Re: [O] Problem with babel and R + lattice
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
On 08/03/12 21:52, John Hendy wrote:
> Drat. I meant to add that when I run the code exactly as I have it from R
> directly, it works. I
> literally copy and paste my org-mode babel block code line by line into a
> terminal and obtain
> the proper output via tikz. *That's* the perplexing part. What would be
> working directly from R
> and not from Org-mode?
>
> For reference, I've generated plenty of stuff just like this via
> org-mode/babel. Come to think
> of it, even another lattice plot.
>
> Not sure how to pinpoint what's goofy about this specific plot.
>
> John
>
> On Thu, Mar 8, 2012 at 2:40 PM, John Hendy wrote:
>> I have an R block like so:
>>
>> #+begin_src R
>>
>> library(lattice) library(tikzDevice)
>>
>> =bunch of code=
>>
>> barchart(side$name~side$x2,groups=side$type,horiz=T,
>> xlim=c(0,0.75),col=c("lightblue","yellow"),xlab="Product Performance
>> (2-box)")
>>
>> dev.off() tools::texi2dvi("bar-2b.tex",pdf=T)
>>
>> #+end_src
>>
>> The resultant tex file is empty where the tikz code should be and texi2dvi
>> fails. Any
>> suggestions? If I change my plot to base graphics with barplot, it works.
>> I'm thinking this
>> is a lattice/babel issue?
As with ggplot, you have to print your plot (if I remember correctly), i.e:
print(barchart(...))
Cheers,
Rainer
>>
>>
>> Thanks for any input, John
>
- --
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
UCT), Dipl. Phys.
(Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D):+49 - (0)3 21 21 25 22 44
email: rai...@krugs.de
Skype: RMkrug
-BEGIN PGP SIGNATURE-
Version: GnuPG v1.4.11 (GNU/Linux)
Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
iEYEARECAAYFAk9ZwlcACgkQoYgNqgF2egqMewCfar+JxC9uV9p1O2IYVVYcqyeM
7/4AnRLp8gYqSDe/74D9helafqNR5Vgt
=aDVb
-END PGP SIGNATURE-
Re: [O] Org-mode workshop: has anyone done this already?
Eric Schulte gmx.com> writes: > Later this month I will be giving a talk on the use of code blocks in > Org-mode. I haven't yet begun preparing the slides, but when I do they > will live at https://github.com/eschulte/babel-presentation. > > Cheers, > Great ! Where will it take place ? Is it possible to attend ? Will you be video recording it ? Best Regards, Bernard
Re: [O] Bug: 3 bugs and 2 proposals on ascii/html export [7.8.03]
Hi Bastien and Mathias, Bastien wrote: >> As default, all level 1 headlines are underlined by - characters and level >> 2 headlines with =. Wouldn't it be more logical the other way round: the >> lower the level, the more important the headline and hence the "bigger" its >> underlining? (Of course the user can change the variable >> org-export-ascii-underline.) > > Unless many users think this is illogical, I won't change the default. To be honest, fixing this was on my (huge) todo list: I've always found it disturbing to have more imposing level-2 titles than the level-1 titles. For me, it makes a lot of sense to invert both, as Mathias is suggesting it. Best regards, Seb -- Sebastien Vauban
Re: [O] worg latex example "11 Styling the Frontmatter"
>> On Thu, 08 Mar 2012 18:20:10 -1000, Thomas S Dye said: > Hi Myles, Thanks for making me look more closely at this. There are > two things: > 1) #+BEGIN_abstract ... #+END_abstract requires org-special-blocks. > So, > 2) The abstract text ends up in the title because there is no export > option template at the top of your org file. With point at the > start of the buffer, C-c C-e t. That's solved it, thanks very much! Turn out that the whole export option template is not needed; just the #+TITLE: piece. Myles
Re: [O] Problem loading a symlink'ed file in Emacs batch
Hi Achim, Achim Gratz wrote: > If you are using NTemacs rather than the one supplied by Cygwin it simply > doesn't know about symlinks. I was using an official GNU Emacs binary for Windows (found on http://alpha.gnu.org/gnu/emacs/windows/). Anyway, switching to Cygwin Emacs does resolve the symlink problem. Thanks a lot for your answer! Best regards, Seb -- Sebastien Vauban
Re: [O] Bug: 3 bugs and 2 proposals on ascii/html export [7.8.03]
> > > > For me, it makes a lot of sense to invert both, as Mathias is suggesting > it. > > +1 It would conform more to a sort of "standard" that way, (see http://en.wikipedia.org/wiki/Lightweight_markup_language#Section_headers) > Best regards, > Seb > > -- > Sebastien Vauban > > > /Gustav
Re: [O] Org-mode workshop: has anyone done this already?
