date:20140805

Hi Bastien,

Bastien wrote:
 Sebastien Vauban writes:

 After an update to Org 8.2.7, I have troubles tangling files.

 Do you still see this?

No -- hopefully...

Closing this!

Best regards,
  Seb

-- 
Sebastien Vauban

Re: [O] Highlighting text for HTML mark tag export?

'Mash wrote:
 Just been looking around and I have not come across a way to highlight
 text in org-mode to be HTML exported as the mark.../mark tags?

 Anyone know if this exists?

You could use org-macros.

Or simply:

#+HTML: mark
...
#+HTML: /mark

Best regards,
  Seb

-- 
Sebastien Vauban

Re: [O] export quotes

Salome Södergran\ wrote:
 I'm looking for a way to make orgmode export quote signs to LaTeX's 
 \enquote{}.
 On stackoverflow.com (1) I found a solution that uses 
   (setq org-export-with-smart-quotes t)
   (add-to-list 'org-export-smart-quotes-alist .)
 but on my system I find neither the variable org-export-with-smart-quotes nor
 org-export-smartcodes-alist.

 Am I missing something or has the procedure been changed in the meanwhile?

You don't use Org mode 8, don't you?  Well, that'd explain...

Best regards,
  Seb

-- 
Sebastien Vauban

Re: [O] Can't execute the introductory code: take table as input to produce mean

Hello jenia,

 I want to learn babel-mode so I'm going through
 http://orgmode.org/worg/org-contrib/babel/intro.html#source-code-blocks-org.

 I'm trying to execute the basic tutorial's script and for some reason can't
 do it.

 I'm suppose to feed a table as input to a function. This is the table:

 #+name: tbl-example-data()
 #+begin_src R
 runif(n=5, min=0, max=1)
 #+end_src

 #+RESULTS: tbl-example-data
 |  0.607781215803698 |
 |  0.157157169422135 |
 |  0.675619817571715 |
 | 0.0488600700628012 |
 |  0.998780139256269 |

 The next function is the function to be executed:

 #+name: R-mean(x)
 #+begin_src R
 mean(x)
 #+end_src

 When I try to run it by pressing `C-c C-c`
 I get `variable x in block R-mean must be assigned a default value`.

 How do I run the function R-mean using the vlaues from tbl-example-data?

Add a variable to your code block:

  #+name: R-mean(x)
  #+begin_src R :var x=tbl-example-data
  mean(x)
  #+end_src

Best regards,
  Seb

-- 
Sebastien Vauban

Re: [O] bug: isearch puts ellipses at top of window

2014-08-05 Thread Nicolas Richard

Nicolas Richard theonewiththeevill...@yahoo.fr writes:

 Samuel Wales samolog...@gmail.com writes:

 in maint, isearch very often puts ... at the top of the window.  is
 this related to recent ellipsis bugs?

 If you have a reproducible recipe, it would be very nice !

I think I have something -- not with isearch but certainly related.
Unfortunately I'm not sure if this should be considered an emacs bug or
if it should be fixed in Outline or in Org, so I'll simply ask about it.
I did it on bug#18197.

-- 
Nico.

Re: [O] Tracking time estimates for incomplete tasks

2014-08-05 Thread Daniel Rigby

By the way, apologies for the multiple messages. I didn't receive any
feedback after sending them so I thought my emails were being silently ignored.

Re: [O] Archive subtrees hierarchical (keep the parent structure)

2014-08-05 Thread Florian Adamsky

Dear Eric,

On Tuesday, Aug 05 2014, Eric Abrahamsen e...@ericabrahamsen.net wrote:

 Thanks for this work -- I think this is a nice feature. One concern
 about the above is that, if you're archiving many FOOs, then you'll get
 a whole bunch of duplicate A/B parent structures. There are several
 places in my agenda files where I have the exact structure in your
 example, and a *whole* lot of FOOs going in and getting archived out.
 How hard would it be to look for an existing A/B parent structure in the
 archive file, and put FOO there if it's found? Not a perfect solution,
 since you might have more than one A/B, but seems like it would help in
 a majority of cases...

if I understand you correctly, then I have already implemented that. If
I would like to archive *** Foo, the function (fa/org-struct-subtree)
returns the parent headings as a list, e.g. (*A  ** B). Inside the
archive file, I search for * A and inside that heading I search for
** B. If ** B was not found, it inserts the remaining list that was
not found and does not create a new * A again. This means if you have
*A  and ** B already in your archive file it will not add a new A/B.

A problem exists if you have the exact same structure twice in one file like
the following example:

* A
** B
*** FOO

* A
** B
*** FOO

If you would archive both *** FOO, then the archive file would look like
this:

* A
** B
*** FOO
*** FOO

In order to fix that problem we need a unique id for every heading. My
current implementation implies that at least the first heading is
unique. Then it should not be a problem.

Best regards
--
Florian Adamsky
http://florian.adamsky.it/

Re: [O] Archive subtrees hierarchical (keep the parent structure)

2014-08-05 Thread Eric Abrahamsen

Florian Adamsky fa-orgm...@haktar.org writes:

 Dear Eric,

 On Tuesday, Aug 05 2014, Eric Abrahamsen e...@ericabrahamsen.net wrote:

 Thanks for this work -- I think this is a nice feature. One concern
 about the above is that, if you're archiving many FOOs, then you'll get
 a whole bunch of duplicate A/B parent structures. There are several
 places in my agenda files where I have the exact structure in your
 example, and a *whole* lot of FOOs going in and getting archived out.
 How hard would it be to look for an existing A/B parent structure in the
 archive file, and put FOO there if it's found? Not a perfect solution,
 since you might have more than one A/B, but seems like it would help in
 a majority of cases...

 if I understand you correctly, then I have already implemented that. If
 I would like to archive *** Foo, the function (fa/org-struct-subtree)
 returns the parent headings as a list, e.g. (*A  ** B). Inside the
 archive file, I search for * A and inside that heading I search for
 ** B. If ** B was not found, it inserts the remaining list that was
 not found and does not create a new * A again. This means if you have
 *A  and ** B already in your archive file it will not add a new A/B.

Excellent! That's just what I meant, and it sounds like you've already
taken care of it. Personally I don't mind if items get filed under the
wrong parent structure (in case of duplicate parent structures), but if
you wanted to do the unique id trick, that would be nice too!

Thanks,
Eric

 A problem exists if you have the exact same structure twice in one file like
 the following example:

 * A
 ** B
 *** FOO

 * A
 ** B
 *** FOO

 If you would archive both *** FOO, then the archive file would look like
 this:

 * A
 ** B
 *** FOO
 *** FOO

 In order to fix that problem we need a unique id for every heading. My
 current implementation implies that at least the first heading is
 unique. Then it should not be a problem.

 Best regards
 --
 Florian Adamsky
 http://florian.adamsky.it/

Re: [O] HTML lists are including paragraphs (lip…/p/li)

2014-08-05 Thread Eric Schulte

The code which checks to ensure that paragraph wrappers are only
inhibited if they are inhibited for the whole list mistakenly keeps
paragraph wrappers if one item of the list is itself a list

The location of this bug is the (cdr contents) in line 2899 of
ox-html.el.  I'd be inclined to remove this form, but I'm not sure what
valid case it checks for.

Best,
Eric

Daniel Clemente n142...@gmail.com writes:

 Hi. With latest org I'm getting lip…/p/li, which makes no
 sense; it should be li…/li
 Aren't there tests to find this type of breakages in export?


 Example:

 - hola
 - uno
   - dos
 - tres


 Is exported to:


 ul class=org-ul
 lip
 hola
 /p
 /li
 lip
 uno
 /p
 ul class=org-ul
 lidos
 /li
 /ul
 /li
 lip
 tres
 /p
 /li
 /ul


-- 
Eric Schulte
https://cs.unm.edu/~eschulte
PGP: 0x614CA05D (see https://u.fsf.org/yw)

[O] HTML export of - [ ] does not display box anymore

2014-08-05 Thread Rainer Stengele

Hi,

doing an html export of

* headline
  - [ ] checkbox
  - item

I do not see the checkbox box anymore as I did in older versions.
I tried to find an export setting, tried several settings related to todos but 
I cannot find a setting stopping the box to be exported.

Any hint where I could search for?

Regards, Rainer

Re: [O] Archive subtrees hierarchical (keep the parent structure)

2014-08-05 Thread Ken Mankoff

Hi Florian,

This code looks useful and an improvement over the previous setup I was
using. https://lists.gnu.org/archive/html/emacs-orgmode/2014-05/msg01218.html

Can you explain what else is needed for your code to work? Currently I
have

#+BEGIN_SRC emacs-lisp
(setq org-archive-location (concat org-directory /archive/%s_archive::))
#+END_SRC

But I don't see things archived as subtrees with just this. Do I need
new/different configuration to work with your code?

Thanks,

  -k.


* On 2014-08-04 at 15:29, Florian Adamsky wrote:
 Dear all,

 some of my org-mode files are getting bigger and bigger. So, I decided
 to use the archive feature to remove old stuff. However, I was not happy
 with the current archive feature, because it just puts subtrees
 unorganized in the archive file.

 I was more looking for a way to archive a subtree, but keep the parent
 structure. Means, if the point is at the subtree *** FOO in the
 following example:

 * A
 ** B
 *** FOO

 then it should copy the heading * A and ** B to the archive file and
 then move *** Foo to it. The only thing that I found was a feature
 request from Florian Lindner [fn:1]. A couple of days I was given it a
 shot and tried to implement that myself. Attached you'll find my
 attempt.

 It is a bit hackish, but it works for me. I think the attached code
 misses two features:
   1. it only copies the parent headings with tags, but ignores
   properties and stuff like that

   2. it ignores org-reverse-note-order, but that should not be too hard
   to add.

 Before I work on it again, I would like to hear your comments. Have I
 implemented functions that are already in org-mode? Is this feature
 useful for other people? Does it in more complicated org-mode files?

 Best regards

 Footnotes:

 [fn:1] https://lists.gnu.org/archive/html/emacs-orgmode/2014-05/msg01214.html

Re: [O] Highlighting text for HTML mark tag export?

'Mash Thomas Herbert wrote:
 Sebastien Vauban sva-n...@mygooglest.com writes:
 'Mash wrote:
 Just been looking around and I have not come across a way to highlight
 text in org-mode to be HTML exported as the mark.../mark tags?

 Anyone know if this exists?

 You could use org-macros.

 Or simply:

 #+HTML: mark
 ...
 #+HTML: /mark

 Thanks Sebastien, unfortunately this is not that useful if you simply
 want to highlight words or a sentence in a paragraph.

 Unfortunately using HTML markup in an org file, org-ruby doesn't parse
 these tags.

 Might be an interesting feature request to to coinside with _underline_,
 *bold*, etc

You can always update your definition of `org-emphasis-alist', but I'm
not sure Nicolas would say it's the right thing to do.

Note that I've always wanted to add such a new marker (marked up by `!')
that would be some sort of highlighting `alert' (and seen in red, for
example, in my Org buffer).

OTOH, having such could allow to have *...* mapped to bold and !...!
mapped to alert in both LaTeX and Beamer [1].

Best regards,
  Seb

[1] Right now, *...* is mapped to bold in LaTeX and to alert in Beamer.

-- 
Sebastien Vauban

Re: [O] numbering figure in html ?

Joseph Vidal-Rosset joseph.vidal.ros...@gmail.com writes:

 The following code works correctly to export into LaTeX, but the
 caption function fails in html. But caption works in html when it is
 above a table written in org-mode.

