Re: [O] Question re. Bernt's agenda setup
Viktor Rosenfeld listuse...@gmail.com writes: Hi Manish, it's Shift-P and you need to bind the function bh/narrow-to-project to the keycode. See the code blocks in the following two sections: http://doc.norang.ca/org-mode.html#SpeedCommands http://doc.norang.ca/org-mode.html#NarrowToSubtree I managed to make this work, but if I run the command in the agenda I need to refresh it afterwards (using 'g'). Are you seeing the same thing? And I also want to say I have learned a lot implementing the suggestions in that document. Alan
Re: [O] Bug: Generation of pdf when using OPTIONS: H: faulty [7.9.2 (release_7.9.2-588-g8fb2cb @ /home/rkrug/.emacs.d/org-mode/lisp/)]
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi Can somebody please confirm if this is a bug or caused by my setup? Thanks, Rainer On 15/11/12 15:03, Rainer M Krug wrote: Hi When exporting the tree below (Linear Mixed Effect Models) as pdf, the some headers are omitted when OPTIONS: H: is used. When this option is removed, the export is fine, but as expected the fourth level headers are converted to lists, but I would like to have them as headers in the toc. This worked in earlier versions of org, but unfortunately I can not tell you when it changed. I attach the org file, tex and pdf Cheers, Rainer #+OPTIONS: toc:5 #+OPTIONS: H:5 * Linear Mixed Effect Models Load the package nlme #+begin_src R # #+end_src ** Brunia laevis *** Height Clean old =dat.*= objects out #+begin_src R # #+end_src Define the default models #+begin_src R # #+end_src Fit a linear model as a baseline #+begin_src R # #+end_src Fit the lme for different random effects random intercept and slope #+begin_src R # #+end_src only random intercept #+begin_src R # #+end_src Emacs : GNU Emacs 24.2.1 (i686-pc-linux-gnu, GTK+ Version 2.24.13) of 2012-11-06 on dubnium, modified by Debian Package: Org-mode version 7.9.2 (release_7.9.2-588-g8fb2cb @ /home/rkrug/.emacs.d/org-mode/lisp/) current state: == (setq org-ctrl-c-ctrl-c-hook '(org-babel-hash-at-point org-babel-execute-safely-maybe) org-export-latex-packages-alist '(( color t) ( listings t)) org-src-fontify-natively t org-plantuml-jar-path /home/rkrug/jar/plantuml.jar org-export-kill-product-buffer-when-displayed t org-export-with-drawers nil org-ellipsis ? ? ? org-export-with-tags 'not-in-toc org-export-preprocess-before-selecting-backend-code-hook '(org-beamer-select-beamer-code) org-tab-first-hook '(org-hide-block-toggle-maybe org-src-native-tab-command-maybe org-babel-hide-result-toggle-maybe org-babel-header-arg-expand) org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers org-cycle-hide-inline-tasks org-cycle-show-empty-lines org-optimize-window-after-visibility-change) org-agenda-before-write-hook '(org-agenda-add-entry-text) org-confirm-babel-evaluate nil org-speed-command-hook '(org-speed-command-default-hook org-babel-speed-command-hook) org-src-window-setup 'current-window org-babel-pre-tangle-hook '(save-buffer) org-occur-hook '(org-first-headline-recenter) org-structure-template-alist '((lua #+begin_src lua \n ?\n#+end_src src lang=\lua\\n\n/src) (r #+begin_src R ?\n\n#+end_src src lang=\R\\n\n/src) (s #+BEGIN_SRC ?\n\n#+END_SRC src lang=\?\\n\n/src) (e #+BEGIN_EXAMPLE\n?\n#+END_EXAMPLE example\n?\n/example) (q #+BEGIN_QUOTE\n?\n#+END_QUOTE quote\n?\n/quote) (v #+BEGIN_VERSE\n?\n#+END_VERSE verse\n?\n/verse) (c #+BEGIN_CENTER\n?\n#+END_CENTER center\n?\n/center) (l #+BEGIN_LaTeX\n?\n#+END_LaTeX literal style=\latex\\n?\n/literal) (L #+LaTeX: literal style=\latex\?/literal) (h #+BEGIN_HTML\n?\n#+END_HTML literal style=\html\\n?\n/literal) (H #+HTML: literal style=\html\?/literal) (a #+BEGIN_ASCII\n?\n#+END_ASCII) (A #+ASCII: ) (i #+INDEX: ? #+INDEX: ?) (I #+INCLUDE: %file ? include file=%file markup=\?\)) org-metaup-hook '(org-babel-load-in-session-maybe) org-confirm-elisp-link-function 'yes-or-no-p org-export-latex-format-toc-function 'org-export-latex-format-toc-default org-hide-leading-stars t org-capture-templates '((p Problem to be logged in buffer entry (file+headline (buffer-file-name) QUESTIONS) * %?\n- revision :: %(symbol-name (vc-working-revision (buffer-file-name (org-capture-get :original-buffer\n- state:: %(symbol-name (vc-state (buffer-file-name (org-capture-get :original-buffer\n- link :: %a \n- author :: Rainer M Krug, email: rai...