Bernard H. writes: > Eric Schulte gmx.com> writes: > >> Later this month I will be giving a talk on the use of code blocks in >> Org-mode. I haven't yet begun preparing the slides, but when I do they >> will live at https://github.com/eschulte/babel-presentation. >> >> Cheers, >> > > Great ! > Where will it take place ? On March 25th in Albuquerque New Mexico at the monthly meeting of the Albuquerque Lisp/Scheme user group. > Is it possible to attend ? I would like to check with the group, but I am almost certain they wouldn't mind extra attendees. > Will you be video recording it ? > I have not previously been to an ABQ Lisp/Scheme meeting so I do not know what their setup will be, but it sounds rather informal (a small group many of which are already Org-mode literate) so my guess is that it will not be video taped. We may spend more time interactively working through usage examples rather than sticking to a presentation format. > > Best Regards, > > Bernard > > > -- Eric Schulte http://cs.unm.edu/~eschulte/
Re: [O] [Babel] : Bug in org-tangle with :comments, patch included
Applied. Thanks, aditya siram writes: > Hi all, > When I tangle a source block with ":comments yes" any spaces in the > sub-heading in which the block is found are replaced with "%2520" > instead of "%20". As a consequence when I "org-babel-detangle" the > correct heading is not found. > > As an example given the following org file: > * Babel Tangling > ** Test Source 1 >#+begin_src c :tangle /tmp/source1.txt :comments yes >nothing >#+end_src > > running "org-babel-tangle" generates the following source: > /* [[file:~/WorkingFiles/Org.org::*Test%2520Source%25201][Test-Source-1:1]] */ > > nothing > > /* Test-Source-1:1 ends here */ > > The problem is in the "org-babel-spec-to-string" function which takes > the correctly escaped link generated by "org-store-link": > "[[file:~/WorkingFiles/Org.org::*Test%20Source%201][Test-Source-1:1]]" > and escapes it again with "org-link-escape" which yielding the erroneous: > "[[file:~/WorkingFiles/Org.org::*Test%2520Source%25201][Test-Source-1:1]]". > > I have included a patch that removes the call to "org-link-escape" and > that fixes it on my machine. A grep of my current source tree shows > that "org-babel-spec-to-string" is only called from > "org-babel-tangle". I don't know if any other contribs are using this > function. > > -deech > > From 249f60fe17913db08f81bca40d12e114f66db4b6 Mon Sep 17 00:00:00 2001 > From: Deech > Date: Thu, 8 Mar 2012 13:25:14 -0600 > Subject: [PATCH 3/3] The link generated by org-store-link is escaped twice > when tangling with ":comments yes" flag. > > --- > lisp/ob-tangle.el |2 +- > 1 files changed, 1 insertions(+), 1 deletions(-) > > diff --git a/lisp/ob-tangle.el b/lisp/ob-tangle.el > index 15c0518..e629c12 100644 > --- a/lisp/ob-tangle.el > +++ b/lisp/ob-tangle.el > @@ -381,7 +381,7 @@ form >(start-line file link source-name params body comment)" >(let* ((start-line (nth 0 spec)) >(file (nth 1 spec)) > - (link (org-link-escape (nth 2 spec))) > + (link (nth 2 spec)) >(source-name (nth 3 spec)) >(body (nth 5 spec)) >(comment (nth 6 spec)) -- Eric Schulte http://cs.unm.edu/~eschulte/
Re: [O] Problem with babel and R + lattice
On Fri, Mar 9, 2012 at 2:41 AM, Rainer M Krug wrote:
> -BEGIN PGP SIGNED MESSAGE-
> Hash: SHA1
>
> On 08/03/12 21:52, John Hendy wrote:
>> Drat. I meant to add that when I run the code exactly as I have it from R
>> directly, it works. I
>> literally copy and paste my org-mode babel block code line by line into a
>> terminal and obtain
>> the proper output via tikz. *That's* the perplexing part. What would be
>> working directly from R
>> and not from Org-mode?
>>
>> For reference, I've generated plenty of stuff just like this via
>> org-mode/babel. Come to think
>> of it, even another lattice plot.
>>
>> Not sure how to pinpoint what's goofy about this specific plot.
>>
>> John
>>
>> On Thu, Mar 8, 2012 at 2:40 PM, John Hendy wrote:
>>> I have an R block like so:
>>>
>>> #+begin_src R
>>>
>>> library(lattice) library(tikzDevice)
>>>
>>> =bunch of code=
>>>
>>> barchart(side$name~side$x2,groups=side$type,horiz=T,
>>> xlim=c(0,0.75),col=c("lightblue","yellow"),xlab="Product Performance
>>> (2-box)")
>>>
>>> dev.off() tools::texi2dvi("bar-2b.tex",pdf=T)
>>>
>>> #+end_src
>>>
>>> The resultant tex file is empty where the tikz code should be and texi2dvi
>>> fails. Any
>>> suggestions? If I change my plot to base graphics with barplot, it works.
>>> I'm thinking this
>>> is a lattice/babel issue?
>
> As with ggplot, you have to print your plot (if I remember correctly), i.e:
>
> print(barchart(...))
I stumbled on this, too but hadn't posted back to the list yet. What
got me on the track to the solution was copying my babel block code
into an R source file and trying to do = > source("path/to/file")=
directly from R. That wasn't working either, so I knew it was
something I was doing and not org. I found the R faq which said that
source files don't generate output for everything unless you tell them
to print() :)
Thanks!
John
>
> Cheers,
>
> Rainer
>
>>>
>>>
>>> Thanks for any input, John
>>
>
>
> - --
> Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
> UCT), Dipl. Phys.