 #+OPTIONS: LaTeX:verbatim
 #+LaTeX_CLASS: org-article
 #+LaTeX_CLASS_OPTIONS: [koma,a4paper,11pt]
 #+LaTeX_CLASS_OPTIONS: [times]
 #+LANGUAGE: en
 #+OPTIONS: ':t
 #+OPTIONS: tex:t
 #+LATEX_HEADER: \usepackage{tikz}
 #+LaTeX_CLASS_OPTIONS: [captions=tableheading]
 #+OPTIONS: tex:imagemagick

 #+CAPTION: Classical square of opposition
 #+BEGIN_FIGURE
 \begin{tikzpicture}
 ...
 \end{tikzpicture}
 #+END_FIGURE


Yes, tables and source blocks handle captions in the HTML exporter, but
special blocks (which #+(BEGIN|END)_FIGURE is) don't. Captions for special
blocks *are* handled correctly in the latex exporter. This shouldn't be
too hard to fix: just copy the caption code from org-html-table to
org-html-special-block, but I won't have time to try it today. And then
there is the question of other exporters...

-- 
Nick

Re: [O] numbering figure in html ?

Joseph Vidal-Rosset joseph.vidal.ros...@gmail.com writes:


 The following code works correctly to export into LaTeX, but the
 caption function fails in html. But caption works in html when it is
 above a table written in org-mode.

 #+OPTIONS: LaTeX:verbatim
 #+LaTeX_CLASS: org-article
 #+LaTeX_CLASS_OPTIONS: [koma,a4paper,11pt]
 #+LaTeX_CLASS_OPTIONS: [times]
 #+LANGUAGE: en
 #+OPTIONS: ':t
 #+OPTIONS: tex:t
 #+LATEX_HEADER: \usepackage{tikz}
 #+LaTeX_CLASS_OPTIONS: [captions=tableheading]
 #+OPTIONS: tex:imagemagick

 #+CAPTION: Classical square of opposition
 #+BEGIN_FIGURE
 ...
 #+END_FIGURE


BTW, the HTML also has the figure wrapped in p.../p which I think is
wrong. I wonder if it's an instance of the bug that Daniel Clemente
pointed out in

http://thread.gmane.org/gmane.emacs.orgmode/89413

although at first glance, it seems distant enough to be unrelated.
-- 
Nick

Re: [O] [RFC] Rewrite `org-entry-properties' using parser

Nicolas Goaziou m...@nicolasgoaziou.fr writes:

 Hello,

 Thorsten Jolitz tjol...@gmail.com writes:

 here is my first take of rewriting `org-entry-properties'.

 Interesting. A first round of comments follows.

Thanks for the review and the comments. But this looks like an entirely
different function to me, and IMO it does not make much sense that you
explain what you want and I type it in (because instead of explaining
you could just as well type it yourself in the same time), so I rather
leave this to you (or whoever wants to do it).

-- 
cheers,
Thorsten

Re: [O] make slim auto-complete work in Org-mode (delete some ac-source in Org-mode).

stardiviner wrote:
 I setup default =ac-sources= for auto-complete like this:

 #+BEGIN_SRC emacs-lisp
 (setq-default ac-sources
   '(ac-source-yasnippet
 ac-source-abbrev
 ac-source-filename
 ac-source-files-in-current-dir
 ac-source-dictionary
 ac-source-words-in-same-mode-buffers
 ))
 #+END_SRC

 And I found =ac-source-dictionary= and =ac-source-words-in-same-mode-buffers= 
 is
 heavy for Org-mode, So I try to remove them only in Org-mode.

Do you have some evidence of this?  Profiling with/without?  It'd be
interesting.

Other point: I'm surprised you don't have the source
`ac-source-words-in-buffer' (maybe instead of
`ac-source-words-in-same-mode-buffers')...

Best regards,
  Seb

-- 
Sebastien Vauban

Re: [O] [RFC] Add commmand for wrapping sexp/region in src-blocks to Org?

Xebar Saram zelt...@gmail.com writes:

Hi Xebar,

 small question.

sorry for the late answer

 i wonder if i could request a tiny related feature (this may be very
 easy to do already).
 i would like to assign hotkeys for 2 scenarios:

 1) pre selected language for 1 line
 2) pre selected language prompting for number of lines to wrap

 so IE id assign F9-b to auto wrap current line with bash syntax while
 F9-l would wrap in lisp
 also F10-b would prompt me how man lines to wrap in bash etc

 is that possible?

I think so, I have some predefined calls to that function with global
keybindings in my init file (right now I call it `tj/wrap-in-src-block',
you might have to adapt this):

(global-set-key (kbd C-c w l)
(lambda ()
  (interactive)
  (let ((current-prefix-arg '(4)))
 (call-interactively
  'tj/wrap-in-src-block

(global-set-key (kbd C-c w n)
(lambda ()
  (interactive)
  (let ((current-prefix-arg '(16)))
 (call-interactively
  'tj/wrap-in-src-block

(global-set-key (kbd C-c w w) 'tj/wrap-in-src-block)


 1) pre selected language for 1 line

e.g.
(global-set-key (kbd C-c w y)
(lambda ()
  (interactive)
  (tj/wrap-in-src-block shell 1)))


 2) pre selected language prompting for number of lines to wrap

emacs-lisp is kind of preselected, but you could add this after the
((equal current-prefix-arg '(16)) ...) part


((equal current-prefix-arg '(64))
 (list
 shell
  (read-number Number of lines to wrap:  1)))

and then

(global-set-key (kbd C-c w z)
(lambda ()
  (interactive)
  (let ((current-prefix-arg '(64)))
 (call-interactively
  'tj/wrap-in-src-block

everything untested, unfortunately ...
-- 
cheers,
Thorsten

Re: [O] [RFC] Add commmand for wrapping sexp/region in src-blocks to Org?

Nicolas Goaziou m...@nicolasgoaziou.fr writes:

Hello,

 Why limiting it to ...

I'll leave it as personnal init.el customization, maybe it evolves over
time towards a function that deals with the general case. Thanks for the
comments though.

-- 
cheers,
Thorsten

Re: [O] HTML export of - [ ] does not display box anymore

2014-08-05 Thread Rick Frankel


On 2014-08-05 08:25, Rainer Stengele wrote:

Hi,

doing an html export of

* headline
- [ ] checkbox
- item

I do not see the checkbox box anymore as I did in older versions.
I tried to find an export setting, tried several settings related to
todos but I cannot find a setting stopping the box to be exported.

Any hint where I could search for?


Checkbox export is handled by a constant and a custom variable:

- `org-html-checkbox-types' :: A constant defining the output for
unicode (entity), ascii, and html (form) versions of the
checkboxes.
- `org-html-checkbox-type' :: A customizable variable defining
which version of the above to use. The default is ascii,
which should result in backwards compatible output.

Here's the output i get for your list above (using the default ascii
option):

ul class=org-ul
li class=offcode[#xa0;]/code checkbox
/li
liitem
/li
/ul

which seems correct to me.

[O] How to mark headings to be exclude from inclusion in tangling or weaving?

2014-08-05 Thread Grant Rettke

Good morning,

My system is set up to tangle and weave an org file into a .emacs.el
file. By ensuring property inheritance is configured like this

╭
│ (setq org-babel-use-quick-and-dirty-noweb-expansion nil)
╰

, each heading takes properties from its parents.

Sometimes I don't want that inheritance to occur for one specific
sub-heading, though, and I want to know, what is the best way to go
about that?

My current approach, which works, but is probably wrong, is to give the
property to the subheading of:

╭
│ :PROPERTIES:
│ :noweb-ref: ignore-r-config
│ :END:
╰

which seems to exclude it from export or tangling. Then later when I
tangle the file, noweb expansion lets me put this where I want.

What is going on here is that I've got a programming configuration
section, and it makes sense to keep it all together, but for the fact
that 90% of that config goes into the .emacs.el an 10% of goes into
another config file, so I do need to exclude and put somewhere else
that 10%.

emacs GNU Emacs 24.3.1 (x86_64-apple-darwin13.2.0, Carbon Version 1.6.0
AppKit 1265.2)\n of 2014-07-03 on orion

org 8.2.7a

Kind regards,

Grant Rettke | ACM, ASA, FSF, IEEE, SIAM g...@wisdomandwonder.com |
[http://www.wisdomandwonder.com/] “Wisdom begins in wonder.” –Socrates
((λ (x) (x x)) (λ (x) (x x))) “Life has become immeasurably better since
I have been forced to stop taking it seriously.” –Thompson

Re: [O] bug#17749: 24.3.91; Crash on mwheel-scroll of org file

2014-08-05 Thread Eli Zaretskii

 From: Vladimir Alexiev vladimir.alex...@ontotext.com
 Cc: 17...@debbugs.gnu.org,
   emacs-orgmode@gnu.org
 Date: Tue, 5 Aug 2014 11:10:16 +0300

   1. Open emacs-crash-test.org
   2. Make the window smaller (e.g. 20 lines tall)
   2. Roll the mouse wheel down until you see the end of file, then up.
   3. CRASH

 The specific org file doesn't matter.
 The window size doesn't matter.
 This crash happens to me occasionally (2-3 times a week), always on an org 
 file, always on mwheel-up (which invokes mwheel-scroll).

 Eli, can you tell something from the backtrace here?
 http://lists.gnu.org/archive/html/emacs-orgmode/2014-06/txtkIBvnmHi_F.txt

No, sorry.  I really need to reproduce this on my machine and run
Emacs under a debugger to see what happens and why.

Please try to come up with a recipe starting from emacs -Q.  It is
OK to include customizations and loading of optional packages, but
please try to find the minimal set of those, as too many of them
complicate debugging.

  This is an assertion violation, not a crash.

 The failing assertion causes a crash, so I'm not sure what's the difference. 
 Is there an emacs build that doesn't crash on eassert() failure?

If Emacs is configured without --enable-checking (which is what
happens in released versions), all the eassert lines compile to
nothing.

  Some assumption in the
  code turned out to be false, but it is not possible to know which one,
  and whether it's just a wrong assumption or a real problem.

 It seems the assertion does basic consistency checks of the IT structure.

Yes.  But without details, I cannot know what caused it or how to fix
it.

 What is it-bidi_p? I don't use BIDI text: this happens on ascii org files.

The display engine always works in bidirectional mode, this has been
so since Emacs 24.1.

Re: [O] How to define file-local preamble for graphviz dot?

2014-08-05 Thread Vladimir Alexiev

Vladimir Alexiev vladimir.alexiev at ontotext.com writes:

 I have a bunch of dot settings that I want to set globally. I hacked it like 
 this:
 (defadvice org-babel-expand-body:dot (before add-preamble (body params) 
 activate)

A better way to hack it is like that, using the header args :prologue and 
:epilogue

(eval-after-load ob-dot
  ' (progn
  (add-to-list 'org-babel-default-header-args:dot
   '(:cache . yes))
  (add-to-list 'org-babel-default-header-args:dot
   '(:prologue . digraph g {
  rankdir=LR nodesep=0.2 ranksep=0.1 arrowsize=0.2
  node [fontname=courier fontsize=10 margin=\0.02,0.01\ shape=box width=0.1 
height=0.1]
  edge [fontname=courier fontsize=8 labelfontname=courier labelfontsize=8]))
  (add-to-list 'org-babel-default-header-args:dot
   '(:epilogue . }

Unfortunately ob-dot doesn't interpret :prologue and :epilogue, so I adviced it:

(defadvice org-babel-expand-body:dot (before prologue-epilogue activate)
  Interpret :prologue and :epilogue headers, like 
org-babel-expand-body:generic
  (let ((pro (cdr-safe (assoc :prologue params)))
(epi (cdr-safe (assoc :epilogue params
(setq body (mapconcat #'identity
  (append (when pro (list pro))
  (list body)
  (when epi (list epi)))
  \n

Then in a particular file I can override the :prologue like so:

* Local Variables :noexport:
Local Variables:
eval: (setq-local org-babel-default-header-args:dot (cons '(:prologue . 
digraph g {
  rankdir=LR nodesep=0.2 ranksep=0.3 arrowsize=0.1
  node [fontname=courier fontsize=8 margin=\0.02,0.01\ shape=circle 
width=0.25 height=0.25 label=\\]
  edge [fontname=courier fontsize=8 labelfontname=courier labelfontsize=8])
  (cl-remove :prologue org-babel-default-header-args:dot :key 'car :test 'eq)))
End:

This works, although it asks for confirmation every time the file is loaded.
Trying to do it with a code block:

#+BEGIN_SRC emacs-lisp :results silent :exports none
#+END_SRC

didn't work because that code is not executed automatically on export.