@krugs.de) (c Changes to be logged in buffer entry (file+headline (buffer-file-name) CHANGES) * %T %? \n- revision :: %(symbol-name (vc-working-revision (buffer-file-name (org-capture-get :original-buffer\n- state:: %(symbol-name (vc-state (buffer-file-name (org-capture-get :original-buffer\n- link :: %a \n- author :: Rainer M Krug, email: rai...@krugs.de %n) (t TODO to be logged in buffer entry (file+headline (buffer-file-name) TODOs) * TODO %?\n- revision :: %(symbol-name (vc-working-revision (buffer-file-name (org-capture-get :original-buffer\n- state:: %(symbol-name (vc-state (buffer-file-name (org-capture-get :original-buffer\n- link :: %a \n- author :: Rainer M Krug, email: rai...@krugs.de) (T Todo to be logged in Notes.org entry (file+headline (concat org-directory /Notes.org) Tasks) * TODO %?\n %i\n %T\n %a) (M Misc to be logged in Notes.org entry (file+headline (concat org-directory /Notes.org) Misc) * %?\n %i\n %T\n %a) (I Info to be logged in Notes.org entry (file+headline (concat org-directory /Notes.org) Information) * %?\n %i\n
[O] [PATCH] Change fontification order for links
* lisp/org.el (org-set-font-lock-defaults): let footnote fontifications be done before other links' fontification. This allows links appearing inside footnotes to be both visible and active. TINYCHANGE --- lisp/org.el |2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lisp/org.el b/lisp/org.el index cfd8651..15b73aa 100644 --- a/lisp/org.el +++ b/lisp/org.el @@ -5901,13 +5901,13 @@ needs to be inserted at a specific position in the font-lock sequence.) '(1 'org-special-keyword t) '(3 'org-property-value t)) ;; Links + (if (memq 'footnote lk) '(org-activate-footnote-links)) (if (memq 'tag lk) '(org-activate-tags (1 'org-tag prepend))) (if (memq 'angle lk) '(org-activate-angle-links (0 'org-link t))) (if (memq 'plain lk) '(org-activate-plain-links)) (if (memq 'bracket lk) '(org-activate-bracket-links (0 'org-link t))) (if (memq 'radio lk) '(org-activate-target-links (0 'org-link t))) (if (memq 'date lk) '(org-activate-dates (0 'org-date t))) - (if (memq 'footnote lk) '(org-activate-footnote-links)) '(^?%%(.*\\|%%([^\n]*? (0 'org-sexp-date t)) '(org-hide-wide-columns (0 nil append)) ;; TODO keyword -- 1.7.9.5
Re: [O] Question re. Bernt's agenda setup
Alan Schmitt wrote: Viktor Rosenfeld listuse...@gmail.com writes: Hi Manish, it's Shift-P and you need to bind the function bh/narrow-to-project to the keycode. See the code blocks in the following two sections: http://doc.norang.ca/org-mode.html#SpeedCommands http://doc.norang.ca/org-mode.html#NarrowToSubtree I managed to make this work, but if I run the command in the agenda I need to refresh it afterwards (using 'g'). Are you seeing the same thing? Yes, unfortunately. I think I remember that it used to refresh the agenda automatically. This is above my pay grade, I'm afraid. Cheers, Viktor And I also want to say I have learned a lot implementing the suggestions in that document. Alan
[O] sum up variables from different org-mode tables
Dear helpers, I have a big file where I enter incomings and outgoings of book exchanges with different institutions: * Institution A | | In | # | € | Out | # | € | |---+-++-+-++-| | | Title P | 1 | 45 | Title A | 1 | 15 | | | || | Title B | 2 | 28 | |---+-++-+-++-| | # | | 1 | 45 | | 3 | 43 | | ^ | | TE | TEE | | TA | TAE | #+TBLFM: $TE=vsum(@I..@II)::$TEE=vsum(@I..@II)::$TA=vsum(@I..@II)::$TAE=vsum(@I..@II) * Institution B | | In | # | € | Out | # | € | ... | # || 1 | 24 | | 2 | 31 | | ^ || TE | TEE | | TA | TAE | Now I would like to get some statistics that consider all institutions together. For example summing up the variable TAE from all the tables in the file to get the very total cost of outgoings. Is something like that possible? Thank you very much in advance! Martin
Re: [O] Question re. Bernt's agenda setup