> (Germany)
>
> Centre of Excellence for Invasion Biology
> Stellenbosch University
> South Africa
>
> Tel : +33 - (0)9 53 10 27 44
> Cell: +33 - (0)6 85 62 59 98
> Fax : +33 - (0)9 58 10 27 44
>
> Fax (D): +49 - (0)3 21 21 25 22 44
>
> email: rai...@krugs.de
>
> Skype: RMkrug
> -BEGIN PGP SIGNATURE-
> Version: GnuPG v1.4.11 (GNU/Linux)
> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
>
> iEYEARECAAYFAk9ZwlcACgkQoYgNqgF2egqMewCfar+JxC9uV9p1O2IYVVYcqyeM
> 7/4AnRLp8gYqSDe/74D9helafqNR5Vgt
> =aDVb
> -END PGP SIGNATURE-
Re: [O] org tables
On Thu, Mar 8, 2012 at 8:20 PM, Peter Salazar wrote: > Hey everyone, > > Is there a way to get org to wrap text within a table cell? I want to be > able to enter long text entries into cells without expanding column width. > > Also, is there a way to merge cells—say, three cells vertically? I don't think you can do this via org. Whenever I have tables of any complexity, I end up doing them manually with tabular inside a #+begin_latex section. If you find a solution, I'd love to hear it! Perhaps there's a quicker way of using org-table placeholders and then doing some quick tweak to the .tex file generated rather than me doing the whole thing in LaTeX. Good luck, John > > Finally, orgtbl-mode is broken in markdown-mode. Does anyone know a > solution? > > Thanks, > Pater
[O] Another gsoc idea -- ragel
Ragel http://www.complang.org/ragel/ is a tool that integrates regular expressions and state machines under one umbrella. It has backends currently for C, C++, Objective-C, D, Java and Ruby. I do not think having an elisp backend would be a very big task. After that (in my estimate) org-mode code would (could) become half as long and twice as fast -- at least those sections that are heavily regex oriented
Re: [O] Another gsoc idea -- ragel
Rustom Mody writes: > Ragel http://www.complang.org/ragel/ is a tool that integrates regular > expressions and state machines under one umbrella. > It has backends currently for C, C++, Objective-C, D, Java and Ruby. > I do not think having an elisp backend would be a very big task. > > After that (in my estimate) org-mode code would (could) become half as > long and twice as fast -- at least those sections that are heavily > regex oriented I took the freedom to add your (slightly modified) proposal to the GSoC 2012 ideas page: http://orgmode.org/worg/org-contrib/gsoc2012/orgmode-gsoc2012-ideas.html -- cheers, Thorsten
Re: [O] Bug: 3 bugs and 2 proposals on ascii/html export [7.8.03]
Hi Gustav, * Gustav Wikström [09. Mar. 2012]: >> For me, it makes a lot of sense to invert both, as Mathias is suggesting >> it. >> > +1 +1 > It would conform more to a sort of "standard" that way, (see > http://en.wikipedia.org/wiki/Lightweight_markup_language#Section_headers) We did it this way on mechanical typewriters. Fred Flintstone
[O] Refile clear-cache after refiling to new headline?
I have org-refile-use-cache set. I refile a headline to foo.org/foo which doesn't exist yet. I'm prompted to create "foo" headline. I accept. Then, I refile another note to foo.org/foo foo.org/foo appears as the default refile location in the mini-buffer. So far so good. I press Enter. But now, I'm prompted again to create "foo" headline. I accept, and now foo.org has two "foo" headlines. Is this correct behavior? Of course, if I run C-0 C-x C-w then the foo headline is accepted without a prompt. It seems like org-mode didn't need to have the cache refreshed if you added a new headline by using org-refile. Am I just imagining things? Thanks, -Nate
Re: [O] Another gsoc idea -- ragel
Thorsten writes: > Rustom Mody writes: > >> Ragel http://www.complang.org/ragel/ is a tool that integrates regular >> expressions and state machines under one umbrella. >> It has backends currently for C, C++, Objective-C, D, Java and Ruby. >> I do not think having an elisp backend would be a very big task. >> >> After that (in my estimate) org-mode code would (could) become half as >> long and twice as fast -- at least those sections that are heavily >> regex oriented > > I took the freedom to add your (slightly modified) proposal to the GSoC > 2012 ideas page: > http://orgmode.org/worg/org-contrib/gsoc2012/orgmode-gsoc2012-ideas.html Perhaps related to this proposal would be a project to formally specify Org-mode's syntax. I'm thinking this could be an extension of the truly remarkable formalization work recently undertaken by Nicolas in support of his Org-mode AST representation and exporter, but with more of a focus on specification in such a way as to facilitate developing Org-mode parsers in other languages, be they Ragel, OCaml [1], VIM [2], Haskell (e.g., pandoc [3]), or scripting languages to allow exporting without Emacs (e.g., a replacement for org-ruby [4]) for use at github, wikis or any website in which Emacs is too large of a dependency. Cheers, Footnotes: [1] http://thread.gmane.org/gmane.emacs.orgmode/52736 [2] http://www.vim.org/scripts/script.php?script_id=3342 [3] http://johnmacfarlane.net/pandoc/ [4] http://orgmode.org/worg/org-tutorials/org-ruby.html -- Eric Schulte http://cs.unm.edu/~eschulte/
Re: [O] Participating in Google Summer of Code 2012
Hello, Jambunathan K writes: > Can the org-export driver make listified headings transparent to the > backend? I am reluctant to fake data presented to transcoders. I am even more reluctant when some information is lost in the process. A back-end might need to tell the difference between an headline that should be treated as a list and a regular list. For example some back-end with weak list concept (limited in the types of objects lists can contain) would rather not turn headlines into items. Currently, the exporter API is more oriented towards showing full info, and giving clues on how to handle it. > Currently listified headings are handled within org-e-backend-headline > through first-sibling and last sibling checks and the backends *do > know* that it is handling a headline in a special way. > > If you have reservations in considering the above request, I believe > handling of indented tables will be fragmented across plain-list/item > callbacks and headline callbacks. This is a back-end specific limitation. I guess it is unavoidable. Though, if you think about a generic tool that could reduce the amount of work required, I will include it in org-export.el. Regards, -- Nicolas Goaziou
[O] Babel Python sessions severely broken
Hi,
Picking up a few-month-old thread ...
