=)
+   	   (buffer-substring-no-properties (point-at-bol) (point-at-eol
+  (forward-char) (org-ctrl-c-ctrl-c)
+  (should (string=
+   	   (concat test-line  =1= =1=)
+   	   (buffer-substring-no-properties (point-at-bol) (point-at-eol
+  (re-search-forward 1})
+  (should-error (org-ctrl-c-ctrl-c))
+  (backward-char) ;; last char of block body
+  (org-ctrl-c-ctrl-c)
+  (should (string=
+   	   (concat test-line  =1= =1= =1=)
+   	   (buffer-substring-no-properties (point-at-bol) (point-at-eol)
+
+;; src_ follows space line 1...
+(let ((test-line  src_emacs-lisp{ 1 }))
+  (beginning-of-line)
+  (insert (concat test-line \n))
+  (goto-char (point-min))
+  (should-error (org-ctrl-c-ctrl-c))
+  (forward-char) (org-ctrl-c-ctrl-c) 
+  (should (string=
+	   (concat test-line  =1=)
+	   (buffer-substring-no-properties (point-at-bol) (point-at-eol
+  (re-search-forward { 1 ) (org-ctrl-c-ctrl-c)
+  (should (string=
+	   (concat test-line  =1= =1=)
+	   (buffer-substring-no-properties (point-at-bol) (point-at-eol
+  (forward-char)
+  (should-error (org-ctrl-c-ctrl-c))
+  )))
+
+(ert-deftest test-org-babel/inline-src_blk-default-results-replace-line-2 ()
+  (with-temp-buffer
+
+;; src_ at bol line 2...
+(let ((test-line  src_emacs-lisp{ 

[O] Mathjax export taking into account custom macros

2011-09-08 Thread Christian Straßer
Hello,

there is an asymmetry between the html-export of latex-formulas by
means of dvipng on the one hand and by means of mathjax on the other
hand. The asymmetry concerns the handling of information provided by
the
#+LaTeX_HEADER:
parameter. The parameter is taken into account when exporting by means
of dvipng, but not when exporting by means of mathjax.

Let me give a small example:

*Scenario 1*

Say we have a file test.org which looks as follows:

#+OPTIONS: LaTeX:dvipng
#+LaTeX_HEADER: \newcommand{\vd}{\vdash}
* Header 1
$\vd$

Now exporting this file into html produces a png image with the |- symbol.

*Scenario 2*

Now our file test.org looks as follows:

#+OPTIONS: LaTeX:t
#+LaTeX_HEADER: \newcommand{\vd}{\vdash}
* Header 1
$\vd$

[the only change is in line 1]
Exporting this file produces a html file with \vd in red (meaning
mathjax doesn't have a subroutine dealing with the command \vd).

I am not sure if this is the intended behavior. I personally would
prefer if the mathjax export would take into account the commands
specified in the LaTeX_HEADER.

A similar scenario we get with respect to the
org-export-latex-default-packages-alist. I have a small style package
with all my custom definitions that is listed in
org-export-latex-default-packages-alist (with snippet toggled to 't').
Again the LaTeX:dvipng option takes into account the package while the
mathjax export ignores it.

For the example illustrated in the two examples I used a minimal setup
with the following .emacs file:
(setq load-path (cons ~/.emacs.d/org-mode/lisp load-path))
(setq load-path (cons ~/.emacs.d/org-mode/contrib/lisp load-path))
(require 'org-install)

The org-mode is an up-to-date clone from git:
M-x org-version returns:
Org-mode version 7.7 (release_7.7.264.gbe69)

Thanks!

Best,

Christian



Re: [O] [babel] Export problem (Wrong type argument: consp, nil)

2011-09-08 Thread Eric Schulte
Hi Seb,

All variables must be given a default value, which is why it is an error
to write a code block like the following.

#+source: circle(x)
#+begin_src python
return x*x
#+end_src

I've just pushed up a change which provides a better error message in
this case.

Best -- Eric

Sebastien Vauban wxhgmqzgw...@spammotel.com writes:

 Hi,

 #+TITLE: Export problem
 #+AUTHOR:Seb Vauban
 #+DATE:  2011-09-08
 #+LANGUAGE:  en

 * Works OK

 #+source: square(x=6)
 #+begin_src python
 return x*x
 #+end_src

 * Does not work

 If there is no value assigned to the code block...