Hello Bernt and others, I was picking up tips from Bernt's awesome and famous document at http://doc.norang.ca/org-mode.html. In section 7.1, just between the two screenshots, I came across following text: ,[ excerpt from section 7.1 ] | After selecting a project (with P on any task in the agenda) the | block agenda changes to show the project and any subprojects in | the Projects section. Tasks show project-related tasks that are | hidden when not narrowed to a project. ` The feature/concept seems very useful to be able to zoom into a project of interest but I could't figure out how =P= helps with this since it seems to move to previous item while in the ageda view. Can someone (or Bernt) using the setup point me to right direction please? On Fri, Nov 16, 2012 at 3:12 AM, Viktor Rosenfeld wrote: Hi Manish, it's Shift-P and you need to bind the function bh/narrow-to-project to the keycode. See the code blocks in the following two sections: http://doc.norang.ca/org-mode.html#SpeedCommands http://doc.norang.ca/org-mode.html#NarrowToSubtree Thank you! I should learn to read better, I guess. By any chance, would you also know if all the configuration is available in one place, perhaps a git repo (it's not in org-mode-doc repo) or perhaps a way to pick out all #+begin_src parts from the .org version? Cheers, Manish
Re: [O] Issue when jumping from agenda view to clock line
Hi, Here's a small example. #+begin_src org * My tasks ** First task :LOGBOOK: CLOCK: [2012-10-22 Mon 13:00]--[2012-10-22 Mon 14:30] = 1:00 CLOCK: [2012-10-23 Tue 13:00]--[2012-10-23 Tue 14:30] = 1:00 CLOCK: [2012-10-24 Wed 13:00]--[2012-10-24 Wed 14:30] = 1:00 :END: #+end_src In the agenda view (C-c a a) for Wed 24, enable the check view (v c), then press ENTER on the log line for First task, you jump to the corresponding heading (First task) but it positions the cursor just after the :LOGBOOK: keyword and the drawer remains closed. Just to let you know that I found the issue... It was coming from the following code I was using (taken from Worg: http://orgmode.org/worg/org-configs/org-hooks.html): ╭ │ ;; get a compact view during follow mode in the agenda │ (defun my-compact-follow () │ Make the view compact, then show the necessary minimum. │ (ignore-errors │ (save-excursion │ (while (org-up-heading-safe)) │ (hide-subtree))) │ (let ((org-show-siblings nil) │ (org-show-hierarchy-above t)) │ (org-reveal)) │ (save-excursion │ (org-back-to-heading t) │ (show-children))) │ │(add-hook 'org-agenda-after-show-hook 'my-compact-follow) ╰ But I don't understand the cause of it. Thanks, Francesco
Re: [O] Question re. Bernt's agenda setup
Manish mailtomanish.sha...@gmail.com writes: a way to pick out all #+begin_src parts from the .org version? (org-babel-tangle optional ONLY-THIS-BLOCK TARGET-FILE LANG), bound to `C-c C-v t' by default. Not all emacs-lisp blocks are set to :tangle yes, though. Or use a quick Keyboard macro (info (emacs)Keyboard Macros) .
Re: [O] Bug: Generation of pdf when using OPTIONS: H: faulty [7.9.2 (release_7.9.2-588-g8fb2cb @ /home/rkrug/.emacs.d/org-mode/lisp/)]
Hello, Rainer M Krug r.m.k...@gmail.com writes: Can somebody please confirm if this is a bug or caused by my setup? I'm not sure to understand the problem you seem to encounter. The generated tex file looks fine. What did you expect in the tex file that would be missing? Regards, -- Nicolas Goaziou
Re: [O] Bug: Generation of pdf when using OPTIONS: H: faulty [7.9.2 (release_7.9.2-588-g8fb2cb @ /home/rkrug/.emacs.d/org-mode/lisp/)]
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 16/11/12 15:27, Nicolas Goaziou wrote: Hello, Rainer M Krug r.m.k...@gmail.com writes: Can somebody please confirm if this is a bug or caused by my setup? I'm not sure to understand the problem you seem to encounter. The generated tex file looks fine. What did you expect in the tex file that would be missing? Thanks for checking. in the pdf: Fit a linear model as a baseline is missing random intercept and slope is behind ... random effects The tex file looks fine, but the pdf is missing these. I just tried it again with manually running the file against pdflatex and it is missing as well. No idea what is wrong in the tex file, as I am just a basic LaTeX user. Cheers, Rainer Regards, -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.11 (GNU/Linux) Comment: Using GnuPG with Mozilla - http://www.enigmail.net/ iEYEARECAAYFAlCmUTgACgkQoYgNqgF2egof4gCgiunvbbXEKTeGl5iGER+J725y npkAoIS59jphvLfRHkKp16D/aDfJg5Qe =yAYT -END PGP SIGNATURE-
Re: [O] [PATCH] Separate clocksum format for durations = 1 day
On Wed, Nov 14, 2012 at 05:20:14PM +0100, Toby Cubitt wrote:
On Wed, Nov 14, 2012 at 05:09:38PM +0100, Nicolas Goaziou wrote:
Toby Cubitt ts...@cantab.net writes:
I can easily allow org-time-clocksum-fractional-format to be a list of
formats. But 1d 3.4h doesn't seem very useful to me. Probably it should
work a bit differently: format the time as a fractional quantity, using
the largest time unit which will give a non-zero integer part.
Does that sound reasonable?