On Tue, 21 Jun 2011 10:26:17 -0700, Eric Schulte wrote:
> You are suggesting that code to be run "interactively" should be written
> to an external file then loaded into the interactive session. This
> would certainly work around the syntax limitation of the current setup.
> My two concerns here are that
>
> 1. users who use interactive babel blocks side-by-side with the session
>may be used jumping into the session to play with code interactively
>and debug, in such cases rather than seeing their code in the session
>history they would only see execfile('/tmp/blahblah').
This is (almost) exactly what Emacs' python mode does, so I suspect
that many people who wish to work in this way, would be very familiar
with this state of affairs.
Actually, In modern python modes (Emacs 23, 24, maybe even 22) no clue
about any code having been injected into the session appars at all:
instead of seeing "execfile(/'tmp/blah')" they see nothing at all. I
think that IPyton's emacs-python-mode, might visually inject the whole
evaluated code into the session buffer.
>Note I do recall discussion on list related to user's reading
>their session code in the inferior session buffer.
I'd say that that interacting with their code in the session buffer is
more important than reading it there (on the grounds of this being the
usual python-mode workflow), but reading it there could be good too.
> 2. similarly error messages would now point into this temporary file,
>rather than back into the session history
Yes, this is what happens in current python modes, but M-g M-n and M-g
M-p usually manage to send you to the correct place (i.e. your genuine
source file, rather than the temporary file) anyway.
To see this in action:
1. (In Emacs 23 or 24) Create the following buffer
,[ foo.py ]
| print 1
| print 1/0
| print 2
`
2. Ensure that Python mode is enabled for the buffer (Emacs should
have switched it on automatically, by observing the .py extension.)
3. C-c C-z (This should start an inferior Python process, and switch
to its buffer.)
4. Go back to the foo.py buffer
5. C-c C-c (This should evaluate the whole buffer)
The inferior Python buffer should now show something like
,[ *Python* ]
| >>> 1
| Traceback (most recent call last):
| File "/tmp/py79095qL", line 2, in
| print 1/0
| ZeroDivisionError: integer division or modulo by zero
| >>>
`
6. M-g M-n (This should jump to line 2 in the foo.py buffer)
Maybe some of the stuff that's already in python-mode can be reused ?
> Basically you would prefer more decoupling from the interpreter
I would prefer it to be useable for evaluating normally formatted
Python code. In its current state it isn't. That makes it pretty much
unuseable for literal programming, creating documentation, tutorials,
etc.
I don't understand what you mean by "more decoupling from the
interpreter". Do you mean "overcoming Python's standard REPL's
inability to receive copy-pasted standard Pyton code?". I think that
would be a *very* worthwhile thing to support, which is why pretty
much anything that pretends to support Python interactivity, goes out
of its way to make it possible (Emacs' python-mode, IPython, IDLE are
a few obvious examples that come to mind.)
> and I'm not sure for the average user if this would be a worthwhile
> exchange simply to be able to avoid syntax errors like your
> originally mentioned example (which was the first such post I've
> seen on this list).
The current situation essentially makes Python babel sessions unusable
for anything but the most trivial cases. (Or it makes non-trivial use
possible at the cost of presening code in a horribly formatted style,
one which would be a horror to read.)
> I'm disinclined to make such a change without a wider base of support
> for the request from the Babel/Python user community
Please, please, make it possible to evaluate normal Python code in
Python babel sessions.
It's really important to understand that the restrictions imposed by
Python's plain REPL really are a horrible quirk: I can't imagine
anyone preferring the broken (if standard) behaviour, over correct
behaviour.
Put another way: You won't find many people who take Python
interactivity seriously, using the standard REPL. They all use
something that gets around the horrible restrictions it
imposes. Nobody wants this.
> or at least without more complaints about the existing behavior.
Please consider this to be a *vehement* complaint about the existing
behaviour. :-)
(I'd be happy to try to contribute some code to this, but I won't have
any time to think about it for, at least, the next 3 weeks.)