 #+source: circle(x)
 #+begin_src python
 return x*x
 #+end_src

 ... there is no an error when exporting:

 #+begin_src text
 Debugger entered--Lisp error: (wrong-type-argument consp nil)
   setcdr(nil nil=x)
   (setf (cddr (nth variable-index vars)) (concat (symbol-name ...) = (cdr 
 pair)))
   (prog1 (setf (cddr ...) (concat ... = ...)) (incf variable-index))
   (if name (setq vars (append ... ...)) (prog1 (setf ... ...) (incf 
 variable-index)))
   (let ((name ...)) (if name (setq vars ...) (prog1 ... ...)))
   (cond ((eql ... ...) (let ... ...)) ((eql ... ...) (setq results ...)) 
 ((eql ... ...) (when ... ... ... ...)) ((eql ... ...) (setq exports ...)) 
 ((eql ... ...) (setq tangle ...)) ((eql ... ...) (setq noweb ...)) ((eql ... 
 ...) (setq cache ...)) ((eql ... ...) (setq padline ...)) ((eql ... ...) 
 (setq shebang ...)) ((eql ... ...) (setq comments ...)) (t (setq params ...)))
   (case (car pair) (:var (let ... ...)) (:results (setq results ...)) (:file 
 (when ... ... ... ...)) (:exports (setq exports ...)) (:tangle (setq tangle 
 ...)) (:noweb (setq noweb ...)) (:cache (setq cache ...)) (:padline (setq 
 padline ...)) (:shebang (setq shebang ...)) (:comments (setq comments ...)) 
 (t (setq params ...)))
   (lambda (pair) (case (car pair) (:var ...) (:results ...) (:file ...) 
 (:exports ...) (:tangle ...) (:noweb ...) (:cache ...) (:padline ...) 
 (:shebang ...) (:comments ...) (t ...)))((:var . x))
   mapc((lambda (pair) (case (car pair) (:var ...) (:results ...) (:file ...) 
 (:exports ...) (:tangle ...) (:noweb ...) (:cache ...) (:padline ...) 
 (:shebang ...) (:comments ...) (t ...))) ((:var . x)))
   (lambda (plist) (mapc (lambda ... ...) plist))(((:var . x)))
   mapc((lambda (plist) (mapc (lambda ... ...) plist)) (((:var . x)) 
 ((:comments . ) (:shebang . ) (:cache . no) (:padline . ) (:noweb . 
 no) (:tangle . no) (:exports . code) (:results . replace) 
 (:padnewline . yes) (:hlines . no) (:session . none
   (progn (fset (quote e-merge) (function* ...)) (mapc (lambda ... ...) 
 plists))
   (unwind-protect (progn (fset ... ...) (mapc ... plists)) (if 
 --cl-letf-bound-- (fset ... --cl-letf-save--) (fmakunbound ...)))
   (let* ((--cl-letf-bound-- ...) (--cl-letf-save-- ...)) (unwind-protect 
 (progn ... ...) (if --cl-letf-bound-- ... ...)))
   (letf ((... ...)) (mapc (lambda ... ...) plists))
   (letf* ((... ...)) (mapc (lambda ... ...) plists))
   (flet ((e-merge ... ...)) (mapc (lambda ... ...) plists))
   (let ((results-exclusive-groups ...) (exports-exclusive-groups ...) 
 (variable-index 0) params results exports tangle noweb cache vars shebang 
 comments padline) (flet (...) (mapc ... plists)) (setq vars (reverse vars)) 
 (while vars (setq params ...)) (mapc (lambda ... ...) (quote ...)) params)
   org-babel-merge-params(((:var . x)) ((:comments . ) (:shebang . ) 
 (:cache . no) (:padline . ) (:noweb . no) (:tangle . no) (:exports . 
 code) (:results . replace) (:padnewline . yes) (:hlines . no) 
 (:session . none)))
   (setcar (nthcdr 2 info) (org-babel-merge-params (mapcar ... ...) (nth 2 
 info)))
   (setf (nth 2 info) (org-babel-merge-params (mapcar ... ...) (nth 2 info)))
   (progn (setf (nth 2 info) (org-babel-merge-params ... ...)))
   (if (match-string 6) (progn (setf ... ...)))
   (when (match-string 6) (setf (nth 2 info) (org-babel-merge-params ... ...)))
   (progn (setq name (org-babel-clean-text-properties ...)) (when 
 (match-string 6) (setf ... ...)))
 #+end_src

 Best regards,
   Seb

-- 
Eric Schulte
http://cs.unm.edu/~eschulte/



Re: [O] [babel] Collection of code block snippets

2011-09-08 Thread Eric Schulte
Hi Martyn,


 I have written a few more tests for inline source blocks execution with
 org-ctrl-c-ctrl-c (not extensive by any means).