That's the idea, yes. Though, it will be the largest time unit _with
a format string_ which will give a non-zero integer part.
Yes, that's what I meant.
OK, but in this case I think the single-format-string option is still
useful. It gives users a simpler way of customizing the format if they
don't want to do anything fancy.
If they don't want to do anything fancy, they use the default value,
whatever it may be. ;) I don't mind keeping the single format string
option anyway.
I'll leave it in my patch. If you want to remove it for 8.0, it'll be a
simple case of deleting some code.
I'll post an updated patch when I get time to make the changes.
Since it's for 8.0, there's no hurry. I'll wait for you to merge the two
patches and make subsequent changes.
Here's an updated patch. Now both org-time-clocksum-format and
org-time-clocksum-fractional-format can be plists, as discussed.
In the org-time-clocksum-format case, I made the values cons cells which
specify both a format string and a boolean. The latter indicates whether
the time component should always be included in the formatted duration,
even if its value is 0. This is needed for the hours component to
reproduce the current default format, and I figured I might as well make
it general.
I used a somewhat complex customization type in the defcustoms, instead
of a straight plist, in order to produce a better ui for the
customization interface. I'm still not completely satisfied with it.
E.g. it would be nice to get rid of the Cons cell tag entirely, and use
a checkbox for the boolean. But I can't figure out how to do that
(without defining new customization types/widgets, which I don't have the
patience for).
Toby
--
Dr T. S. Cubitt
Mathematics and Quantum Information group
Department of Mathematics
Complutense University
Madrid, Spain
email: ts...@cantab.net
web: www.dr-qubit.org
From 639baf9c942df97e7355f402a9df38e6c9b6ef88 Mon Sep 17 00:00:00 2001
From: Toby S. Cubitt ts...@cantab.net
Date: Sun, 11 Nov 2012 22:20:24 +
Subject: [PATCH] Allow more flexible customization of clocksum format
* lisp/org.el (org-time-clocksum-format, org-time-clocksum-fractional-format):
in addition to a single format string, the clocksum formats can now be
plists specifying separate formats for different time units.
* lisp/org.el (org-minutes-to-clocksum-string): new function to
replace org-minutes-to-hh:mm-string, which converts a number of
minutes to a string according to the customization options.
* lisp/org-colview.el (org-columns-number-to-string): use new
org-minutes-to-clocksum-string function to format clocksum durations.
* lisp/org-clock.el: always call new org-minutes-to-clocksum-string
function when formatting time durations, instead of calling
org-minutes-to-hh:mm-string or passing org-time-clocksum-format
directly to format.
---
lisp/org-clock.el | 51 +--
lisp/org-colview.el |3 +-
lisp/org.el | 175 +++---
3 files changed, 183 insertions(+), 46 deletions(-)
diff --git a/lisp/org-clock.el b/lisp/org-clock.el
index 84eb2fd..c768491 100644
--- a/lisp/org-clock.el
+++ b/lisp/org-clock.el
@@ -556,28 +556,23 @@ pointing to it.
If an effort estimate was defined for the current item, use
01:30/01:50 format (clocked/estimated).
If not, show simply the clocked time like 01:50.
- (let* ((clocked-time (org-clock-get-clocked-time))
- (h (floor clocked-time 60))
- (m (- clocked-time (* 60 h
+ (let ((clocked-time (org-clock-get-clocked-time)))
(if org-clock-effort
(let* ((effort-in-minutes
(org-duration-string-to-minutes org-clock-effort))
- (effort-h (floor effort-in-minutes 60))
- (effort-m (- effort-in-minutes (* effort-h 60)))
(work-done-str
(org-propertize
- (format org-time-clocksum-format h m)
+ (org-minutes-to-clocksum-string clocked-time)
'face (if (and org-clock-task-overrun (not org-clock-task-overrun-text))
'org-mode-line-clock-overrun 'org-mode-line-clock)))
- (effort-str (format org-time-clocksum-format effort-h effort-m))
+ (effort-str (org-minutes-to-clocksum-string effort-in-minutes))
(clockstr (org-propertize
(concat [%s/ effort-str
] ( (replace-regexp-in-string % %% org-clock-heading) ))
'face 'org-mode-line-clock)))
(format clockstr work-done-str))
- (org-propertize (format
- (concat [ org-time-clocksum-format