[O] android mobileorg: next week in agenda
Hello, wasn't able to find an answer to this. Is it possible in the Android MobileOrg version, when viewing agenda, to go to next or previous week? I'm using version 0.8.3 best wishes, renato
[O] [OT] Pipe mouse-highlight to FestivalLite/flite
* Does anyone know how to pipe "Link: http://orgmode.org"; highlighted text to "flite" ** Maybe a hook? (add-hook 'org-occur-highlights 'etc... ** I mean: I'm trying to get the mouse-highlight text that pops-up sent to "flite"--FestivalLite---then text-to-speech would be done---emacs could literally tell me what the OrgMode "LINK:..." is. *** To me, this could be used when the lights go out/turned screen off; for others, say if you're blind, it may be useful as a simple way to announce a link in an OrgMode buffer--before running it/going to the link. I'm familiar with emacspeak and speechd-el ( http://devel.freebsoft.org/speechd-el and http://emacspeak.sourceforge.net) but both of these have many dependencies etc.--flite is quick and easy to install: apt-get install flite
[O] Pipe mouse-highlight to FestivalLite/flite
* Does anyone know how to pipe "Link: http://orgmode.org"; highlighted text to "flite" ** Maybe a hook? (add-hook 'org-occur-highlights 'etc... ** Trying to get the mouse-highlight text that pops-up sent to "flite"--FestivalLite---then text-to-speech would be done---emacs could literally tell me what the OrgMode "LINK:..." is. *** This could be used when the lights go out/turned screen off; for others, say if you're blind, it may be useful as a simple way to announce a link in an OrgMode buffer--before running it/going to the link. Familiar with emacspeak and speechd-el http://devel.freebsoft.org/speechd-el and http://emacspeak.sourceforge.net * Both of these have many dependencies etc.--'flite" is quick and easy to install: apt-get install flite
Re: [O] Babel Python sessions severely broken
Jacek Generowicz writes:
> Hi,
>
> Picking up a few-month-old thread ...
>
> On Tue, 21 Jun 2011 10:26:17 -0700, Eric Schulte wrote:
>
>> You are suggesting that code to be run "interactively" should be written
>> to an external file then loaded into the interactive session. This
>> would certainly work around the syntax limitation of the current setup.
>> My two concerns here are that
>>
>> 1. users who use interactive babel blocks side-by-side with the session
>>may be used jumping into the session to play with code interactively
>>and debug, in such cases rather than seeing their code in the session
>>history they would only see execfile('/tmp/blahblah').
>
> This is (almost) exactly what Emacs' python mode does, so I suspect
> that many people who wish to work in this way, would be very familiar
> with this state of affairs.
>
> Actually, In modern python modes (Emacs 23, 24, maybe even 22) no clue
> about any code having been injected into the session appars at all:
> instead of seeing "execfile(/'tmp/blah')" they see nothing at all. I
> think that IPyton's emacs-python-mode, might visually inject the whole
> evaluated code into the session buffer.
>
>>Note I do recall discussion on list related to user's reading
>>their session code in the inferior session buffer.
>
> I'd say that that interacting with their code in the session buffer is
> more important than reading it there (on the grounds of this being the
> usual python-mode workflow), but reading it there could be good too.
>
>> 2. similarly error messages would now point into this temporary file,
>>rather than back into the session history
>
> Yes, this is what happens in current python modes, but M-g M-n and M-g
> M-p usually manage to send you to the correct place (i.e. your genuine
> source file, rather than the temporary file) anyway.
>
> To see this in action:
>
> 1. (In Emacs 23 or 24) Create the following buffer
>
> ,[ foo.py ]
> | print 1
> | print 1/0
> | print 2
> `
>
> 2. Ensure that Python mode is enabled for the buffer (Emacs should
>have switched it on automatically, by observing the .py extension.)
>
> 3. C-c C-z (This should start an inferior Python process, and switch
>to its buffer.)
>
> 4. Go back to the foo.py buffer
>
> 5. C-c C-c (This should evaluate the whole buffer)
>
>The inferior Python buffer should now show something like
>
> ,[ *Python* ]
> | >>> 1
> | Traceback (most recent call last):
> | File "/tmp/py79095qL", line 2, in
> | print 1/0
> | ZeroDivisionError: integer division or modulo by zero
> | >>>
> `
>
> 6. M-g M-n (This should jump to line 2 in the foo.py buffer)
>
> Maybe some of the stuff that's already in python-mode can be reused ?
>
>> Basically you would prefer more decoupling from the interpreter
>
> I would prefer it to be useable for evaluating normally formatted
> Python code. In its current state it isn't. That makes it pretty much
> unuseable for literal programming, creating documentation, tutorials,
> etc.
>
> I don't understand what you mean by "more decoupling from the
> interpreter". Do you mean "overcoming Python's standard REPL's
> inability to receive copy-pasted standard Pyton code?". I think that
> would be a *very* worthwhile thing to support, which is why pretty
> much anything that pretends to support Python interactivity, goes out
> of its way to make it possible (Emacs' python-mode, IPython, IDLE are
> a few obvious examples that come to mind.)
>
>> and I'm not sure for the average user if this would be a worthwhile
>> exchange simply to be able to avoid syntax errors like your
>> originally mentioned example (which was the first such post I've
>> seen on this list).
>
> The current situation essentially makes Python babel sessions unusable
> for anything but the most trivial cases. (Or it makes non-trivial use
> possible at the cost of presening code in a horribly formatted style,
> one which would be a horror to read.)
>
>> I'm disinclined to make such a change without a wider base of support
>> for the request from the Babel/Python user community
>
> Please, please, make it possible to evaluate normal Python code in
> Python babel sessions.
>
> It's really important to understand that the restrictions imposed by
> Python's plain REPL really are a horrible quirk: I can't imagine
> anyone preferring the broken (if standard) behaviour, over correct
> behaviour.
>
> Put another way: You won't find many people who take Python
> interactivity seriously, using the standard REPL. They all use
> something that gets around the horrible restrictions it
> imposes. Nobody wants this.
>
>> or at least without more complaints about the existing behavior.
>
> Please consider this to be a *vehement* complaint about the existing
> behaviour. :-)
>
> (I'd be happy to try to contribute some code to this, but I won't have
> any time to think about it for, at least, the next 3 weeks.)