Thanks for adding these tests, I get 6 failures all with the same error
[1], is that intentional?  If not would you mind taking another look at
this patch?

 The last two [:results scaler] and [:results verbatim] surprised me
 slightly since the manual suggests to me that they would be identical
 (although verbatim does what I would expect).

 ,
 |  - scalar, verbatim The results should be interpreted literally—they
 |will not be converted into a table. The results will be inserted into
 |the Org-mode buffer as quoted text. E.g., :results value verbatim. 
 `

 src_src_emacs-lisp[ :results scalar ]{ \x\ } =x=
 src_src_emacs-lisp[ :results verbatim ]{ \x\ } =x=

interesting, I get the same results for both scalar and verbatim...

  src_emacs-lisp[ :results scalar ]{ x } =x=
  src_emacs-lisp[ :results verbatim ]{ x } =x=

Notice that I had to edit your pasted example for it to run w/o error on
my system.

Best -- Eric

Footnotes: 
[1]  new test results
,
| Selector: \\(org\\|ob\\)
| Passed: 103
| Failed: 6 (6 unexpected)
| Total:  109/109
| 
| Started at:   2011-09-08 11:39:15-0600
| Finished.
| Finished at:  2011-09-08 11:39:20-0600
| 
| 
..F..F...
| 
| F test-org-babel/inline-src_blk-default-results-replace-line-1
| (error C-c C-c can do nothing useful at this location)
| 
| F test-org-babel/inline-src_blk-results-file
| (error C-c C-c can do nothing useful at this location)
| 
| F test-org-babel/inline-src_blk-results-raw
| (error C-c C-c can do nothing useful at this location)
| 
| F test-org-babel/inline-src_blk-results-scaler
| (error C-c C-c can do nothing useful at this location)
| 
| F test-org-babel/inline-src_blk-results-silent
| (error C-c C-c can do nothing useful at this location)
| 
| F test-org-babel/inline-src_blk-results-verbatim
| (error C-c C-c can do nothing useful at this location)
| 
| 
`


-- 
Eric Schulte
http://cs.unm.edu/~eschulte/



Re: [O] [babel] Collection of code block snippets

2011-09-08 Thread Martyn Jago
Hi Eric

Eric Schulte schulte.e...@gmail.com writes:

 Hi Martyn,


 I have written a few more tests for inline source blocks execution with
 org-ctrl-c-ctrl-c (not extensive by any means).

 Thanks for adding these tests, I get 6 failures all with the same error
 [1], is that intentional?  If not would you mind taking another look at
 this patch?

 The last two [:results scaler] and [:results verbatim] surprised me
 slightly since the manual suggests to me that they would be identical
 (although verbatim does what I would expect).

 ,
 |  - scalar, verbatim The results should be interpreted literally—they
 |will not be converted into a table. The results will be inserted into
 |the Org-mode buffer as quoted text. E.g., :results value verbatim. 
 `

 src_src_emacs-lisp[ :results scalar ]{ \x\ } =x=
 src_src_emacs-lisp[ :results verbatim ]{ \x\ } =x=

 interesting, I get the same results for both scalar and verbatim...

Yes my bad - I have a problem with the spelling of scalar - they are the
same here now.


   src_emacs-lisp[ :results scalar ]{ x } =x=
   src_emacs-lisp[ :results verbatim ]{ x } =x=

 Notice that I had to edit your pasted example for it to run w/o error on
 my system.

Apologies, my hasty cut/pasting from tests to gnus.

The only way I can generate any failures is by using your older
command line script - even using your selector \\(org\\|ob\\) passes
everything here. Interestingly, using my test-init.el based script with
Emacs -batch -Q produces no errors either. I'll investigate further.

Best, Martyn





[O] [PATCH] org.el: Add support for LaTeX to MathML conversion

2011-09-08 Thread Jambunathan K

 IMPORTANT: I am following this mail with a patch to org.el which will
 add support for LaTeX-to-MathML conversion using an external
 converter.

MathToWeb is available from
http://www.mathtoweb.com/cgi-bin/mathtoweb_home.pl

Your .emacs should look something like this.