Re: [O] sum up variables from different org-mode tables
Hi Martin On Fri, Nov 16, 2012 at 12:33 PM, Martin Gross m-gr...@gmx.net wrote: Now I would like to get some statistics that consider all institutions together. For example summing up the variable TAE from all the tables in the file to get the very total cost of outgoings. Below are two approaches to achieve this. For future development I would like to point out two things: 1) Assignment of empty field: I think that, generally and not only for your example, some existing or future format specifier should take care to not fill the destination cell with 0 when the source cell is empty. The format specifiers E and L how they work now do not help in this case. Sometimes I use a workaround like $3 = if($1 $2, $1 + $2, string()) which works only for non-zero numbers. 2) Indirection of remote table name: Although there is a very nice formula editor C-c ' (org-table-edit-formulas) which helps a lot in this case, in both variants editing of the total formula scales badly with the number of tables. A nice solution for variant 2 would be if @2$3..@2$7 = remote(A, @$$#) :: @3$3..@3$7 = remote(B, @$$#) could be simplified to @I$3..@II$7 = remote($8, @$$#) Your example with the two approaches: * Institution A #+TBLNAME: A | | In | # | € | Out | # | € | |---+-++-+-++-| | | Title P | 1 | 45 | Title A | 1 | 15 | | | || | Title B | 2 | 28 | |---+-++-+-++-| | # | | 1 | 45 | | 3 | 43 | | ^ | | TE | TEE | | TA | TAE | #+TBLFM: $TE=vsum(@I..@II)::$TEE=vsum(@I..@II)::$TA=vsum(@I..@II)::$TAE=vsum(@I..@II) * Institution B #+TBLNAME: B | | In | # | € | Out | # | € | |---+-++-+-++-| | | Title Q | 1 | 24 | Title C | 2 | 31 | |---+-++-+-++-| | # | | 1 | 24 | | 2 | 31 | | ^ | | TE | TEE | | TA | TAE | #+TBLFM: $TE=vsum(@I..@II)::$TEE=vsum(@I..@II)::$TA=vsum(@I..@II)::$TAE=vsum(@I..@II) * total variant 1 | | In | # | € | Out | # | € | |---+++-+-++-| | # || 2 | 69 | | 5 | 74 | | ^ || TE | TEE | | TA | TAE | #+TBLFM: $TE = remote(A, $TE) + remote(B, $TE) :: $TEE = remote(A, $TEE) + remote(B, $TEE) :: $TA = remote(A, $TA) + remote(B, $TA) :: $TAE = remote(A, $TAE) + remote(B, $TAE) * total variant 2 | | In | # | € | Out | # | € | institution | |---+++-+-++-+-| | || 1 | 45 | 0 | 3 | 43 | A | | || 1 | 24 | 0 | 2 | 31 | B | |---+++-+-++-+-| | # || 2 | 69 | | 5 | 74 | | | ^ || TE | TEE | | TA | TAE | | #+TBLFM: @2$3..@2$7 = remote(A, @$$#) :: @3$3..@3$7 = remote(B, @$$#) :: $TE=vsum(@I..@II) :: $TEE=vsum(@I..@II) :: $TA=vsum(@I..@II) :: $TAE=vsum(@I..@II) “$$#”: the first “$” is for “column” and “$#” is for the number of the current column to copy a row column by column, just like the equivalent “@@#” mentioned in “3.5.1 References in the manual. Michael
[O] subtree-export limitations
Hi,
currently the support for subtree export is somewhat limited due to the
fact that individual EXPORT_* options are allowed only once.
I.e., in the following the second latex-header-property will be ignored:
* Some subtree
:PROPERTIES:
:LATEX_CLASS: scrartcl
:EXPORT_OPTIONS: toc:nil
:EXPORT_LATEX_HEADER: \usepackage[ngerman]{babel}
:EXPORT_LATEX_HEADER: \usepackage{xcolor}
:END:
So would be any other EXPORT_OPTIONS-line. The responsible function is
org-export--get-subtree-options, which builds a list of already seen
keywords. The lists members are then ignored if seen again.
Is there any particular reason why this is done?
Sorry if this is documented or discussed somewhere already, I couldn't
find any reference that explains this behaviour.
Best regards,
Philipp
Re: [O] subtree-export limitations
Philipp Kroos philipp.kr...@t-online.de writes:
currently the support for subtree export is somewhat limited due to the
fact that individual EXPORT_* options are allowed only once.
I.e., in the following the second latex-header-property will be ignored:
* Some subtree
:PROPERTIES:
:LATEX_CLASS: scrartcl
:EXPORT_OPTIONS: toc:nil
:EXPORT_LATEX_HEADER: \usepackage[ngerman]{babel}
:EXPORT_LATEX_HEADER: \usepackage{xcolor}
:END:
We discussed this recently. A simple workaround is to create a new
export class with the headers you need. Another workaround is to put all
the headres in a very long line.
Alan
Re: [O] Literate programming of interactive proofs?