[O] ox-reveal cannot export

2014-08-05 Thread Robert Eckl

Hi,

after a long time i recently played with ox-reveal (with
org-mode release_8.3beta-167-g003edd) 

While exporting to reveal i get 

  Symbol's function definition is void: org-html-format-headline--wrap

What i'm missing?

Regards,
Robert

[O] Problems with org-export: byte-code: Invalid function: 0

2014-08-05 Thread Martin Beck

Im doing my first steps trying to publish my org-mode content to HTML and it seems that there is something that causes problems with publishing.



I tracked it down to this paragraph which seems to cause the problem:


 _ 

Connect at AIIM is a news communication provided by AIIM. 2014

AIIM - The Global Community of Information Professionals
1100 Wayne Avenue, Suite 1100, Silver Spring, MD 20910 USA
Phone: 301-587-8202 resource://skype_ff_extension-at-jetpack/skype_ff_extension/data/call_skype_logo.png301-587-8202
The IT Centre, 8 Canalside, Lowesmoor Wharf, Worcestershire, WR1 2RR UK
Tel: +44 (0) 1905 727600 resource://skype_ff_extension-at-jetpack/skype_ff_extension/data/call_skype_logo.png+44 (0) 1905 727600
 _ 



(in my org-mode document, the linebreaks are visible only as ^M)



Can somebody tell me whats the problem here?

When trying C-c C-e h o

I get this error message: Invalid function: 0



Kind regards



Martin

Re: [O] Filtering org-clock-display

2014-08-05 Thread Noah Slater

Hello Bastien,

I can't get this to work.

(org-clock-display '(16)) -- this works fine!

(let ((org-clock-display-default-range 'thisweek))
  (org-clock-display))

^ This however just runs org-clock-display for all time without a prompt.

I have updated to HEAD and ran `make`.


On 28 July 2014 17:45, Bastien b...@gnu.org wrote:

 Hi Noah,

 Noah Slater nsla...@tumbolia.org writes:

  Can I pass in the range when calling it from a function?

 Not directly.

 (org-clock-display '(16)) will interactively prompt for a range.

 (let ((org-clock-display-default-range 'thisweek))
   (org-clock-display))

 will display the clock with the new option
 `org-clock-display-default-range' set to thisweek.

 HTH,

 --
  Bastien

Re: [O] Archive subtrees hierarchical (keep the parent structure)

2014-08-05 Thread Florian Adamsky

Dear Ken,

On Tuesday, Aug 05 2014, Ken Mankoff wrote:

 This code looks useful and an improvement over the previous setup I was
 using. https://lists.gnu.org/archive/html/emacs-orgmode/2014-05/msg01218.html

 Can you explain what else is needed for your code to work? Currently I
 have

at the moment, I just run the function org-archive-subtree-hierarchical
interactively.

 #+BEGIN_SRC emacs-lisp
 (setq org-archive-location (concat org-directory /archive/%s_archive::))
 #+END_SRC

 But I don't see things archived as subtrees with just this. Do I need
 new/different configuration to work with your code?

No, just run M-x org-archive-subtree-hierarchical. I tried the code with
the latest org-mode version 8.3beta and with emacs -q and in both cases
it works without problems.

However, if you set the following variable to the new function, it
should work with the default keybinding for org-archive:

#+BEGIN_SRC emacs-lisp
(setq org-archive-default-command 'org-archive-subtree-hierarchical)
#+END_SRC

If you have any trouble, please give me a note.

Best
--
Florian Adamsky
http://florian.adamsky.it/

[O] [PATCH] Couple of small fixes in exporting node.js and css content.

2014-08-05 Thread Josh Berry

I've got a toy paper I'm writing where I ran into a couple of issues
exporting to html.  The first issue is related to exporting the source of a
css block that contains proprietary properties.  In short, it looks like a
list is generated for the font face, where a single value was expected.

The second issue may be my fault, so if there is a setting I should change
on my end, apologies and I'll set said setting.  Basically, there is a
cutoff value whereby node.js will insert newlines into the results.  This
was incredibly frustrating as what was turning into a decent looking table
would suddenly become garbage.

In both cases, I did not add a test file.  If it is enough to just copy an
existing test file and trim it down to just these two items, I can
certainly do that.

Finally, apologies if I am doing this incorrectly.  I tried following the
directions on how to contribute as well as I could.

Thanks!

-josh

p.s.  The toy paper is here: http://taeric.github.io/DancingLinks.html
From 0441982a9457f9bbd953a06ab4fa830c6ffc967b Mon Sep 17 00:00:00 2001
From: Josh Berry tae...@gmail.com
Date: Mon, 4 Aug 2014 22:45:43 -0400
Subject: [PATCH 1/2] Fix css export when proprietary properties are used

* htmlize.el (htmlize-face-size): Check for a list instead of a single
  font face.

`face-attribute' does not act kindly to being given a list of faces.

TINYCHANGE
---
 contrib/lisp/htmlize.el | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/contrib/lisp/htmlize.el b/contrib/lisp/htmlize.el
index 3bf5949..6654f40 100644
--- a/contrib/lisp/htmlize.el
+++ b/contrib/lisp/htmlize.el
@@ -1079,7 +1079,7 @@ If no rgb.txt file is found, return nil.
   (let ((size-list
 	 (loop
 	  for f = face then (face-attribute f :inherit)
-	  until (or (not f) (eq f 'unspecified))
+	  until (or (not f) (eq f 'unspecified) (listp f))
 	  for h = (face-attribute f :height)
 	  collect (if (eq h 'unspecified) nil h
 (reduce 'htmlize-merge-size (cons nil size-list
-- 
1.9.1

From 792b89a0922ee21bd0155f68adb0ce07c2558a51 Mon Sep 17 00:00:00 2001
From: Josh Berry tae...@gmail.com
Date: Mon, 4 Aug 2014 22:46:46 -0400
Subject: [PATCH 2/2] Fix javascript exporting of results from node.js

* ob-js.el (org-babel-js-read): Expand regexps to account for newlines
  in output from node.js

It may be possible to instruct node.js to not insert line breaks
automatically.  Was not difficult to fix the regular expressions to
account for newlines, though.

I did *not* add a test file that goes over this, as I did not see one
already for ob-js.el.  I can certainly add one, if desired.

TINYCHANGE
---
 lisp/ob-js.el | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/lisp/ob-js.el b/lisp/ob-js.el
index 7789449..9d956cc 100644
--- a/lisp/ob-js.el
+++ b/lisp/ob-js.el
@@ -97,13 +97,13 @@ This function is called by `org-babel-execute-src-block'
 If RESULTS look like a table, then convert them into an
 Emacs-lisp table, otherwise return the results as a string.
   (org-babel-read
-   (if (and (stringp results) (string-match ^\\[.+\\]$ results))
+   (if (and (stringp results) (string-match ^\\[[\0-\377[:nonascii:]]*\\]$ results))
(org-babel-read
 (concat '
 (replace-regexp-in-string
  \\[ ( (replace-regexp-in-string
 \\] ) (replace-regexp-in-string
-   ,(replace-regexp-in-string
+   ,\\W   (replace-regexp-in-string
 		 ' \ results))
  results)))
 
-- 
1.9.1

[O] [PATCH] Couple of small fixes in exporting node.js and css content.

2014-08-05 Thread Josh Berry

I've got a toy paper I'm writing where I ran into a couple of issues
exporting to html.  The first issue is related to exporting the source of a
css block that contains proprietary properties.  In short, it looks like a
list is generated for the font face, where a single value was expected.

The second issue may be my fault, so if there is a setting I should change
on my end, apologies and I'll set said setting.  Basically, there is a
cutoff value whereby node.js will insert newlines into the results.  This
was incredibly frustrating as what was turning into a decent looking table
would suddenly become garbage.

In both cases, I did not add a test file.  If it is enough to just copy an
existing test file and trim it down to just these two items, I can
certainly do that.

Finally, apologies if I am doing this incorrectly.  I tried following the
directions on how to contribute as well as I could.

Thanks!

-josh

p.s.  The toy paper is here: http://taeric.github.io/DancingLinks.html
Feedback welcome!

Re: [O] ox-reveal cannot export

Robert Eckl eck...@gmx.de writes:

 Hi,

 after a long time i recently played with ox-reveal (with
 org-mode release_8.3beta-167-g003edd) 

 While exporting to reveal i get 

   Symbol's function definition is void: org-html-format-headline--wrap

 What i'm missing?


Well, you are missing that function :-)

Nicolas removed it in commit c9ca0b6df86de13a5302b5a3c955fb2fb1023d36 a
couple of days ago.  It's still in the maint branch, so you might want
to switch to that in the meantime, if you want to continue experimenting
with the reveal exporter.

Nick

[O] (Maybe) enhance `org-element-src-block-interpreter'?


Hi, 

a slight enhancement:

#+begin_src emacs-lisp
  (defun tj/src-block-interpreter (src-block contents)
Interpret SRC-BLOCK element as Org syntax.  CONTENTS is nil.
(let ((lang (org-element-property :language src-block))
  (switches (org-element-property :switches src-block))
  (params (org-element-property :parameters src-block))
  (headers (org-element-property :header src-block))
  (value
   (let ((val (org-element-property :value src-block)))
 (cond
  ((or org-src-preserve-indentation
   (org-element-property :preserve-indent src-block))
   val)
  ((zerop org-edit-src-content-indentation) val)
  (t
   (let ((ind (make-string
   org-edit-src-content-indentation ?\s)))
 (replace-regexp-in-string
  \\(^\\)[ \t]*\\S- ind val nil nil 1))
  packed-headers)
  (concat (format %s#+BEGIN_SRC%s\n
  (progn
(while headers
  (setq packed-headers
(concat
 (format #+HEADER: %s\n
 (pop headers))
 packed-headers)))
(or packed-headers ))
  (concat (and lang (concat   lang))
  (and switches (concat   switches))
  (and params (concat   params
  (org-escape-code-in-string value)
  ;; (save-match-data
  ;;   (if (looking-at ^$)  \n))
  #+END_SRC)))
#+end_src

#+results:
: tj/src-block-interpreter

Parse this src-block (with point at beg of block):

,
| M-: (setq ptree (org-element-at-point))
`

#+header: :results raw
#+begin_src emacs-lisp
(message hello world)
#+end_src

#+results:
hello world

Then evaluate

#+begin_src emacs-lisp
(org-element-src-block-interpreter ptree nil)
#+end_src

#+results:
: #+BEGIN_SRC emacs-lisp
:   (message hello world)
: #+END_SRC

#+begin_src emacs-lisp
(tj/src-block-interpreter ptree nil)
#+end_src

#+results:
: #+HEADER: :results raw
: #+BEGIN_SRC emacs-lisp
:   (message hello world)
: #+END_SRC


-- 
cheers,
Thorsten

Re: [O] Problems with org-export: byte-code: Invalid function: 0

Martin Beck elwood...@web.de writes:

 I'm doing my first steps trying to publish my org-mode content to HTML and it 
 seems that there is something that causes problems
 with publishing.
  