>
Alright, I abhor python myself and played ver
Re: [O] org babel execute shell in sh?
Thanks tom! This is exactly what I need.
regards,
robb
On Wed, Mar 7, 2012 at 9:24 PM, Tom Regner wrote:
> Hi,
>
> Panruo Wu writes:
>
> > Dear list,
> >
> >
> > #+begin_src sh
> > for np in {1..32}
> > do
> > echo $np
> > done
> > #+end_src
> >
> > when executing, the output only shows
> > {1..32}
> > which is clearly not I want..
> >
> > After some investigation, I found that orgmode
> > uses "sh" that cannot understand the for loop above.
> >
> > My question is, how can I suggest orgmode to use
> > "bash" to execute shell script?
> >
> > I tried :shebang #!/bin/bash but it does not work
>
> I have the following in my config:
>
> %<--
> I really like org-babel to use zsh
> #+begin_src emacs-lisp
>(setq org-babel-sh-command "zsh")
> #+end_src
> %<--
>
> It is apparently not possible to set this variable via #+BIND: to only
> change this for one code block, at least I did not succeed to do so in
> my attempts to do so -- but maybe I just didn't read enough of the
> documentation to /get it right/.
>
> I don't know, if zsh||bash instead of sh breaks any assumptions org-mode
> makes about the environment in which sh code blocks are executed; up
> until now it works like a charm.
>
> Kind regards,
> Tom
>
Re: [O] Date-tree navigation question
Hi Robert, Not sure what you want to do after opening but I have some code that extracts a time range out of a date tree. Maybe you can reuse the searching parts ... Cheers, Martin -- (defun mp26/org-find-headline-prefix-in-buffer (heading &optional buffer pos-only) "Find node with heading-prefix HEADING in BUFFER. Return a marker to the heading if it was found, or nil if not. If POS-ONLY is set, return just the position instead of a marker. The heading prefix must match as prefix of the full headline. It may have a TODO keyword, a priority cookie and tags in the standard locations." (with-current-buffer (or buffer (current-buffer)) (save-excursion (save-restriction (widen) (goto-char (point-min)) (let (case-fold-search) (if (re-search-forward (format org-complex-heading-regexp-format (concat (regexp-quote heading) ".*")) nil t) (if pos-only (match-beginning 0) (move-marker (make-marker) (match-beginning 0) (defun mp26/org-week-from-journal () "Insert a copy of the current week from the journal." (interactive) (insert (mapconcat 'identity (with-current-buffer "Journal.org" (loop for days in '(-6 -5 -4 -3 -2 -1 0) collect (let* ((date (calendar-current-date days)) (date-string (format "%d-%02d-%02d" (nth 2 date) (nth 0 date) (nth 1 date (setq pos (mp26/org-find-headline-prefix-in-buffer date-string nil t)) (when pos (goto-char pos) (org-copy-subtree) (car kill-ring) ""))) --
Re: [O] Babel Python sessions severely broken
At Fri, 9 Mar 2012 13:31:05 -0700, Eric Schulte wrote: > I look forward to upcoming patches. I've not dug around the implementation of babel before. Any pointers on where to start?
Re: [O] Babel Python sessions severely broken
Jacek Generowicz writes: > At Fri, 9 Mar 2012 13:31:05 -0700, > Eric Schulte wrote: > >> I look forward to upcoming patches. > > I've not dug around the implementation of babel before. Any pointers > on where to start? > Sure, The best place to look at is existing lisp/ob-*.el files both for Python itself and other languages. These provide examples of how to deal with nearly every session execution contingency. The lisp/ob-comint.el file provides functions which abstract away some of the hairy details of working with session comint buffer. Largely I would hope that you'll have to spend more time with the python library which will be performing the evaluation, rather than with the related Org-mode functions. On the more general elisp dev side of things, one hint which I find useful when exploring the workings of new code is edebug, which allows single-stepping through the evaluation of a function. Thanks, please do let me know if I can help with advice or explanation, -- Eric Schulte http://cs.unm.edu/~eschulte/
Re: [O] Bug: 3 bugs and 2 proposals on ascii/html export [7.8.03]
On 09 Mar 2012, at 3:09 am +0100, Bastien wrote: > Mathias Bauer writes: > > As default, all level 1 headlines are underlined by - > > characters and level 2 headlines with =. Wouldn't it be > > more logical the other way round > Unless many users think this is illogical, I won't change > the default. Personally, I tend to agree with Mathias here. Maybe it's just because I like Markdown, but the `=' underline just feels like stronger emphasis to me. (Of course, I keep meaning to write a Markdown exporter, but also keep putting it off, so there you go.) Ivy
[O] add binding to org-babel-goto-named-src-block
Hi,
many functions in org-babel are bound to a letter X and C-X, it would be
nice if it was the case for org-babel-goto-named-src-block.