Alan Schmitt alan.schm...@polytechnique.org writes: Hello, I want to use org-mode to write a paper about a development in Coq. Coq is an interactive proof system, which can be run (among other ways) interactively through emacs. The interactive part is very important, as doing or maintaining proofs often requires exploring many different direction. I'm wondering if it's still possible to use org-mode to write such a paper. Yes, this is possible. See here [1] for a paper demonstrating the use of Org-mode to support both literate programming and reproducible research. I see two ways of doing it: - either be able to interactively interact with Coq from org-mode - or write the development separately, and have a way to include parts of the file (for instance identified by special markers in some comments) into the final paper. Is any of this possible? Either will be possible with a little bit of work. In either case I think you will want to implement Org-mode code block support (see [2]) for Coq. Code blocks allow Org-mode to interact with external processes and programming languages, and can be used for simple things like running external shell commands or more complex cases like interacting with a persistent R process through ESS. Interactive use of code blocks are called sessions in the Org-mode documentation. Assuming that there exists (or can be easily written) a function which passes commands to the Coq process and returns results, e.g., something that would be used to drive an interactive Coq console, lets call this function `coq-eval' for the purpose of this email. Then the following elisp snippet would be sufficient to provide minimal Coq code block support. (defun org-babel-execute:coq (body params) (coq-eval body)) If you do end up writing any level of support for Coq code blocks please consider contributing it to Org-mode. Hope this helps, The second option would probably require some custom code, but I don't know if it would be very complex. Thanks a lot, Alan Schmitt Footnotes: [1] http://www.jstatsoft.org/v46/i03 [2] http://orgmode.org/manual/Working-With-Source-Code.html -- Eric Schulte http://cs.unm.edu/~eschulte
Re: [O] Bug? R: Org babel block execution *drastically* slower than in ESS session directly
Andreas Leha andreas.l...@med.uni-goettingen.de writes: t...@tsdye.com (Thomas S. Dye) writes: Aloha Aaron, Welcome to Org-mode. Aaron Ecay aarone...@gmail.com writes: 2012ko azaroak 13an, John Hendy-ek idatzi zuen: [...] Crazy. I really wondered if it had something to do with trying to spit out the results into the minibuffer. Why is that behavior included? “:results silent” just means “silent except for the minibuffer”; IDK why. [...] Just for the record: I would also love to see the really-silent results. Yes, the existing :results silent option still echos the results to the minibuffer. It was originally added in the case where one does not want to change the Org-mode buffer (but would still like to see code block output). The attached patch adds a really-silent results header argument. To see the impact compare the running time of the following two code blocks. #+begin_src sh :results really-silent seq 1 #+end_src #+begin_src sh :results silent seq 1 #+end_src Before such a patch is applied it would need corresponding documentation, and the really-silent moniker may need to be reconsidered in favor of something more informative (the main purpose of this header argument is not silence but is rather avoiding all post processing), and ideally shorter as well. These new header arguments are of no value if they are not easily discover-able and easily remember-able to help others avoid the same issue that launched this thread. Cheers, From 8ae5b59acdaaa271c797756bfe7f9479e1f9a277 Mon Sep 17 00:00:00 2001 From: Eric Schulte eric.schu...@gmx.com Date: Fri, 16 Nov 2012 08:40:46 -0700 Subject: [PATCH] really-silent header avoids result post-process This patch introduces a new header argument which hide all code block results from Emacs so that they are not processed into Emacs-lisp objects; a process which may take a great deal of time for large objects. * lisp/ob.el (org-babel-common-header-args-w-values): Adding the new really-silent header argument. (org-babel-execute-src-block): Don't do *any* result processing if the really-silent header argument has been specified. (org-babel-sha1-hash): Remove the really-silent header argument from header arg lists when calculating cache sums. (org-babel-insert-result): Flesh out some documentation. --- lisp/ob.el | 15 +++ 1 file changed, 11 insertions(+), 4 deletions(-) diff --git a/lisp/ob.el b/lisp/ob.el index 69a5c58..167fe1a 100644 --- a/lisp/ob.el +++ b/lisp/ob.el @@ -421,7 +421,7 @@ then run `org-babel-pop-to-session'. (padline . ((yes no))) (results . ((file list vector table scalar verbatim) (raw html latex org code pp drawer) - (replace silent append prepend) + (replace silent really-silent append prepend) (output value))) (rownames . ((no yes))) (sep . :any) @@ -562,6 +562,8 @@ block. (message executing %s code block%s... (capitalize lang) (if (nth 4 info) (format (%s) (nth 4 info)) )) + (if (member really-silent result-params) + (message result silenced) (setq result ((lambda (result) (if (and (eq (cdr (assoc :result-type params)) 'value) @@ -581,7 +583,8 @@ block. (org-babel-insert-result result result-params info new-hash indent lang) (run-hooks 'org-babel-after-execute-hook) - result)) + result + ))) (setq call-process-region 'org-babel-call-process-region-original)) (defun org-babel-expand-body:generic (body params optional var-lines) @@ -1028,7 +1031,8 @@ the current subtree. (sort (copy-sequence (nth 2 info)) (lambda (a b) (string (car a) (car b) (let* ((rm (lambda (lst) - (dolist (p '(replace silent append prepend)) + (dolist (p '(replace silent really-silent + append prepend)) (setq lst (remove p lst))) lst)) (norm (lambda (arg) @@ -1851,7 +1855,10 @@ RESULT-PARAMS can take the following values: replace - (default option) insert results after the source block replacing any previously inserted results -silent -- no results are inserted +silent -- no results are inserted into the Org-mode buffer but + the results are echoed to the minibuffer and are + ingested by Emacs (a potentially time consuming + process) file the results are interpreted as a file path, and are inserted into the buffer using the Org-mode file syntax -- 1.8.0 -- Eric Schulte http://cs.unm.edu/~eschulte
Re: [O] subtree-export limitations
On Fri, Nov 16, 2012 at 04:45:35PM +0100, Philipp Kroos wrote: So would be any other EXPORT_OPTIONS-line. The responsible function is org-export--get-subtree-options, which builds a list of already seen keywords. The lists members are then ignored if seen again. Is there any particular reason why this is done? Since Alan gave you a workaround, I will try to answer the why. I believe the reason behind this behaviour is properties are not designed to accumulate values. I believe there is a special case treatment for certain babel uses; as I'm hazy on the details, you have to look in the archives from about a year back (my memory tells me September 2011 to December 2011). You should look for discussions involving Rainer(?) and Eric Schulte. Hope this helps. -- Suvayu Open source is the future. It sets us free.