 I tracked it down to this paragraph which seems to cause the problem:
   _  
 Connect at AIIM is a news communication provided by AIIM. 2014
 AIIM - The Global Community of Information Professionals
 1100 Wayne Avenue, Suite 1100, Silver Spring, MD 20910 USA
 Phone: 301-587-8202 
 resource://skype_ff_extension-at-jetpack/skype_ff_extension/data/call_skype_logo.png301-587-8202
 The IT Centre, 8 Canalside, Lowesmoor Wharf, Worcestershire, WR1 2RR  UK
 Tel: +44 (0) 1905 727600 
 resource://skype_ff_extension-at-jetpack/skype_ff_extension/data/call_skype_logo.png+44
  (0) 1905 727600
   _  
  
 (in my org-mode document, the linebreaks are visible only as ^M)
  
 Can somebody tell me what's the problem here?
 When trying C-c C-e h o
 I get this error message: Invalid function: 0
  

This may be a problem in your setup.  Please set the variable
debug-on-error to t, try to publish and post the resulting backtrace.

Alternatively, try restarting your emacs: it may have acquired a setting
inadvertently that causes problems. You might also try without most of
your customizations (emacs -q), but loading a minimal file that just
sets up org and the publishing project.

Nick

[O] (Maybe) refactor `org-babel-insert-header-arg'?


Hi, 

maybe make parts of `org-babel-insert-header-arg' reusable by a
refactoring like this?

;; refactored org-babel-insert-header-arg (part 1)
#+begin_src emacs-lisp
(defun tj/prompt-for-header-arg (optional lang)
  Prompt for header argument selecting from lists of common args and values.
Optional argument LANG specifies the Org Babel language.
  (interactive)
  (let* ((curr-block (ignore-errors
   (org-babel-goto-src-block-head)
   (org-element-src-block-parser
(point-max) nil)))
 (lang (or lang
   (condition-case err
   (org-element-property :language curr-block)
 (error Cannot determine language
 (lang-headers (intern
(concat org-babel-header-args: lang)))
 (headers (org-babel-combine-header-arg-lists
   org-babel-common-header-args-w-values
   (when (boundp lang-headers)
 (eval lang-headers
 (header-arg (org-icompleting-read
  Header Arg: 
  (mapcar
   (lambda (header-spec)
 (symbol-name (car header-spec)))
   headers)))
 (vals (cdr (assoc (intern header-arg) headers)))
 (value (cond
 ((eq vals :any)
  (read-from-minibuffer value: ))
 ((listp vals)
  (mapconcat
   (lambda (group)
 (let ((arg (org-icompleting-read
 Value: 
 (cons default
   (mapcar #'symbol-name
   group)
   (if (and arg
(not (string= default arg)))
   (concat arg  )
 )))
   vals )
(cons header-arg value)))
#+end_src

;; refactored org-babel-insert-header-arg (part 2)
#+begin_src emacs-lisp
(defun tj/insert-header-arg (header-arg optional value keyword-p)
  Insert HEADER-ARG with (optional) VALUE on header line.
If optional arg KEYWORD-P is non-nil, insert as separate
'#+header:' line on top of src-block.
  (when (ignore-errors (org-babel-goto-src-block-head))
(if keyword-p
(progn
  (newline)
  (forward-line -1)
  (insert (format #+header: :%s%s
  header-arg
  (if value (concat   value) 
  (save-excursion
(goto-char (point-at-eol))
(unless (= (char-before (point)) ?\ ) (insert  ))
(insert : header-arg)
(when value (insert   value))
#+end_src

-- 
cheers,
Thorsten

Re: [O] Cannot build documentation (release_8.3beta-155-g82b64d)

2014-08-05 Thread Vicente Vera

Hello. Started another clean cloned local repository to try building the
documentation again and the errors persist.
'M-x org-version' gives: Org-mode version 8.3beta
(release_8.3beta-167-g003edd @ /usr/local/share/emacs/site-lisp/org/). I
installed everything except documentation.
Here's the output of 'make doc':

make -C doc info
make[1]: Entering directory
`/home/vicente/descarga/org-master-git-20140804/org-mode/doc'
makeinfo --no-split org.texi -o org
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:16382:
Cross reference to nonexistent node `Using
 multiple #+TBLFM lines' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:16073:
Cross reference to nonexistent node `External
 links' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:15543:
Cross reference to nonexistent node `Code evaluation
 security' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:15284:
Cross reference to nonexistent node `Property
 inheritance' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:14501:
Cross reference to nonexistent node `Evaluating code
 blocks' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:14219:
Cross reference to nonexistent node `Evaluating
 code blocks' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:14214:
Cross reference to nonexistent node `Code
 evaluation security' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:14164:
Cross reference to nonexistent node `Library
 of Babel' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:13386:
Cross reference to nonexistent node `HTML
 export' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:12927:
Cross reference to nonexistent node `Evaluating
 code blocks' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:12214:
Cross reference to nonexistent node `Column width and
 alignment' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:12095:
Cross reference to nonexistent node `Configuring a
 document converter' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:11247:
Cross reference to nonexistent node `Radio
 targets' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:10783:
Cross reference to nonexistent node `Export
 settings' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:10499:
Cross reference to nonexistent node `In-buffer
 settings' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:10344:
Cross reference to nonexistent node `Literal
 examples' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:10173:
Cross reference to nonexistent node `Math formatting in
 HTML export' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:10013:
Cross reference to nonexistent node `Generating
 an index' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:9918:
Cross reference to nonexistent node `Text
 areas in HTML export' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:9846:
Cross reference to nonexistent node `Plain
 lists' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:9609:
Cross reference to nonexistent node `Document
 structure' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:8779:
Cross reference to nonexistent node `Filtering/limiting
 agenda items' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:8134:
Cross reference to nonexistent node `Property
 inheritance' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:8012:
Cross reference to nonexistent node `Agenda
 commands' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:7816:
Cross reference to nonexistent node `Agenda
 commands' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:7719:
Cross reference to nonexistent node `Matching
 tags and properties' (perhaps incorrect sectioning?).
/home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:7197:
Cross reference to nonexistent node

Re: [O] Archive subtrees hierarchical (keep the parent structure)

2014-08-05 Thread Ken Mankoff

Hi Florian,

* On 2014-08-05 at 11:32, Florian Adamsky wrote:
 This code looks useful and an improvement over the previous setup I
 was
 using. https://lists.gnu.org/archive/html/emacs-orgmode/2014-05/msg01218.html

 Can you explain what else is needed for your code to work? Currently I
 have

 No, just run M-x org-archive-subtree-hierarchical. I tried the code
 with the latest org-mode version 8.3beta and with emacs -q and in both
 cases it works without problems.

 However, if you set the following variable to the new function, it
 should work with the default keybinding for org-archive:

 #+BEGIN_SRC emacs-lisp
 (setq org-archive-default-command 'org-archive-subtree-hierarchical)
 #+END_SRC

 If you have any trouble, please give me a note.

You are correct that M-x org-archive-subtree-hierarchical works just
fine. But I can't get it to work with the default keybinding as you show
above. 

C-c C-x C-s is my (the?) default keybinding for archiving
trees/subtrees.  Is this the correct keybinding?

When I describe that with C-h k C-c C-x C-s I see:

 C-c C-x C-s runs the command org-advertized-archive-subtree, which is
 an alias for `org-archive-subtree' in `org.el'.

 It is bound to C-c C-x C-s, menu-bar Org Archive Move Subtree
 to Archive file.
 
 (org-advertized-archive-subtree optional FIND-DONE)

So I have tried mapping all of those to call the new function:

(setq org-archive-default-command 'org-archive-subtree-hierarchical)
(setq org-archive-subtree 'org-archive-subtree-hierarchical)
(setq org-advertized-archive-subtree 'org-archive-subtree-hierarchical)

But it still doesn't work. I can bind org-archive-subtree-hierarchical
directly to C-c C-x C-s, which will work. Is that the correct solution?

Thanks,

  -k.

Re: [O] Cannot build documentation (release_8.3beta-155-g82b64d)

Vicente Vera vicente...@gmail.com writes:

 Hello. Started another clean cloned local repository to try building the 
 documentation again and the errors persist.
 'M-x org-version' gives: Org-mode version 8.3beta 
 (release_8.3beta-167-g003edd @ /usr/local/share/emacs/site-lisp/org/). I
 installed everything except documentation.
 Here's the output of 'make doc':

 make -C doc info
 make[1]: Entering directory 
 `/home/vicente/descarga/org-master-git-20140804/org-mode/doc'
 makeinfo --no-split org.texi -o org
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:16382: 
 Cross reference to nonexistent node `Using
  multiple #+TBLFM lines' (perhaps incorrect sectioning?).
 ...

I can't reproduce it. What version of makeinfo are you using?
Mine says:

,
| $ makeinfo --version
| makeinfo (GNU texinfo) 5.1
| 
| Copyright (C) 2013 Free Software Foundation, Inc.
| License GPLv3+: GNU GPL version 3 or later http://gnu.org/licenses/gpl.html
| This is free software: you are free to change and redistribute it.
| There is NO WARRANTY, to the extent permitted by law.
`

Nick

Re: [O] Emacs-orgmode Digest, Vol 102, Issue 5

2014-08-05 Thread Salome =?iso-8859-1?Q?S=F6dergran

 Salome S?dergran\ wrote:
  I'm looking for a way to make orgmode export quote signs to LaTeX's 
  \enquote{}.
  On stackoverflow.com (1) I found a solution that uses 
(setq org-export-with-smart-quotes t)
(add-to-list 'org-export-smart-quotes-alist .)
  but on my system I find neither the variable org-export-with-smart-quotes 
  nor
  org-export-smartcodes-alist.
 
  Am I missing something or has the procedure been changed in the meanwhile?
 
 You don't use Org mode 8, don't you?  Well, that'd explain...
 
 Best regards,
   Seb
 
 -- 
 Sebastien Vauban

With M-x org-version I get: 
  Org-mode version 8.2.7b (8.2.7b-2-g798733-elpaplus @ 
/home/salome/.emacs.d/elpa/org-plus-contrib-20140721/)

So the version ought to be ok. What else could be the reason for the missing 
variables?

Best, Salome

Re: [O] numbering figure in html ?

2014-08-05 Thread Joseph Vidal-Rosset

2014-08-05 14:43 GMT+02:00 Nick Dokos ndo...@gmail.com:

 Yes, tables and source blocks handle captions in the HTML exporter, but
 special blocks (which #+(BEGIN|END)_FIGURE is) don't. Captions for special
 blocks *are* handled correctly in the latex exporter. This shouldn't be
 too hard to fix: just copy the caption code from org-html-table to
 org-html-special-block, but I won't have time to try it today. And then
 there is the question of other exporters...



Dear Nick,

I leave the question open to  developers; I am not able to find the
solution by myself, I have to much to learn. Sorry.

It is not a hurry, and it is not a real problem for me. I hope that this
email will help to improve org-mode again.

Best wishes

Jo.

Re: [O] Emacs-orgmode Digest, Vol 102, Issue 5

Salome Södergran\ salome.soederg...@gmx.ch writes:

 Salome S?dergran\ wrote:
  I'm looking for a way to make orgmode export quote signs to LaTeX's 
  \enquote{}.
  On stackoverflow.com (1) I found a solution that uses 
(setq org-export-with-smart-quotes t)
(add-to-list 'org-export-smart-quotes-alist .)
  but on my system I find neither the variable org-export-with-smart-quotes 
  nor
  org-export-smartcodes-alist.
 