Here is a trivial patch.
diff --git a/lisp/ob-keys.el b/lisp/ob-keys.el
index cc11343..759bef3 100644
--- a/lisp/ob-keys.el
+++ b/lisp/ob-keys.el
@@ -60,7 +60,6 @@ functions which are assigned key bindings, and see
("u" . org-babel-goto-src-block-head)
("\C-u" . org-babel-goto-src-block-head)
("g" . org-babel-goto-named-src-block)
-("\C-g" . org-babel-goto-named-src-block)
("r" . org-babel-goto-named-result)
("\C-r" . org-babel-goto-named-result)
("\C-b" . org-babel-execute-buffer)
[O] Blank first line in a tangled file prevents src block execution
I have the following source block that I tangle to produce a short script: #+begin_src sh :tangle code/get_wavs.sh #!/bin/bash for fn_in in "$@"; do fn_out=$(sed -e 's|\.3gp$||g' -e 's|$|.wav|g' <<< $fn_in) ffmpeg -i $fn_in -vn -f wav -acodec pcm_u8 $fn_out done #+end_src However, the tangled file has a blank first line. As a result, I can't seem to run this script either using sh -c, or by putting it inside a code block. In other words, the following line fails: sh -c "code/test.sh data/salsa/20120308_av_jc/song2/*.3gp" code/test.sh: 4: Syntax error: redirection unexpected And, similarly, this fails #+begin_src sh code/get_wavs.sh data/salsa/20120308_av_jc/song2/*.3gp #+end_src On the other hand, the script runs fine from the command line, or from an org-mode shell: link, i.e. just running code/test.sh data/salsa/20120308_av_jc/song2/*.3gp at bash prompt produces the desired result. I am not sure what the rules are about blank lines before the hash-bang directive in Bash, and why in particular the blank line seems to cause sh -c ... and orb-babel src execution to break, but the current behavior seems broken.
Re: [O] Blank first line in a tangled file prevents src block execution
Leo Alekseyev wrote: > I have the following source block that I tangle to produce a short script: > > #+begin_src sh :tangle code/get_wavs.sh > #!/bin/bash > for fn_in in "$@"; do > fn_out=$(sed -e 's|\.3gp$||g' -e 's|$|.wav|g' <<< $fn_in) > ffmpeg -i $fn_in -vn -f wav -acodec pcm_u8 $fn_out > done > #+end_src > > However, the tangled file has a blank first line. As a result, I > can't seem to run this script either using sh -c, or by putting it > inside a code block. In other words, the following line fails: > Add ":padline no" Nick
Re: [O] Blank first line in a tangled file prevents src block execution
Nick Dokos writes: > Leo Alekseyev wrote: > >> I have the following source block that I tangle to produce a short script: >> >> #+begin_src sh :tangle code/get_wavs.sh >> #!/bin/bash >> for fn_in in "$@"; do >> fn_out=$(sed -e 's|\.3gp$||g' -e 's|$|.wav|g' <<< $fn_in) >> ffmpeg -i $fn_in -vn -f wav -acodec pcm_u8 $fn_out >> done >> #+end_src >> >> However, the tangled file has a blank first line. As a result, I >> can't seem to run this script either using sh -c, or by putting it >> inside a code block. In other words, the following line fails: >> > > Add ":padline no" > Or try #+begin_src sh :tangle code/get_wavs.sh :shebang #!/bin/bash for fn_in in "$@"; do fn_out=$(sed -e 's|\.3gp$||g' -e 's|$|.wav|g' <<< $fn_in) ffmpeg -i $fn_in -vn -f wav -acodec pcm_u8 $fn_out done #+end_src -- Eric Schulte http://cs.unm.edu/~eschulte/
Re: [O] Blank first line in a tangled file prevents src block execution
Eric Schulte wrote: > Or try > > #+begin_src sh :tangle code/get_wavs.sh :shebang #!/bin/bash > for fn_in in "$@"; do > fn_out=$(sed -e 's|\.3gp$||g' -e 's|$|.wav|g' <<< $fn_in) > ffmpeg -i $fn_in -vn -f wav -acodec pcm_u8 $fn_out > done > #+end_src > That reminds me: I believe shebang is used in tangling, but not in evaluation. Assuming that's correct, is there any fundamental reason for it not being used in evaluation? Panruo Wu's question in another thread ( http://thread.gmane.org/gmane.emacs.orgmode/53157 ) brought this to mind. Thanks, Nick
Re: [O] org babel execute shell in sh?
Tom Regner wrote:
> Hi,
>
> Panruo Wu writes:
>
> > Dear list,
> >
> >
> > #+begin_src sh=C2=A0
> > for np in {1..32}
> > do
> > =C2=A0 =C2=A0 echo $np
> > done
> > #+end_src
> >
> > when executing, the output only shows
> > {1..32}
> > which is clearly not I want..
> >
> > After some investigation, I found that orgmode
> > uses "sh" that cannot understand the for loop above.
> >
> > My question is, how can I suggest orgmode to use
> > "bash" to execute shell script?
> >
> > I tried :shebang #!/bin/bash but it does not work
>
> I have the following in my config:
>
> %<--
> I really like org-babel to use zsh
> #+begin_src emacs-lisp
> (setq org-babel-sh-command "zsh")
> #+end_src
> %<--
>
> It is apparently not possible to set this variable via #+BIND: to only
> change this for one code block, at least I did not succeed to do so in
> my attempts to do so -- but maybe I just didn't read enough of the
> documentation to /get it right/.
>
You are right that it is not possible: #+BIND is effective only when you
are exporting - basically, people wanted to change various setting on
export, and adding options for each and every one was too much, so
Carsten implemented BIND as a general mechanism for that. But it does
not apply to anything else; in particular, code block evaluation is
completely separate.