(custom-set-variables
 '(org-latex-to-mathml-convert-command java -jar %j -unicode -force -df %o %I)
 '(org-latex-to-mathml-jar-file ~/tmp-odt/mathtoweb.jar))

I am attaching odt files used with both dvipng and mathml options. The
latex-mathml.odt reports an error on one of the $$ $$ equations.

Note to reviewers: Can someone enhance the patch so that
`org-latex-src-embed-type can take all the various anchors that a latex
equation could use - inline, display-unnumbered, display-numbered, what
else?

Note to the users:
1. You need to not only apply this patch but also pull from the repo for
   full support.
2. Currently there is NO support for numbered and displayed equations
   which go like this

   x = y (1)
   y = z (2)

From 762bffe1fc11d28502d6842c9b7d0049442ee2ef Mon Sep 17 00:00:00 2001
From: Jambunathan K kjambunat...@gmail.com
Date: Fri, 9 Sep 2011 00:14:59 +0530
Subject: [PATCH] org.el: Add support for LaTeX to MathML conversion

* lisp/org.el (org-latex-to-mathml-jar-file)
(org-latex-to-mathml-convert-command): New user-customizable
variables.
(org-format-latex-mathml-available-p, org-create-math-formula)
(org-format-latex-as-mathml): New functions.
(org-format-latex): Add a new local variable block-type that
notes the nature of the equation - inline or display.
Associate it's value to `org-latex-src-embed-type' property of
dvipng links.  Add mathml as new processing type.
---
 lisp/org.el |  159 +--
 1 files changed, 154 insertions(+), 5 deletions(-)

diff --git a/lisp/org.el b/lisp/org.el
index d63b854..b907338 100644
--- a/lisp/org.el
+++ b/lisp/org.el
@@ -16507,11 +16507,11 @@ Some of the options can be changed using the variable
 	  (plist-get (org-infile-export-plist) :latex-header-extra))
 	 (cnt 0) txt hash link beg end re e checkdir
 	 executables-checked string
-	 m n block linkfile movefile ov)
+	 m n block-type block linkfile movefile ov)
 ;; Check the different regular expressions
 (while (setq e (pop re-list))
-  (setq m (car e) re (nth 1 e) n (nth 2 e)
-	block (if (nth 3 e) \n\n ))
+  (setq m (car e) re (nth 1 e) n (nth 2 e) block-type (nth 3 e)
+	block (if block-type \n\n ))
   (when (member m matchers)
 	(goto-char (point-min))
 	(while (re-search-forward re nil t)
@@ -16540,7 +16540,7 @@ Some of the options can be changed using the variable
 '(org-protected t
 		(add-text-properties (match-beginning n) (match-end n)
  '(org-protected t
-	 ((or (eq processing-type 'dvipng) t)
+	 ((eq processing-type 'dvipng)
 	  ;; Process to an image
 	  (setq txt (match-string n)
 		beg (match-beginning n) end (match-end n)
@@ -16596,7 +16596,156 @@ Some of the options can be changed using the variable
 		(insert (org-add-props link
 			(list 'org-latex-src
   (replace-regexp-in-string
-   \  txt)
+   \  txt)
+  'org-latex-src-embed-type
+  (if block-type 'paragraph 'character))
+	 ((eq processing-type 'mathml)
+	  ;; Process to MathML
+	  (unless executables-checked
+		(unless (save-match-data (org-format-latex-mathml-available-p))
+		  (error LaTeX to MathML converter not configured))
+		(setq executables-checked t))
+	  (setq txt (match-string n)
+		beg (match-beginning n) end (match-end n)
+		cnt (1+ cnt))
+	  (if msg (message msg cnt))
+	  (goto-char beg)
+	  (delete-region beg end)
+	  (insert (org-format-latex-as-mathml
+		   txt block-type prefix dir)))
+	 (t
+	  (error Unknown conversion type %s for latex fragments
+		 processing-type)
+
+(defcustom org-latex-to-mathml-jar-file nil
+  Value of\%j\ in `org-latex-to-mathml-convert-command'.
+Use this to specify additional executable file say a jar file.
+
+When using MathToWeb as the converter, specify the full-path to
+your mathtoweb.jar file.
+  :group 'org-latex
+  :type '(choice
+	  (const :tag None nil)
+	  (file :tag JAR file :must-match t)))
+
+(defcustom org-latex-to-mathml-convert-command nil
+  Command to convert LaTeX fragments to MathML.
+Replace format-specifiers in the command as noted below and use
+`shell-command' to convert LaTeX to MathML.
+%j: 	Executable file in fully expanded form as specified by
+ 	`org-latex-to-mathml-jar-file'.
+%I: Input LaTeX file in fully expanded form
+%o: Output MathML file
+This command is used by `org-create-math-formula'.
+
+When using MathToWeb as the converter, set this to
+\java -jar %j -unicode -force -df %o %I\.
+  :group 'org-latex
+  :type '(choice
+	  (const :tag None nil)
+	  (string :tag \nShell command)))
+
+(defun org-format-latex-mathml-available-p ()