  Am I missing something or has the procedure been changed in the meanwhile?
 
 You don't use Org mode 8, don't you?  Well, that'd explain...
 
 Best regards,
   Seb
 
 -- 
 Sebastien Vauban

 With M-x org-version I get: 
   Org-mode version 8.2.7b (8.2.7b-2-g798733-elpaplus @ 
 /home/salome/.emacs.d/elpa/org-plus-contrib-20140721/)

 So the version ought to be ok. What else could be the reason for the missing 
 variables?


The variable is defined in ox.el. Try

  M-x locate-library RET ox RET

and if that shows the right provenance, try

  M-x load-library RET ox-le RET

and see if the variable is defined. But note that you *should not have*
to do this: it should work right off the bat.

If the problem persists (even after you restart emacs), I would suspect
a mixed installation (search the list for this).

Nick

Re: [O] Cannot build documentation (release_8.3beta-155-g82b64d)

2014-08-05 Thread Achim Gratz

Vicente Vera writes:
 Hello. Started another clean cloned local repository to try building
 the documentation again and the errors persist.

The error is quite likely on your side.  What is the output of

which makeinfo
file `which makeinfo`
makeinfo --version

as I suspect that you pick up some makeinfo along your PATH that
really is a wrapper script (or maybe a _really_ old version).


Regards,
Achim.
-- 
+[Q+ Matrix-12 WAVE#46+305 Neuron microQkb Andromeda XTk Blofeld]+

Samples for the Waldorf Blofeld:
http://Synth.Stromeko.net/Downloads.html#BlofeldSamplesExtra

Re: [O] Archive subtrees hierarchical (keep the parent structure)

2014-08-05 Thread Florian Adamsky

Dear Ken,

On Tuesday, Aug 05 2014, Ken Mankoff mank...@gmail.com wrote:

 You are correct that M-x org-archive-subtree-hierarchical works just
 fine. But I can't get it to work with the default keybinding as you show
 above.

 C-c C-x C-s is my (the?) default keybinding for archiving
 trees/subtrees.  Is this the correct keybinding?

according to the documentation the default keybinding to archive the
current entry is C-c C-x C-a. Could you try that instead?

[...]

Best
--
Florian Adamsky
http://florian.adamsky.it/

Re: [O] Archive subtrees hierarchical (keep the parent structure)

2014-08-05 Thread Ken Mankoff

Yes that works perfectly. Not sure why I had memorized a different
keystroke. Thank you!



On Tue, Aug 5, 2014 at 1:46 PM, Florian Adamsky fa-orgm...@haktar.org
wrote:

 Dear Ken,

 On Tuesday, Aug 05 2014, Ken Mankoff mank...@gmail.com wrote:

  You are correct that M-x org-archive-subtree-hierarchical works just
  fine. But I can't get it to work with the default keybinding as you show
  above.
 
  C-c C-x C-s is my (the?) default keybinding for archiving
  trees/subtrees.  Is this the correct keybinding?

 according to the documentation the default keybinding to archive the
 current entry is C-c C-x C-a. Could you try that instead?

 [...]

 Best
 --
 Florian Adamsky
 http://florian.adamsky.it/

Re: [O] R code block produces only partial output

2014-08-05 Thread Charles Berry

Eric Schulte schulte.eric at gmail.com writes:

 
 Andreas Kiermeier andreas.kiermeier at gmail.com writes:
 
  On 4 August 2014 21:23, Eric Schulte schulte.eric at gmail.com wrote:
  Why are you setting the output type to graphics when you are trying to

 
 Hi Andreas,
 
 I can't reproduce your problem.  I get the following from your minimal
 example when run in an Org-mode file, and from the command line.  They
 are identical.  Are you using the latest version of Org-mode?
 
 Best,
 Eric
 
[snip]
 
 [Previously saved workspace restored]
 
  x - rnorm(100)
  y - quantile(x, probs=seq(0,1,0.1))
  names(y) - 
as.character(c(0,.1,.2,.3,.4,.5,.6,.7,.8,.9,1))
  y
   0  .1  .2  .3  .4  .5 
 -2.53624773 -1.30846042 -0.70659822 -0.43565010 -0.24318346 -0.01034625 
  .6  .7  .8  .9   1 
  0.24125644  0.49945059  0.92032314  1.36423669  2.83357915 
 
 
 
 


Eric,

As noted by Andreas and John this is a problem for session output.

org-babel-R-evaluate-session uses 

 (string-match ^\\([ ]*[+\\.][ ]?\\)+\\([[0-9]+\\|[ ]\\) line)

to find the start of R output in the session.

This does not match the `  0', but matches the ` .6' 
in the output you show above, so if that had been in a session, all the 
output up to and including the '.' before the '6' would be clipped
by the following

  (substring line (match-end 1))


as Andreas output showed. 

Deleting the \\. fixes Andreas case, but what are the circumstances 
requiring the  \\. ?

HTH,

Chuck

Re: [O] R code block produces only partial output

2014-08-05 Thread Eric Schulte

Charles Berry ccbe...@ucsd.edu writes:

 Eric Schulte schulte.eric at gmail.com writes:

 
 Andreas Kiermeier andreas.kiermeier at gmail.com writes:
 
  On 4 August 2014 21:23, Eric Schulte schulte.eric at gmail.com wrote:
  Why are you setting the output type to graphics when you are trying to

 
 Hi Andreas,
 
 I can't reproduce your problem.  I get the following from your minimal
 example when run in an Org-mode file, and from the command line.  They
 are identical.  Are you using the latest version of Org-mode?
 
 Best,
 Eric
 
 [snip]
 
 [Previously saved workspace restored]
 
  x - rnorm(100)
  y - quantile(x, probs=seq(0,1,0.1))
  names(y) - 
 as.character(c(0,.1,.2,.3,.4,.5,.6,.7,.8,.9,1))
  y
   0  .1  .2  .3  .4  .5 
 -2.53624773 -1.30846042 -0.70659822 -0.43565010 -0.24318346 -0.01034625 
  .6  .7  .8  .9   1 
  0.24125644  0.49945059  0.92032314  1.36423669  2.83357915 
 
 
 
 


 Eric,

 As noted by Andreas and John this is a problem for session output.

 org-babel-R-evaluate-session uses 

  (string-match ^\\([ ]*[+\\.][ ]?\\)+\\([[0-9]+\\|[ ]\\) line)

 to find the start of R output in the session.

 This does not match the `  0', but matches the ` .6' 
 in the output you show above, so if that had been in a session, all the 
 output up to and including the '.' before the '6' would be clipped
 by the following

   (substring line (match-end 1))


 as Andreas output showed. 

 Deleting the \\. fixes Andreas case, but what are the circumstances 
 requiring the  \\. ?


I don't know.

The Babel R support needs a dedicated maintainer.  This was a role Dan
Davison originally filled.  I've partially filled in since, but as a
*very* light R user I'm not the best person.


 HTH,

 Chuck



-- 
Eric Schulte
https://cs.unm.edu/~eschulte
PGP: 0x614CA05D (see https://u.fsf.org/yw)

Re: [O] Repeat task a fixed number of times

2014-08-05 Thread Aric Gregson

Bastien b...@gnu.org writes:

 SabreWolfy sabrewo...@gmail.com writes:

 How do I indicate that the event should be repeated monthly for 6 months
 only? Time-shift?

 FWIW, this is a frequently requested feature and I will propose
 something other than cloning headlines for the next major Org version.

I entirely agree. Thus far I have been pulling my hair out getting diary
sexp statements to work. They do, but unless you understand how to write
them, it is time consuming searching the web for instructions.

Thanks, Aric

-- 
~O
/\_,
###-\  |_
(*) / (*)

Re: [O] R code block produces only partial output

2014-08-05 Thread John Hendy

On Tue, Aug 5, 2014 at 2:02 PM, Eric Schulte schulte.e...@gmail.com wrote:
 Charles Berry ccbe...@ucsd.edu writes:

 Eric Schulte schulte.eric at gmail.com writes:

[snip]

 Eric,

 As noted by Andreas and John this is a problem for session output.

 org-babel-R-evaluate-session uses

  (string-match ^\\([ ]*[+\\.][ ]?\\)+\\([[0-9]+\\|[ ]\\) line)

 to find the start of R output in the session.

 This does not match the `  0', but matches the ` .6'
 in the output you show above, so if that had been in a session, all the
 output up to and including the '.' before the '6' would be clipped
 by the following

   (substring line (match-end 1))


 as Andreas output showed.

 Deleting the \\. fixes Andreas case, but what are the circumstances
 requiring the  \\. ?


 I don't know.

I'm not sure either, but was curious if someone could translate the
regex into plain language. Maybe I could observe some typical
outputs and chime in since I use R regularly? From noob-level regex
stuff, it's looking for a new line followed by some number of spaces,
a  and at least one period and numbers?

If I'm recalling correctly, I also noticed that babel spit out the
output from loading the rms package on the first run with :session,
but I don't think it did it with non-session. I'll have to try that
again to be sure. Re-running the block removed the package load
message.


John


 The Babel R support needs a dedicated maintainer.  This was a role Dan
 Davison originally filled.  I've partially filled in since, but as a
 *very* light R user I'm not the best person.


 HTH,

 Chuck



 --
 Eric Schulte
 https://cs.unm.edu/~eschulte
 PGP: 0x614CA05D (see https://u.fsf.org/yw)

[O] Agenda, Deadline, DONE

2014-08-05 Thread hymie!

Greetings.  I'm new to OrgMode, and I'm still working my way through.  It
has a lot of the old functionality and features of the PalmPilot Bonsai
program, which I miss terribly, and I hope you take that as a compliment.

Anyway, I'm not sure if I'm doing something wrong or I just don't yet
understand the OrgMode way.

I have a TODO that looks like this (I had to pull out the details, of course):

** DONE task number 3
   SCHEDULED: 2014-07-30
   - State DONE   from TODO   [2014-07-30 Wed 14:47]
   DEADLINE: 2014-08-08

In my Agenda, I see this:

Friday  8 August 2014
  file:   Deadline:   DONE task number 3

It seems to me that, if the task is already completed, then I no longer care
about the deadline.  It's done.  So I'd rather not see it in the Agenda.

I guess I could just remove the deadline from the task itself, but I kinda
like having the historical info (that I finished a week and a half early).

Is there a way to remove deadlines for DONE tasks from the Agenda?

hymie!
hy...@lactose.homelinux.net

Re: [O] R code block produces only partial output

John Hendy jw.he...@gmail.com writes:

 On Tue, Aug 5, 2014 at 2:02 PM, Eric Schulte schulte.e...@gmail.com wrote:
 Charles Berry ccbe...@ucsd.edu writes:

 Eric Schulte schulte.eric at gmail.com writes:

 [snip]

 Eric,

 As noted by Andreas and John this is a problem for session output.

 org-babel-R-evaluate-session uses

  (string-match ^\\([ ]*[+\\.][ ]?\\)+\\([[0-9]+\\|[ ]\\) line)

 to find the start of R output in the session.

 This does not match the `  0', but matches the ` .6'
 in the output you show above, so if that had been in a session, all the
 output up to and including the '.' before the '6' would be clipped
 by the following

   (substring line (match-end 1))


 as Andreas output showed.

 Deleting the \\. fixes Andreas case, but what are the circumstances
 requiring the  \\. ?


 I don't know.

 I'm not sure either, but was curious if someone could translate the
 regex into plain language. Maybe I could observe some typical
 outputs and chime in since I use R regularly? From noob-level regex
 stuff, it's looking for a new line followed by some number of spaces,
 a  and at least one period and numbers?