Re: [O] [PATCH] Change fontification order for links
Hello, Christophe Junke christophe.ju...@inria.fr writes: * lisp/org.el (org-set-font-lock-defaults): let footnote fontifications be done before other links' fontification. This allows links appearing inside footnotes to be both visible and active. TINYCHANGE --- lisp/org.el |2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lisp/org.el b/lisp/org.el index cfd8651..15b73aa 100644 --- a/lisp/org.el +++ b/lisp/org.el @@ -5901,13 +5901,13 @@ needs to be inserted at a specific position in the font-lock sequence.) '(1 'org-special-keyword t) '(3 'org-property-value t)) ;; Links +(if (memq 'footnote lk) '(org-activate-footnote-links)) (if (memq 'tag lk) '(org-activate-tags (1 'org-tag prepend))) (if (memq 'angle lk) '(org-activate-angle-links (0 'org-link t))) (if (memq 'plain lk) '(org-activate-plain-links)) (if (memq 'bracket lk) '(org-activate-bracket-links (0 'org-link t))) (if (memq 'radio lk) '(org-activate-target-links (0 'org-link t))) (if (memq 'date lk) '(org-activate-dates (0 'org-date t))) -(if (memq 'footnote lk) '(org-activate-footnote-links)) '(^?%%(.*\\|%%([^\n]*? (0 'org-sexp-date t)) '(org-hide-wide-columns (0 nil append)) ;; TODO keyword -- 1.7.9.5 Thank you for your patch. Unfortunately, for some reason, I cannot apply it on master. Would you mind updating Org and providing it again (assuming this is the reason for the error)? Regards, -- Nicolas Goaziou
Re: [O] Bug: Generation of pdf when using OPTIONS: H: faulty [7.9.2 (release_7.9.2-588-g8fb2cb @ /home/rkrug/.emacs.d/org-mode/lisp/)]
Rainer M Krug r.m.k...@gmail.com writes: in the pdf: Fit a linear model as a baseline is missing random intercept and slope is behind ... random effects The tex file looks fine, but the pdf is missing these. I just tried it again with manually running the file against pdflatex and it is missing as well. No idea what is wrong in the tex file, as I am just a basic LaTeX user. What happens if you remove src-blocks? It could be a bug with lstlistings environments. Regards, -- Nicolas Goaziou
Re: [O] Bug? R: Org babel block execution *drastically* slower than in ESS session directly
Hi Eric, Eric Schulte schulte.e...@gmail.com writes: Andreas Leha andreas.l...@med.uni-goettingen.de writes: t...@tsdye.com (Thomas S. Dye) writes: Aloha Aaron, Welcome to Org-mode. Aaron Ecay aarone...@gmail.com writes: 2012ko azaroak 13an, John Hendy-ek idatzi zuen: [...] Crazy. I really wondered if it had something to do with trying to spit out the results into the minibuffer. Why is that behavior included? “:results silent” just means “silent except for the minibuffer”; IDK why. [...] Just for the record: I would also love to see the really-silent results. Yes, the existing :results silent option still echos the results to the minibuffer. It was originally added in the case where one does not want to change the Org-mode buffer (but would still like to see code block output). The attached patch adds a really-silent results header argument. To see the impact compare the running time of the following two code blocks. #+begin_src sh :results really-silent seq 1 #+end_src #+begin_src sh :results silent seq 1 #+end_src Before such a patch is applied it would need corresponding documentation, and the really-silent moniker may need to be reconsidered in favor of something more informative (the main purpose of this header argument is not silence but is rather avoiding all post processing), and ideally shorter as well. These new header arguments are of no value if they are not easily discover-able and easily remember-able to help others avoid the same issue that launched this thread. Cheers, this is simply great! Thank a lot. I just tested and like it a lot! With respect to the name: I think choosing a new name is hard because it really should be silent. What is now silent would better be named minibuffer or sth. similar. But since changing that would break quite some (of my) code, I would suggest simply none for the new really-silent. Just my 2ct. Thanks again. I'll start using it right now. Regards, Andreas
Re: [O] source code disappears
When I switch to the ELPA version ( Org-mode version 7.9.2 (7.9.2-82-g2aeb28-elpa @ . . . )) this misbehavior is corrected. HTH.