Re: [O] [babel] Collection of code block snippets

2011-09-08 Thread Martyn Jago
Hi Eric

Martyn Jago martyn.j...@btinternet.com writes:

 Hi Eric

 Eric Schulte schulte.e...@gmail.com writes:

 Hi Martyn,


 I have written a few more tests for inline source blocks execution with
 org-ctrl-c-ctrl-c (not extensive by any means).

 Thanks for adding these tests, I get 6 failures all with the same error
 [1], is that intentional?  If not would you mind taking another look at
 this patch?

I reverse-engineered my =test-init.el= script using a call to
=org-test-run-batch-tests= and from that worked out why your script was
breaking tests. 

One problem on my system is that emacs was using the wrong org mode
since the newer org location wasn't known about. Also, the languages,
emacs-lisp and sh need to be switched on (I thought emacs-lisp was on by
default)?

Now all tests pass.

My minimised script...

--8---cut here---start-8---
(let ((org-dir ~/org-mode/))
  (add-to-list 'load-path (concat org-dir lisp))
  (add-to-list 'load-path (concat org-dir testing))
  (require 'org-test)
  (setq org-confirm-babel-evaluate nil)
  (org-babel-do-load-languages
   'org-babel-load-languages '((emacs-lisp . t) (sh . t)))
  (org-test-run-batch-tests))
--8---cut here---end---8---

Called by...

--8---cut here---start-8---
emacs -Q -script ~/orgmode/testing/test-init.el
--8---cut here---end---8---

Your modified script...

--8---cut here---start-8---
emacs -Q -batch -L ~/org-mode/lisp ~/org-mode/testing -l org-test.el \
-eval (progn(setq org-confirm-babel-evaluate nil) \
(org-babel-do-load-languages 'org-babel-load-languages '((emacs-lisp \
. t) (sh . t -f org-test-run-batch-tests
--8---cut here---end---8---

I've fixed my typos in test-ob.el below.

Best, Martyn

From a444094303e48cbb5f4027e83f8dcf60d240204b Mon Sep 17 00:00:00 2001
From: Martyn Jago martyn.j...@btinternet.com
Date: Thu, 8 Sep 2011 22:34:38 +0100
Subject: [PATCH] * testing/lisp/test-ob.el: Fixed typo

---
 testing/lisp/test-ob.el |6 +++---
 1 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/testing/lisp/test-ob.el b/testing/lisp/test-ob.el
index 9735bd8..1f04c5b 100644
--- a/testing/lisp/test-ob.el
+++ b/testing/lisp/test-ob.el
@@ -390,13 +390,13 @@
   (should (string= (concat test-line  [[file:~/test-file]])
 		   (buffer-substring-no-properties (point-min) (point-max)))
 
-(ert-deftest test-org-babel/inline-src_blk-results-scaler ()
+(ert-deftest test-org-babel/inline-src_blk-results-scalar ()
   (with-temp-buffer
 
-(let ((test-line src_emacs-lisp[ :results scaler ]{ \x\  }))
+(let ((test-line src_emacs-lisp[ :results scalar ]{ \x\  }))
   (insert test-line)
   (goto-char (point-min)) (org-ctrl-c-ctrl-c)
-  (should (string= (concat test-line  =x=)
+  (should (string= (concat test-line   =\x\=)
 		   (buffer-substring-no-properties (point-min) (point-max)))
 
 (ert-deftest test-org-babel/inline-src_blk-results-verbatim ()
-- 
1.7.3.4



[...]



Re: [O] Odd export of a selected tree

2011-09-08 Thread Eythan Weg

t...@tsdye.com (Thomas S. Dye)
Thu, 08 Sep 2011 05:29:38 -1000

   eythan...@gmail.com (Eythan Weg) writes:
   
Hi,
   
Consider a  file containing something like:
   
 * Test :export:
 * Test 2
   
   
And now export it, say to ascii format.
   