It says[fn:1]

^  anchor the match at the beginning of the line

\\([ ]*[+\\.][ ]?\\)+ match any number of spaces followed by one of
   the three characters , + or . (a literal
   period) followed by 0 or 1 space. If there is
   a match, remember what is matched as group 1
   (that's what the escaped parentheses
   \\(...\\) do). Match one or more of these
   (that's what the + at the end does).

\\([[0-9]+\\|[ ]\\)match either an emtpy space or a sequence
   of one or more of the characters [ or 0-9
   i.e. an opening square bracket or a digit.
   remember what is matched as group 2.

The latter will match [0[1[2[3 e.g. which does not sound right.

The best way to find out what a regexp will match is to start with
a buffer containing example strings that you are trying to match
and example string that you are trying *not* to match, then invoke

M-x regexp-builder

and paste the regexp inside the empty set of quotes, then check the highligted
matches to see if they agree with your expectations.

Footnotes:

[fn:1] Crossing fingers and toes, hoping I've got it right...

-- 
Nick

Re: [O] R code block produces only partial output

Nick Dokos ndo...@gmail.com writes:

 John Hendy jw.he...@gmail.com writes:

 On Tue, Aug 5, 2014 at 2:02 PM, Eric Schulte schulte.e...@gmail.com wrote:
 Charles Berry ccbe...@ucsd.edu writes:

 Eric Schulte schulte.eric at gmail.com writes:

 [snip]

 Eric,

 As noted by Andreas and John this is a problem for session output.

 org-babel-R-evaluate-session uses

  (string-match ^\\([ ]*[+\\.][ ]?\\)+\\([[0-9]+\\|[ ]\\) line)

 to find the start of R output in the session.

 This does not match the `  0', but matches the ` .6'
 in the output you show above, so if that had been in a session, all the
 output up to and including the '.' before the '6' would be clipped
 by the following

   (substring line (match-end 1))


 as Andreas output showed.

 Deleting the \\. fixes Andreas case, but what are the circumstances
 requiring the  \\. ?


 I don't know.

 I'm not sure either, but was curious if someone could translate the
 regex into plain language. Maybe I could observe some typical
 outputs and chime in since I use R regularly? From noob-level regex
 stuff, it's looking for a new line followed by some number of spaces,
 a  and at least one period and numbers?


 It says[fn:1]

 ^  anchor the match at the beginning of the line

 \\([ ]*[+\\.][ ]?\\)+ match any number of spaces followed by one of
the three characters , + or . (a literal
period) followed by 0 or 1 space. If there is
a match, remember what is matched as group 1
(that's what the escaped parentheses
\\(...\\) do). Match one or more of these
(that's what the + at the end does).

 \\([[0-9]+\\|[ ]\\)match either an emtpy space or a sequence
of one or more of the characters [ or 0-9
i.e. an opening square bracket or a digit.
remember what is matched as group 2.

 The latter will match [0[1[2[3 e.g. which does not sound right.

 The best way to find out what a regexp will match is to start with
 a buffer containing example strings that you are trying to match
 and example string that you are trying *not* to match, then invoke

 M-x regexp-builder

 and paste the regexp inside the empty set of quotes, then check the highligted
 matches to see if they agree with your expectations.

 Footnotes:

 [fn:1] Crossing fingers and toes, hoping I've got it right...

Bah, got it wrong: backslash is not special within a character class, so

[+\\.]

matches  or + or \ or . (a period - which is also not special in a
character class).

I'm not sure what the regexp is supposed to match, but I'm almost sure
that it is wrong :-)

-- 
Nick

Re: [O] Agenda, Deadline, DONE

2014-08-05 Thread Jorge A. Alfaro-Murillo


hymie! hy...@lactose.homelinux.net writes:

Greetings.  I'm new to OrgMode, and I'm still working my way 
through.  It has a lot of the old functionality and features of 
the PalmPilot Bonsai program, which I miss terribly, and I 
hope you take that as a compliment. 


Welcome.

I have a TODO that looks like this (I had to pull out the 
details, of course): 

** DONE task number 3 
   SCHEDULED: 2014-07-30 - State DONE   from TODO 
   [2014-07-30 Wed 14:47] DEADLINE: 2014-08-08 

In my Agenda, I see this: 

Friday  8 August 2014 
  file:   Deadline:   DONE task number 3 

It seems to me that, if the task is already completed, then I no 
longer care about the deadline. It's done. So I'd rather not see 
it in the Agenda. 

I guess I could just remove the deadline from the task itself, 
but I kinda like having the historical info (that I finished a 
week and a half early).


Is there a way to remove deadlines for DONE tasks from the 
Agenda? 


I also like to keep the historical info, but in order to keep my 
tasks.org file clean (and save some time while building the 
agenda) I keep it in a separate file. Probably the simplest way is 
something like this:


#+BEGIN_SRC emacs-lisp 
 (setq org-archive-location ~/org/archive.org::) 
#+END_SRC  Now when you do not want to see something anymore, you 
can press C-c C-x C-a from the org file or the agenda to move the 
item to the archive.org file. Check the documentation of 
org-archive-location or (info (org) Archiving) for more details.


Best,

--
Jorge.

Re: [O] Agenda, Deadline, DONE

2014-08-05 Thread SabreWolfy

hymie! hymie at lactose.homelinux.net writes:

 Is there a way to remove deadlines for DONE tasks from the Agenda?

Add this to your .emacs:

,-
| (setq org-agenda-skip-deadline-if-done nil)
`-

Re: [O] Agenda, Deadline, DONE

2014-08-05 Thread SabreWolfy

Correction:

,-
| (setq org-agenda-skip-deadline-if-done t)
`-

Re: [O] Agenda, Deadline, DONE

2014-08-05 Thread hymie!

In our last episode, the evil Dr. Lacto had captured our hero,
  SabreWolfy sabrewo...@gmail.com, who said:
 (setq org-agenda-skip-deadline-if-done t)

Perfect!  Thanks!

--hymie!http://lactose.homelinux.net/~hymiehy...@lactose.homelinux.net

Re: [O] org-ref in action

2014-08-05 Thread John Kitchin

Hi, it got moved in a re-organization to
https://github.com/jkitchin/jmax/blob/master/org/org-ref.org.

Sorry for the inconvenience!

Xebar Saram zelt...@gmail.com writes:

 Hi all

 the github link seems dead, anyone knows where one could get and try
 org-ref from?

 z

 On Mon, Jun 30, 2014 at 2:27 PM, Joseph Vidal-Rosset
 joseph.vidal.ros...@gmail.com wrote:

 Thanks Eric, it works now, with the latest version of org-mode. 
 
 Best wishes
 
 Jo. 
 
 
 
 
 2014-06-30 12:22 GMT+02:00 Eric Schulte schulte.e...@gmail.com:
 
 
 
  Thanns to the default cite action, I get for example in my
 org file:
 
  [[cite:(119–136)johansson36:_minim_formal]]
 
  and it creates no reference at al, because via the export I
 get:
 
  \cite{(119–136)johansson36:_minim_formal}
 
 
 
 Using the latest version of Org-mode from the git repository,
 this is a
 very new feature and requires usage of the git version of
 Org-mode, I am
 seeing the desired behavior. After simply requiring ox-bibtex,
 the
 following
 
 * H1
 [[cite:(119–136)johansson36:_minim_formal]]
 
 exports to
 
 \begin{document}
 
 \maketitle
 \tableofcontents
 
 \section{H1}
 \label{sec-1}~\cite[119–136]{johansson36:_minim_formal}
 % Emacs 24.4.50.2 (Org mode beta_8.3)
 \end{document}
 
 As expected.
 
 I hope this helps,
 Eric
 
 
 
 --
 Eric Schulte
 https://cs.unm.edu/~eschulte
 PGP: 0x614CA05D (see https://u.fsf.org/yw)
 

 



-- 
---
John Kitchin
Professor
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
http://kitchingroup.cheme.cmu.edu

[O] How to change color of (part of) agenda header

Hello,

I'm trying to get part of the agenda header in another color, here
TODAY:

--8---cut here---start-8---
  (add-to-list 'org-agenda-custom-commands
   `(f Today
 (;; list of all TODO entries with deadline today
  (tags-todo DEADLINE=\+0d\
 ((org-agenda-overriding-header
   (concat DUE  #(TODAY 0 4 (face (:foreground 
red)
  (org-agenda-skip-function
   '(org-agenda-skip-entry-if 'notdeadline)
 ((org-agenda-format-date ))) t)
--8---cut here---end---8---

The goal is to make what's unique and different from the next agenda
blocks very outstanding.

Though, it does not work: text is simply copied, as if text properties
did not exist.

Am I missing something, or writing it in a buggy way?

Best regards,
  Seb

PS- I tried strings with `propertize' as well, with no more success.

-- 
Sebastien Vauban

[O] [PATCH] org.el: make org-paragraph-fill ignore \[...\] regions starting and ending a line

2014-08-05 Thread Federico Beffa

 The current proposal is to make them elements instead of objects in Org
 syntax (i.e, a `latex-environment' instead of a `latex-fragment'). In
 a nutshell:

  - Pros:
+ conform to LaTeX intent,
+ impossible to fill.
  - Cons:
- documents containing \[...\] mid-line will be broken (such
  constructs will not be recognized anymore).

...

 If this is always the case for you, you can fix this behavior by
 always putting it in a new paragraph and using a filter.

OK, I understand that the Cons above is a serious issue and nobody wants it.
For this reason I went back to my original idea and modified the
`org-fill-paragraph' function. This provides the two Pros above
without having to introduce the undesired Cons. The behavior is a
follows:
- if \[...\] is inline, behave as before.
- if \[ is the first non space character of a line and the closing \]
is the last non space character of a line (possibly spanning several
lines), then do not fill this region of the paragraph.

Attached you find a patch with the proposed modification. I would
greatly appreciate if you could consider it for inclusion in org-mode
and provide feedback.

I understand that if you are willing to make use of this patch, I will
have to sign a copyright assignment form. This is not a problem, but
please do not make me waste time with forms if you do not want to
include the patch in org-mode. Please provide instructions on how to
proceed.

Regards,
Federico.


0001-org.el-make-org-paragraph-fill-ignore-.-regions-star.patch
Description: Binary data

Re: [O] How to change color of (part of) agenda header

Sebastien Vauban sva-n...@mygooglest.com
writes:

 Hello,

 I'm trying to get part of the agenda header in another color, here
 TODAY:

   (add-to-list 'org-agenda-custom-commands
`(f Today
  (;; list of all TODO entries with deadline today
   (tags-todo DEADLINE=\+0d\
  ((org-agenda-overriding-header
(concat DUE  #(TODAY 0 4 (face 
 (:foreground red)
   (org-agenda-skip-function
'(org-agenda-skip-entry-if 'notdeadline)
  ((org-agenda-format-date ))) t)

 The goal is to make what's unique and different from the next agenda
 blocks very outstanding.

 Though, it does not work: text is simply copied, as if text properties
 did not exist.

 Am I missing something, or writing it in a buggy way?


The limits should be 0 and 5 to get the whole word, but that's not the
problem here: if you do C-c a f to display the agenda and then do C-u
C-x = on (say) the T of Today, you will see that the face is
org-agenda-structure. Doing a grep for that in the org lisp directory
will quickly lead you to this:

,
| (if org-agenda-overriding-header
| (insert (org-add-props (copy-sequence 
org-agenda-overriding-header)
| nil 'face 'org-agenda-structure) \n)
`

so it doesn't matter what face property the header had to begin with:
what is inserted into the buffer is given a different face property.