Re: [O] Bug? R: Org babel block execution *drastically* slower than in ESS session directly
On Fri, Nov 16, 2012 at 11:47 AM, Andreas Leha andreas.l...@med.uni-goettingen.de wrote: Hi Eric, Eric Schulte schulte.e...@gmail.com writes: Andreas Leha andreas.l...@med.uni-goettingen.de writes: t...@tsdye.com (Thomas S. Dye) writes: Aloha Aaron, Welcome to Org-mode. Aaron Ecay aarone...@gmail.com writes: 2012ko azaroak 13an, John Hendy-ek idatzi zuen: [...] Crazy. I really wondered if it had something to do with trying to spit out the results into the minibuffer. Why is that behavior included? “:results silent” just means “silent except for the minibuffer”; IDK why. [...] Just for the record: I would also love to see the really-silent results. Yes, the existing :results silent option still echos the results to the minibuffer. It was originally added in the case where one does not want to change the Org-mode buffer (but would still like to see code block output). The attached patch adds a really-silent results header argument. To see the impact compare the running time of the following two code blocks. #+begin_src sh :results really-silent seq 1 #+end_src #+begin_src sh :results silent seq 1 #+end_src Before such a patch is applied it would need corresponding documentation, and the really-silent moniker may need to be reconsidered in favor of something more informative (the main purpose of this header argument is not silence but is rather avoiding all post processing), and ideally shorter as well. These new header arguments are of no value if they are not easily discover-able and easily remember-able to help others avoid the same issue that launched this thread. Cheers, this is simply great! Thank a lot. I just tested and like it a lot! I'll have to give this a try. With respect to the name: I think choosing a new name is hard because it really should be silent. What is now silent would better be named minibuffer or sth. similar. But since changing that would break quite some (of my) code, I would suggest simply none for the new really-silent. I like the none idea. Or another approach would be a variable/in-buffer setting that defines the meaning of silent? Something like =org-babel-echo-results-in-minibuffer= or something like that? Though perhaps folks would like to mix and match silent and none within the same document. Thanks for creating the patch, Eric. I'll try shortly. Best regards, John Just my 2ct. Thanks again. I'll start using it right now. Regards, Andreas
Re: [O] change the latex header per subtree
Nicolas Goaziou writes:
I don't get what you are telling me here, sorry.
You can have \input{my-special-headers-A.tex} somewhere in your class,
where my-special-headers-A.tex file contains some package collection.
Actually I'd write my own style file and give it appropriate arguments
and options if a fallback to LaTeX's devices is what you're proposing.
This may even be easier, but it introduces a dependency at yet another
place that I currently don't want to deal with. Thanks for the
suggestion anyway.
Regards,
Achim.
--
+[Q+ Matrix-12 WAVE#46+305 Neuron microQkb Andromeda XTk Blofeld]+
SD adaptation for Waldorf microQ V2.22R2:
http://Synth.Stromeko.net/Downloads.html#WaldorfSDada
Re: [O] Bug: Generation of pdf when using OPTIONS: H: faulty [7.9.2 (release_7.9.2-588-g8fb2cb @ /home/rkrug/.emacs.d/org-mode/lisp/)]
Nicolas Goaziou writes: What happens if you remove src-blocks? It could be a bug with lstlistings environments. I'm not familiar with lstlistings in particular, but like all verbatim environments it is prone to breakage. In this particular case it seems that a \paragraph can't start with a lstlisting environment, there must be some actual text (a ~ is enough). Regards, Achim. -- +[Q+ Matrix-12 WAVE#46+305 Neuron microQkb Andromeda XTk Blofeld]+ SD adaptation for Waldorf rackAttack V1.04R1: http://Synth.Stromeko.net/Downloads.html#WaldorfSDada
Re: [O] Bug? R: Org babel block execution *drastically* slower than in ESS session directly
Andreas Leha writes: I would suggest simply none for the new really-silent. Yes please, especially since I tried :results none two days ago to achieve that effect and wondered why it wouldn't work. :-) Regards, Achim. -- +[Q+ Matrix-12 WAVE#46+305 Neuron microQkb Andromeda XTk Blofeld]+ SD adaptations for Waldorf Q V3.00R3 and Q+ V3.54R2: http://Synth.Stromeko.net/Downloads.html#WaldorfSDada
[O] org-todo does not take into account quasi-todo-keywords
*** COMMENT MAYBE COMMENT MAYBE COMMENT hi If you change the todo keyword on a commented item, it puts in front. If you comment an item, it puts in front. -- The Kafka Pandemic: http://thekafkapandemic.blogspot.com The disease DOES progress. MANY people have died from it. ANYBODY can get it. There is no hope without action.