But you can use general emacs mechanisms to set it for a particular file:
that's what file local variables are all about:
(info "(emacs)Local Variables in Files")
Nick
> I don't know, if zsh||bash instead of sh breaks any assumptions org-mode
> makes about the environment in which sh code blocks are executed; up
> until now it works like a charm.
>
> Kind regards,
> Tom
>
Re: [O] Bug: 3 bugs and 2 proposals on ascii/html export [7.8.03]
On 9.3.2012, at 11:12, Sebastien Vauban wrote: > Hi Bastien and Mathias, > > Bastien wrote: >>> As default, all level 1 headlines are underlined by - characters and level >>> 2 headlines with =. Wouldn't it be more logical the other way round: the >>> lower the level, the more important the headline and hence the "bigger" its >>> underlining? (Of course the user can change the variable >>> org-export-ascii-underline.) >> >> Unless many users think this is illogical, I won't change the default. > > To be honest, fixing this was on my (huge) todo list: I've always found it > disturbing to have more imposing level-2 titles than the level-1 titles. > > For me, it makes a lot of sense to invert both, as Mathias is suggesting it. For what it is worth, I do agree that this looks wrong now and changing it would make it better. I do not remember why I chose the sequence that we have now. Looking at it now, I would also insert ... after ^^, and hope that # and $ never get any use :) Also I do not remember to consciously make the underlining one character too long but I also agree with Bastien that it does not look bad. Maybe another variable. - Carsten > > Best regards, > Seb > > -- > Sebastien Vauban > >
Re: [O] org babel execute shell in sh?
Nick Dokos schrieb:
>Tom Regner wrote:
>
>> Hi,
>>
>> Panruo Wu writes:
>>
>> > Dear list,
>> >
>> >
>> > #+begin_src sh=C2=A0
>> > for np in {1..32}
>> > do
>> > =C2=A0 =C2=A0 echo $np
>> > done
>> > #+end_src
>> >
>> > when executing, the output only shows
>> > {1..32}
>> > which is clearly not I want..
>> >
>> > After some investigation, I found that orgmode
>> > uses "sh" that cannot understand the for loop above.
>> >
>> > My question is, how can I suggest orgmode to use
>> > "bash" to execute shell script?
>> >
>> > I tried :shebang #!/bin/bash but it does not work
>>
>> I have the following in my config:
>>
>> %<--
>> I really like org-babel to use zsh
>> #+begin_src emacs-lisp
>> (setq org-babel-sh-command "zsh")
>> #+end_src
>> %<--
>>
>> It is apparently not possible to set this variable via #+BIND: to
>only
>> change this for one code block, at least I did not succeed to do so
>in
>> my attempts to do so -- but maybe I just didn't read enough of the
>> documentation to /get it right/.
>>
>
>You are right that it is not possible: #+BIND is effective only when
>you
>are exporting - basically, people wanted to change various setting on
>export, and adding options for each and every one was too much, so
>Carsten implemented BIND as a general mechanism for that. But it does
>not apply to anything else; in particular, code block evaluation is
>completely separate.
>
>But you can use general emacs mechanisms to set it for a particular
>file:
>that's what file local variables are all about:
>
>(info "(emacs)Local Variables in Files")
>
>Nick
Ah, I didn't know that about BIND; but I do know file local variables. I don't
need them in this case, as I always want to use zsh. And the OP asked for a
different shell for one code block only, not the whole file.
But I'm often bitten by the distinction between export and tangling --
:padline, :shebang come to mind, where I expected org-babel to honour the
setting in both cases.
well you live and learn: -) And org-mode truly is a joy to use, a marvelous
piece of software, without which I couldn't do all my work im emacs.
Tom
>
>> I don't know, if zsh||bash instead of sh breaks any assumptions
>org-mode
>> makes about the environment in which sh code blocks are executed; up
>> until now it works like a charm.
>>
>> Kind regards,
>> Tom
>>
--
http://www.tomsdiner.de
xmpp: t...@sec.goochesa.de
[O] How to get header in second table generated by src block
--- 8< --- #+TITLE: One code two tables Hello, I'm adopting my workflow to org, and now I want to understand what I do wrong in following. Suppose I have two tables with headers and three columns. In export to html I want to get two tables with first and third columns only. The first table is #+name: raw-to-table #+begin_src emacs-lisp :var table=raw :exports results (mapcar (lambda (row) (if (equal row 'hline) ;; <- special handling for 'hline row (list (concat "~" (nth 0 row) "~") (nth 2 row table) #+end_src The second table is #+call: raw-to-table[:exports results](table=raw2) In my environment the second table doesn't have headers. Why? What I do wrong? * COMMENT The tables data #+tblname: raw | Key | Code | Description | |--+---+-| | KEY1 | CODE1 | DESCR1 | | KEY2 | CODE2 | DESCR2 | | KEY3 | CODE3 | DESCR3 | Second table, key, code and description differ. #+tblname: raw2 | Key| Code| Description | |+-+-| | KEY_A1 | CODE_A1 | DESCR_A1| | KEY_A2 | CODE_A2 | DESCR_A2| | KEY_A3 | CODE_A3 | DESCR_A3| P.S. This is not mine code I borrowed it from Eric Schulte. Thanks Eric for the code! P.S.S. The ~:exports results~ in ~#+call~ is taken from previous version of code when I tried src block with ~:exports none~ (at first I wanted to separate code and where to insert table). --- 8< --- -- It has been said that man is a rational animal. All my life I have been searching for evidence which could support this. -- Bertrand Russell