-- 
Nick

Re: [O] R code block produces only partial output

2014-08-05 Thread Charles C. Berry


On Tue, 5 Aug 2014, John Hendy wrote:


On Tue, Aug 5, 2014 at 2:02 PM, Eric Schulte schulte.e...@gmail.com wrote:

Charles Berry ccbe...@ucsd.edu writes:


Eric Schulte schulte.eric at gmail.com writes:


[snip]


Eric,

As noted by Andreas and John this is a problem for session output.

org-babel-R-evaluate-session uses

 (string-match ^\\([ ]*[+\\.][ ]?\\)+\\([[0-9]+\\|[ ]\\) line)

to find the start of R output in the session.

This does not match the `  0', but matches the ` .6'
in the output you show above, so if that had been in a session, all the
output up to and including the '.' before the '6' would be clipped
by the following

  (substring line (match-end 1))


as Andreas output showed.

Deleting the \\. fixes Andreas case, but what are the circumstances
requiring the  \\. ?



I don't know.


I'm not sure either, but was curious if someone could translate the
regex into plain language. Maybe I could observe some typical
outputs and chime in since I use R regularly? From noob-level regex
stuff, it's looking for a new line followed by some number of spaces,
a  and at least one period and numbers?




One of  or + or . and then some more.

You can get the 'English' at

http://www.myezapp.com/apps/dev/regexp/show.ws


But a better approach IMO is to open an R transcript, then M-x 
regex-builder and paste that regex into the window in place of the . The 
matches should highlight.


Or use M-x occur (and edit the string to rid quotes and extra 
backslashes). But that will not show what you are missing.


Chuck

Re: [O] Cannot build documentation (release_8.3beta-155-g82b64d)

2014-08-05 Thread Vicente Vera

Yes, i had an old makeinfo (4.13) that lives in the debian wheezy
repository. Just now got the latest version and it worked. Didn't thought
about this since some commits ago the documentation was built just fine
with makeinfo 4.13.

Thank you very much Nick  Achim.


2014-08-05 12:33 GMT-04:00 Vicente Vera vicente...@gmail.com:

 Hello. Started another clean cloned local repository to try building the
 documentation again and the errors persist.
 'M-x org-version' gives: Org-mode version 8.3beta
 (release_8.3beta-167-g003edd @ /usr/local/share/emacs/site-lisp/org/). I
 installed everything except documentation.
 Here's the output of 'make doc':

 make -C doc info
 make[1]: Entering directory
 `/home/vicente/descarga/org-master-git-20140804/org-mode/doc'
 makeinfo --no-split org.texi -o org
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:16382:
 Cross reference to nonexistent node `Using

  multiple #+TBLFM lines' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:16073:
 Cross reference to nonexistent node `External
  links' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:15543:
 Cross reference to nonexistent node `Code evaluation
  security' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:15284:
 Cross reference to nonexistent node `Property
  inheritance' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:14501:
 Cross reference to nonexistent node `Evaluating code
  blocks' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:14219:
 Cross reference to nonexistent node `Evaluating

  code blocks' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:14214:
 Cross reference to nonexistent node `Code

  evaluation security' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:14164:
 Cross reference to nonexistent node `Library

  of Babel' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:13386:
 Cross reference to nonexistent node `HTML
  export' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:12927:
 Cross reference to nonexistent node `Evaluating

  code blocks' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:12214:
 Cross reference to nonexistent node `Column width and
  alignment' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:12095:
 Cross reference to nonexistent node `Configuring a

  document converter' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:11247:
 Cross reference to nonexistent node `Radio
  targets' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:10783:
 Cross reference to nonexistent node `Export
  settings' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:10499:
 Cross reference to nonexistent node `In-buffer
  settings' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:10344:
 Cross reference to nonexistent node `Literal
  examples' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:10173:
 Cross reference to nonexistent node `Math formatting in

  HTML export' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:10013:
 Cross reference to nonexistent node `Generating

  an index' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:9918:
 Cross reference to nonexistent node `Text

  areas in HTML export' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:9846:
 Cross reference to nonexistent node `Plain
  lists' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:9609:
 Cross reference to nonexistent node `Document
  structure' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:8779:
 Cross reference to nonexistent node `Filtering/limiting

  agenda items' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:8134:
 Cross reference to nonexistent node `Property
  inheritance' (perhaps incorrect sectioning?).
 /home/vicente/descarga/org-master-git-20140804/org-mode/doc//org.texi:8012:
 Cross reference to nonexistent node `Agenda
  commands' (perhaps incorrect sectioning?).

[O] Org equivalent to \chapter*

2014-08-05 Thread Alan L Tyree

I'm sure this has been asked before, but I can't seem to find it. Is 
there an org markup that produces a starred latex heading?


In a book, for example, I want the Preface to be at chapter level, but 
not included in the numbering. Same for HTML export, of course.


Thanks for any pointers,
Alan

--
Alan L Tyreehttp://www2.austlii.edu.au/~alan
Tel:  04 2748 6206  sip:typh...@iptel.org

Re: [O] Org equivalent to \chapter*

Alan L Tyree alanty...@gmail.com writes:

 I'm sure this has been asked before, but I can't seem to find it. Is
 there an org markup that produces a starred latex heading?

 In a book, for example, I want the Preface to be at chapter level, but
 not included in the numbering. Same for HTML export, of course.

,[ C-h v org-latex-classes RET ]
| org-latex-classes is a variable defined in `ox-latex.el'.
| Its value is shown below.
| 
| Documentation:
| Alist of LaTeX classes and associated header and structure.
| If #+LATEX_CLASS is set in the buffer, use its value and the
| associated information.  Here is the structure of each cell:
| 
|   (class-name
| header-string
| (numbered-section . unnumbered-section)
| ...)
| 
| The header string
| -
| 
| The HEADER-STRING is the header that will be inserted into the
| LaTeX file.  It should contain the \documentclass macro, and
| anything else that is needed for this setup.  To this header, the
| following commands will be added:
| 
| - Calls to \usepackage for all packages mentioned in the
|   variables `org-latex-default-packages-alist' and
|   `org-latex-packages-alist'.  Thus, your header definitions
|   should avoid to also request these packages.
| 
| - Lines specified via #+LATEX_HEADER: and
|   #+LATEX_HEADER_EXTRA: keywords.
| 
| If you need more control about the sequence in which the header
| is built up, or if you want to exclude one of these building
| blocks for a particular class, you can use the following
| macro-like placeholders.
| 
|  [DEFAULT-PACKAGES]  \usepackage statements for default packages
|  [NO-DEFAULT-PACKAGES]   do not include any of the default packages
|  [PACKAGES]  \usepackage statements for packages
|  [NO-PACKAGES]   do not include the packages
|  [EXTRA] the stuff from #+LATEX_HEADER(_EXTRA)
|  [NO-EXTRA]  do not include #+LATEX_HEADER(_EXTRA) stuff
| 
| So a header like
| 
|   \documentclass{article}
|   [NO-DEFAULT-PACKAGES]
|   [EXTRA]
|   \providecommand{\alert}[1]{\textbf{#1}}
|   [PACKAGES]
| 
| will omit the default packages, and will include the
| #+LATEX_HEADER and #+LATEX_HEADER_EXTRA lines, then have a call
| to \providecommand, and then place \usepackage commands based
| on the content of `org-latex-packages-alist'.
| 
| If your header, `org-latex-default-packages-alist' or
| `org-latex-packages-alist' inserts \usepackage[AUTO]{inputenc},
| AUTO will automatically be replaced with a coding system derived
| from `buffer-file-coding-system'.  See also the variable
| `org-latex-inputenc-alist' for a way to influence this mechanism.
| 
| Likewise, if your header contains \usepackage[AUTO]{babel},
| AUTO will be replaced with the language related to the language
| code specified by `org-export-default-language', which see.  Note
| that constructions such as \usepackage[french,AUTO,english]{babel}
| are permitted.
| 
| The sectioning structure
| 
| 
| The sectioning structure of the class is given by the elements
| following the header string.  For each sectioning level, a number
| of strings is specified.  A %s formatter is mandatory in each
| section string and will be replaced by the title of the section.
| 
| Instead of a cons cell (numbered . unnumbered), you can also
| provide a list of 2 or 4 elements,
| 
|   (numbered-open numbered-close)
| 
| or
| 
|   (numbered-open numbered-close unnumbered-open unnumbered-close)
| 
| providing opening and closing strings for a LaTeX environment
| that should represent the document section.  The opening clause
| should have a %s to represent the section title.
| 
| Instead of a list of sectioning commands, you can also specify
| a function name.  That function will be called with two
| parameters, the (reduced) level of the headline, and a predicate
| non-nil when the headline should be numbered.  It must return
| a format string in which the section title will be added.
| 
| You can customize this variable.
| 
| Value: ((koma-book \\documentclass{scrbook}
|   (\\part{%s} . \\part*{%s})
|   (\\chapter{%s} . \\chapter*{%s})
|   (\\section{%s} . \\section*{%s})
|   (\\subsection{%s} . \\subsection*{%s})
|   (\\subsubsection{%s} . \\subsubsection*{%s})
|   (\\paragraph{%s} . \\paragraph*{%s})
|   (\\subparagraph{%s} . \\subparagraph*{%s}))
|  (koma-article \\documentclass{scrartcl}
|   (\\section{%s} . \\section*{%s})
|   (\\subsection{%s} . \\subsection*{%s})
|   (\\subsubsection{%s} . \\subsubsection*{%s})
|   (\\paragraph{%s} . \\paragraph*{%s})
|   (\\subparagraph{%s} . \\subparagraph*{%s}))
|  (article \\documentclass[11pt]{article}
|   (\\section{%s} . \\section*{%s})
|   (\\subsection{%s} . \\subsection*{%s})
|   (\\subsubsection{%s} . \\subsubsection*{%s})
|   (\\paragraph{%s} . \\paragraph*{%s})
|   (\\subparagraph{%s} . \\subparagraph*{%s}))
|  (report \\documentclass[11pt]{report}
|   (\\part{%s} . \\part*{%s})
|   (\\chapter{%s} . \\chapter*{%s})
|

Re: [O] R code block produces only partial output

2014-08-05 Thread Andreas Kiermeier


On 6 August 2014 03:35, Charles Berry ccbe...@ucsd.edu wrote:
[snip]

 org-babel-R-evaluate-session uses

  (string-match ^\\([ ]*[+\\.][ ]?\\)+\\([[0-9]+\\|[ ]\\) line)

 to find the start of R output in the session.

 This does not match the `  0', but matches the ` .6'
 in the output you show above, so if that had been in a session, all the
 output up to and including the '.' before the '6' would be clipped
 by the following

   (substring line (match-end 1))


 as Andreas output showed.

 Deleting the \\. fixes Andreas case, but what are the circumstances
 requiring the  \\. ?




Thanks Charles for finding this.

I do use R quite a bit, and I can only think of 
 
 (at beginning of the line) as the command prompt, along with +
 
 (at beginning of the line) as a continuation prompt for multi-line
commands. I don't know what
  
\ or
 
. provide
 (I don't think this has changed over the various R versions)

.

A 
complication might be that the user can change the command prompt (and
continuation prompt) to something else they like (
 see here: 
http://cran.r-project.org/doc/manuals/r-release/R-intro.html#Customizing-the-environment
 ).

For the time being I've taken the \\. out of my local version of ob-R.el
(then byte compiled and loaded) and it seems to work fine.

Maybe this is a question for the ESS developers who use R extensively and
probably might be able to provide some more definitive guidance on this
than I can?