I get a buffer containing:  
   
 1 Test  :export:
   
   
Is this expected?
   
Thanks, Eythan
   
   Aloha Eythan,
   
   I believe the answer to your question is yes.  See
   http://orgmode.org/worg/org-tutorials/org-latex-export.html#sec-9 for an
   explanation. 
   
   All the best,
   Tom
   
   -- 
   Thomas S. Dye
   http://www.tsdye.com

Thanks.  I read the link.  Still, do you mean that the tag :export: is
expected to be exported in addition to the selected tree?  

Eythan  






Re: [O] Change in org-babel with indenting code blocks?

2011-09-08 Thread John Wiegley
 Nick Dokos nicholas.do...@hp.com writes:

 Perhaps Seb Vauban identified the bug correctly (earlier in this thread): he
 pointed to the thread entitled Extra space inserted in repeated task's date
 line - see

  http://thread.gmane.org/gmane.emacs.orgmode/45623

In the current Org (updated today), this problem now affects *all* non-drawer
text in entries, including code blocks, lists, and log entries!  This is makes
entry shifting completely useless to me.  What do I need to revert to make it
work again?

Thanks,
  John



Re: [O] Change in org-babel with indenting code blocks?

2011-09-08 Thread John Wiegley
 John Wiegley jwieg...@gmail.com writes:

 In the current Org (updated today), this problem now affects *all*
 non-drawer text in entries, including code blocks, lists, and log entries!
 This is makes entry shifting completely useless to me.  What do I need to
 revert to make it work again?

Actually, it even worse: This affects all refiled blocks as well, resulting in
the indentation of the refiled entry being the same as the original level it
was captured in.  I just went through my entire Org file by eye and found a
huge number of indentation problems resulting from this bug.  Help!

John



Re: [O] [PATCH 0/5] loop over headlines in active region

2011-09-08 Thread David Maus
At Wed, 07 Sep 2011 21:34:41 +0200,
Štěpán Němec wrote:
 
 On Sun, 28 Aug 2011 15:57:19 +0200
 David Maus wrote:
 
  At Thu, 25 Aug 2011 12:08:42 +0200,
  Štěpán Němec wrote:
  
  On Thu, 25 Aug 2011 06:25:29 +0200
  David Maus wrote:
  
   As for the macro: What stop me to implement a macro for the generic
   operation is that for now the macro would depend on the global
   customization variable. That's not a problem per se but according to
   my readings about macros (mostly in context of Common Lisp, but that
   shouldn't matter) it should be considered bad style.
  
  Could you expand on this a bit? As far as I can tell, you obviously
  shouldn't depend on a customisation variable at macro expansion time,
  but I don't see how depending on it at run time is any different from a
  function doing the same.
  
 
  At expansion time the macro performs a transformation of the lisp at
  the place where the macro is used. At runtime the code of the expanded
  macro runs in the scope of the function where the macro was expanded
  into. A macro that uses a variable inside the expanded code that is
  not under its control (e.g. part of the argument list or gensym'd) is
  prone to introduce a bug caused by expanding the macro in an
  environment where this variable is not bound or used with a different
  semantics.
 
  In this particular case this should not be a problem indeed because we
  use a global dynamically scoped customization variable. Thus,
  whereever we would use the macro we can be sure the variable in the
  macro expansion is bound and carries the same meaning.
 
 So your what stop me to implement a macro argument is bogus, isn't it?
 I can't really comment on whether using a macro or not is the right
 thing here, but it seems to me you shouldn't base the decision on an
 invalid argument (IOW, from the fact that you even felt the need to
 explain why you didn't use a macro to begin with, it would appear to be
 the case that you would have preferred the macro way).

One of the things Ford Prefect had always found hardest to understand
about humans was their habit of continually stating and repeating the
very very obvious, as in /It's a nice day/, or /You're very tall/, or
/Oh dear you seem to have fallen down a thirty-foot well, are you all
right?/ At first Ford had formed a theory to account for this strange
behavior. If human beings don't keep exercising their lips, he
thought, their mouths probably seize up.

After a few months' consideration and observation he abandoned this
theory in favor of a new one. If they don't keep on exercising their
lips, he thought, their brains start working. After a while he
abandoned this one as well as being obstructively cynical and decided
he quite liked human beings after all, but he always remained
desperately worried about the terrible number of things they didn't
know about.

  Douglas Adams, The Hitchiker's Guide to the Galaxy
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