Thanks,

Andreas

Re: [O] [BUG] src_blocks - :results raw and replace don't work together

Eric Schulte schulte.e...@gmail.com writes:

 In general checking the manual before posting to the ML is a good idea.

You (voluntarily) write a meaningless one-liner and then complain I
wasted 10sec of you lifetime by not ReadingTFM - come on ...

-- 
cheers,
Thorsten

Re: [O] R code block produces only partial output

2014-08-05 Thread Charles C. Berry


On Tue, 5 Aug 2014, Andreas Kiermeier wrote:



On 6 August 2014 03:35, Charles Berry ccbe...@ucsd.edu wrote:
[snip]


org-babel-R-evaluate-session uses

 (string-match ^\\([ ]*[+\\.][ ]?\\)+\\([[0-9]+\\|[ ]\\) line)

to find the start of R output in the session.


[snip]



Thanks Charles for finding this.

I do use R quite a bit, and I can only think of 
 
 (at beginning of the line) as the command prompt, along with +
 
 (at beginning of the line) as a continuation prompt for multi-line
commands. I don't know what
 
\ or
 
. provide
 (I don't think this has changed over the various R versions)

.

A 
complication might be that the user can change the command prompt (and
continuation prompt) to something else they like (
see here: 
http://cran.r-project.org/doc/manuals/r-release/R-intro.html#Customizing-the-environment
).

For the time being I've taken the \\. out of my local version of ob-R.el
(then byte compiled and loaded) and it seems to work fine.

Maybe this is a question for the ESS developers who use R extensively and
probably might be able to provide some more definitive guidance on this
than I can?



Here is the docstring from ESS's inferior-S-prompt:

inferior-S-prompt is a variable defined in `ess-custom.el'.
Its value is []a-zA-Z0-9.[]*\\([+.] \\)* 

Documentation:
Regexp used in S and R inferior and transcript buffers for prompt 
navigation.

Customise it to make `comint-previous-prompt' quiqly navigate to
interesting portions of the buffer.


You can customize this variable.



Note that there is a space *required* after the [+.], but the hard coded 
regex in `org-babel-R-evaluate-session' lets the space be optional.


I am guessing the a-zA-Z stuff is there to strip 'Browse[1] ' prompts and 
such, which probably isn't an issue for babel.


Just before the defcustom for inferior-S-prompt, I see this comment
in ess-custom.el:

;; need to recognise  + + +   
;; and + . +  in tracebug prompt

Ha! The '.' seems to be for ess-tracebug. I am guessing that nobody will 
need to output tracebug sessions from babel. So maybe it is safe to delete 
the . after all - or at least require the space after it.


Maybe the regex should be put in a defcustom.

p.s. There is also `inferior-ess-prompt' which on my system is the same as 
inferior-S-prompt (in an R buffer - its buffer local)




HTH,

Chuck

Re: [O] Org equivalent to \chapter*

Thorsten Jolitz tjol...@gmail.com writes:

 Alan L Tyree alanty...@gmail.com writes:

 I'm sure this has been asked before, but I can't seem to find it. Is
 there an org markup that produces a starred latex heading?

 In a book, for example, I want the Preface to be at chapter level, but
 not included in the numbering. Same for HTML export, of course.

 ,[ C-h v org-latex-classes RET ]
 | org-latex-classes is a variable defined in `ox-latex.el'.
 | Its value is shown below.
 | ...
 `

How does org-latex-classes help with the OP's question?

AFAIK, org-latex-classes works together with :section-numbers
(org-export-with-section-numbers or #+OPTIONS: num: t|nil|N) to allow
the first N [fn:1] levels of headlines to be numbered while lower levels
are unnumbered. It does not allow selectively turning on/off numbers for
a given level: they are either all on or all off.

And it cannot possibly affect HTML export.

To the best of my knowledge, the answer to the OP's question is that it
cannot be done from org: you have to tweak the export output.

Footnotes:

[fn:1] If set to t, then N is set from the value of org-export-headline-levels
   (3 by default).

-- 
Nick

Re: [O] publishing to gihub gh-pages branch

2014-08-05 Thread Rafael

Bastien b...@gnu.org writes:

 regcl re...@channing.harvard.edu writes:

 Thanks, but I guess I didn't find the solutions you have
 mentioned. Could you please point them out?

 I'm thinking of this for example:
 http://orgmode.org/worg/org-tutorials/org-jekyll.html

 This is not a complete solution for the problem at hand,
 but a start for looking further.

I'm just reading this, maybe this Python tool:

https://github.com/davisp/ghp-import

could be useful to the OP.

Re: [O] R code block produces only partial output

Hi Chuck,

2014ko abuztuak 5an, Charles C. Berry-ek idatzi zuen:

[...]

Here is the docstring from ESS's inferior-S-prompt:

inferior-S-prompt is a variable defined in `ess-custom.el'.
Its value is []a-zA-Z0-9.[]*\\([+.] \\)*

Documentation:
Regexp used in S and R inferior and transcript buffers for prompt
navigation.
Customise it to make `comint-previous-prompt' quiqly navigate to
interesting portions of the buffer.

You can customize this variable.

Note that there is a space *required* after the [+.], but the hard coded
regex in `org-babel-R-evaluate-session' lets the space be optional.

I am guessing the a-zA-Z stuff is there to strip 'Browse[1] ' prompts and
such, which probably isn't an issue for babel.

Why doesn’t org just use the value of inferior-S-prompt? (which would
then need to have the bit concatenated to the end that matches
e.g. [1]). Another way of putting this might be “does the space that
ESS requires ever turn up missing?”

Just before the defcustom for inferior-S-prompt, I see this comment
in ess-custom.el:

;; need to recognise + + +
;; and + . + in tracebug prompt

Ha! The '.' seems to be for ess-tracebug. I am guessing that nobody will
need to output tracebug sessions from babel. So maybe it is safe to delete
the . after all - or at least require the space after it.

Tracebug is on by default in ESS – C-h v ess-use-tracebug. Tracebug
even has babel support: see e.g. line 148 in ess.tracebug.el
https://github.com/emacs-ess/ESS/blob/4283f1304a54502c42707b6a4ba347703f0992dd/lisp/ess-tracebug.el#L148.

Maybe the regex should be put in a defcustom.

Why? The current mismatch between babel and ESS seems like a bug, but
once that’s fixed I don’t see the use case for configurability here.
(But maybe you have something in mind...)

--
Aaron Ecay

Re: [O] R code block produces only partial output

Hi Eric,

2014ko abuztuak 5an, Eric Schulte-ek idatzi zuen:
 

[...]

 I don't know.
 
 The Babel R support needs a dedicated maintainer.  This was a role Dan
 Davison originally filled.  I've partially filled in since, but as a
 *very* light R user I'm not the best person.

I use babel’s R support (almost) every day for my work, and I know
enough elisp to be getting along.  I’ve not had tons of time for
org/emacs development lately, but I think I can make enough time to
maintain ob-R.el.

There are others who could probably do just as good (if not indeed
better) a job.  Rainer’s name springs to mind as someone who has
submitted several patches for ob-R lately, but there are probably
others who I’m not calling to mind immediately.  I’d be happy to
share with other willing volunteers, either as a joint maintainership
or (perhaps preferably) alternating the position in a 3- to 6-month
rota.

-- 
Aaron Ecay

Re: [O] (Maybe) enhance `org-element-src-block-interpreter'?

Hi Thorsten,

2014ko abuztuak 5an, Thorsten Jolitz-ek idatzi zuen:

[...]

 
 Parse this src-block (with point at beg of block):
 
 ,
 | M-: (setq ptree (org-element-at-point))
 `
 
 #+header: :results raw
 #+begin_src emacs-lisp
 (message hello world)
 #+end_src
 
 #+results:
 hello world
 
 Then evaluate
 
 #+begin_src emacs-lisp
 (org-element-src-block-interpreter ptree nil)
 #+end_src
 
 #+results:
 : #+BEGIN_SRC emacs-lisp
 :   (message hello world)
 : #+END_SRC
 
 #+begin_src emacs-lisp
 (tj/src-block-interpreter ptree nil)
 #+end_src
 
 #+results:
 : #+HEADER: :results raw
 : #+BEGIN_SRC emacs-lisp
 :   (message hello world)
 : #+END_SRC

Indeed this seems like an improvement on the status quo.  But other
elements of org syntax (not just src blocks) can have a valid #+header
(and indeed other affiliated keywords, like #+attr_latex), so the fix
probably should be more general.

-- 
Aaron Ecay

Re: [O] [FR] fill caption

Hi Bastien,

2014ko uztailak 27an, Bastien-ek idatzi zuen:
 
 Hi Aaron,
 
 Aaron Ecay aarone...@gmail.com writes:
 
 There’s a warning in the Org manual about using filladapt with org, but
 I’ve never noticed any problems.
 
 Interesting -- was it always like this?  Or is it due to the recent
 improvements Nicolas made to the filling mechanisms?  If the manual
 needs to remove the warning, let's do so.

This warning was introduced on Sep 21 2012 in commit 6cb676f6.  AFAIK,
that predates Nicolas’s work.  I will let you make the decision about
whether the warning should be removed.

-- 
Aaron Ecay

Re: [O] proposal to have ignoreheading tags/properties

Hi Mark,

2014ko abuztuak 2an, Mark Edgington-ek idatzi zuen:
 
 Hi Bastien,
 
 I've attached a patch for ox-extra which doesn't yet include the
 option for choosing specific tag names (the 'ignore' tag is currently
 hard-coded).  Feel free to modify / commit it.
 
 Regards,
 
 Mark

Thanks for the patch.  It is committed (with light modifications).

-- 
Aaron Ecay

Re: [O] #+header: :post - Symbol's value as variable is void: this

Hi Thorsten,

2014ko uztailak 27an, Thorsten Jolitz-ek idatzi zuen:
 
 Thorsten Jolitz tjol...@gmail.com writes:
 
 Hi List, 
 
 whats wrong with this :post header arg:
 
 #+header: :post (format #+attr_latex :float :placement {c}{scale=.6}\n%s 
 *this*) 
 #+begin_src emacs-lisp 
 (+ 2 2)
 #+end_src
 
 When I understand 
 
 ,
 | http://orgmode.org/manual/post.html
 `
 
 correctly, *this* should hold the block results, but I get 
 
 ,
 | Symbol's value as variable is void: *this*
 `
 
 
 This works:
 
 #+name: myconcat
 #+header: :var x=
 #+begin_src emacs-lisp
  (format Do %sx then quit x)
 #+end_src
 
 
 #+header: :post myconcat(x=*this*)
 #+begin_src emacs-lisp 
  (+ 2 2)
 #+end_src
 
 #+results:
 : Do 4x then quit
 
 
 but how do I interpret the following sentence from the manual:
 
 ,
 | This variable [*this*] may then be included in header argument forms
 | such as those used in var header argument specifications allowing
 | passing of results to other code blocks, or direct execution via Emacs
 | Lisp.
 `
 
 What is meant by 'direct execution via Emacs Lisp' here? I think the
 above construct with two src-blocks is a bit heavy for the rather small
 task and hoped I could just give an Emacs Lisp expression containing
 *this* as value to the :post header arg, but apparently not?
 
 #+header: :post (format Do %sx then quit *this*)
 #+begin_src emacs-lisp 
  (+ 2 2)
 #+end_src
 
 - eval: Symbol's value as variable is void: *this*

The value of :post should be a babel call (in the same format as e.g. a
#+call line), not an elisp form.  If babel sees something that looks
like elisp, it will attempt to ‘eval’ it when parsing the src block,
before *this* is bound (which happens only upon execution, after
parsing).

-- 
Aaron Ecay

Re: [O] [BUG] :header-args+: