Re: [O] requesting help debugging tangle on windows

2012-02-20 Thread Andrew Cheng
#1 worked. My assumption about how I could get the latest org was wrong.
Thanks very much for the help!

On Sat, Feb 18, 2012 at 10:16 AM, Eric Schulte  wrote:

> Unfortunately I don't have access to a windows machine for testing of
> tangle behavior.  Before we delve deeper, could you confirm two things.
>
> 1. It sounds as though you are not using the latest version of Org-mode
>   from git.  Please upgrade to the latest -- which should also get you
>   the latest ob-clojure.el so you don't have to evaluate the snippet
>   posted below.  There are instructions for keeping current with org
>   development at http://orgmode.org/worg/org-faq.html#Keeping-current.
>
> 2. Try to reproduce the problem using "emacs -Q" which will launch emacs
>   without any personal configuration.  That way we can see if this
>   windows issue is someone related to your config, or is general.
>
> Thanks,
>
> Andrew Cheng  writes:
>
> > Tangle works in my linux environment but doesn't quite work in my windows
> > environment. Here's my org file. It defines a code snippet named "block"
> > and then has a tangle section that refers to "block". Tangle results in a
> > file with two blank lines in my windows environment.
> >
> > #+name: block
> > #+begin_src clojure :results silent
> > (+ 2 3)
> > #+end_src
> >
> > #+begin_src clojure :tangle ../src/tmp.clj :results silent :exports none
> > :noweb yes
> > <>
> > #+end_src
> >
> > But --- If my tangle section has regular code in it instead of referring
> to
> > other named <> then the resulting file after tangle has the code
> > you'd expect.
> >
> > Below is my org setup. The *Messages* buffer doesn't contain any
> > interesting error messages. What can I do to find out what's going on?
> >
> > I did evaluate the following snippet to get C-c C-c to properly evaluate
> a
> > clojure code block successfully on my machine. It didn't affect the issue
> > of tangling. Just thought I'd mention it to be thorough. The snippet is
> > from Eric Schulte. I thought that by deleting my elpa org folder and
> > starting emacs again I'd get the latest (with his fix) but I discovered
> > that I still needed to run this snippet to get C-c C-c to work.
> >
> > Thanks in advance for any help!
> >
> > (defun org-babel-execute:clojure (body params)
> >  "Execute a block of Clojure code with Babel."
> >  (require 'slime)
> >  (with-temp-buffer
> >(insert (org-babel-expand-body:clojure body params))
> >((lambda (result)
> >   (let ((result-params (cdr (assoc :result-params params
> > (if (or (member "scalar" result-params)
> > (member "verbatim" result-params))
> > result
> >   (condition-case nil (org-babel-script-escape result)
> > (error result)
> > (slime-eval
> >  `(swank:eval-and-grab-output
> >,(buffer-substring-no-properties (point-min) (point-max)))
> >  (cdr (assoc :package params))
> >
> > Emacs  : GNU Emacs 24.0.50.1 (i386-mingw-nt5.1.2600)
> >  of 2011-09-03 on SHAN-PC
> > Package: Org-mode version 7.7
> >
> > current state:
> > ==
> > (setq
> >  org-export-blocks '((src org-babel-exp-src-block nil) (comment
> > org-export-blocks-format-comment t)
> >  (ditaa org-export-blocks-format-ditaa nil) (dot
> > org-export-blocks-format-dot nil))
> >  org-ctrl-c-ctrl-c-hook '(org-babel-hash-at-point
> > org-babel-execute-safely-maybe)
> >  org-export-preprocess-before-selecting-backend-code-hook
> > '(org-beamer-select-beamer-code)
> >  org-tab-first-hook '(org-hide-block-toggle-maybe
> > org-src-native-tab-command-maybe
> >   org-babel-hide-result-toggle-maybe)
> >  org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers
> > org-cycle-show-empty-lines
> >   org-optimize-window-after-visibility-change)
> >  org-agenda-before-write-hook '(org-agenda-add-entry-text)
> >  org-speed-command-hook '(org-speed-command-default-hook
> > org-babel-speed-command-hook)
> >  org-babel-pre-tangle-hook '(save-buffer)
> >  org-occur-hook '(org-first-headline-recenter)
> >  org-export-interblocks '((lob org-babel-exp-lob-one-liners) (src
> > org-babel-exp-inline-src-blocks))
> >  org-metaup-hook '(org-babel-load-in-session-maybe)
> >  org-

Re: [O] requesting help debugging tangle on windows

2012-02-15 Thread Andrew Cheng
Reproduced the issue with a clean Emacs 24 on Windows with and without my
.emacs and .emacs.d on the same machine and on a different machine.

Is this message related? Could not read org-id-values from
~\.emacs.d\.org-id-locations. Setting it to nil.


[O] requesting help debugging tangle on windows

2012-02-14 Thread Andrew Cheng
Tangle works in my linux environment but doesn't quite work in my windows
environment. Here's my org file. It defines a code snippet named "block"
and then has a tangle section that refers to "block". Tangle results in a
file with two blank lines in my windows environment.

#+name: block
#+begin_src clojure :results silent
(+ 2 3)
#+end_src

#+begin_src clojure :tangle ../src/tmp.clj :results silent :exports none
:noweb yes
<>
#+end_src

But --- If my tangle section has regular code in it instead of referring to
other named <> then the resulting file after tangle has the code
you'd expect.

Below is my org setup. The *Messages* buffer doesn't contain any
interesting error messages. What can I do to find out what's going on?

I did evaluate the following snippet to get C-c C-c to properly evaluate a
clojure code block successfully on my machine. It didn't affect the issue
of tangling. Just thought I'd mention it to be thorough. The snippet is
from Eric Schulte. I thought that by deleting my elpa org folder and
starting emacs again I'd get the latest (with his fix) but I discovered
that I still needed to run this snippet to get C-c C-c to work.

Thanks in advance for any help!

(defun org-babel-execute:clojure (body params)
 "Execute a block of Clojure code with Babel."
 (require 'slime)
 (with-temp-buffer
   (insert (org-babel-expand-body:clojure body params))
   ((lambda (result)
  (let ((result-params (cdr (assoc :result-params params
(if (or (member "scalar" result-params)
(member "verbatim" result-params))
result
  (condition-case nil (org-babel-script-escape result)
(error result)
(slime-eval
 `(swank:eval-and-grab-output
   ,(buffer-substring-no-properties (point-min) (point-max)))
 (cdr (assoc :package params))

Emacs  : GNU Emacs 24.0.50.1 (i386-mingw-nt5.1.2600)
 of 2011-09-03 on SHAN-PC
Package: Org-mode version 7.7

current state:
==
(setq
 org-export-blocks '((src org-babel-exp-src-block nil) (comment
org-export-blocks-format-comment t)
 (ditaa org-export-blocks-format-ditaa nil) (dot
org-export-blocks-format-dot nil))
 org-ctrl-c-ctrl-c-hook '(org-babel-hash-at-point
org-babel-execute-safely-maybe)
 org-export-preprocess-before-selecting-backend-code-hook
'(org-beamer-select-beamer-code)
 org-tab-first-hook '(org-hide-block-toggle-maybe
org-src-native-tab-command-maybe
  org-babel-hide-result-toggle-maybe)
 org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers
org-cycle-show-empty-lines
  org-optimize-window-after-visibility-change)
 org-agenda-before-write-hook '(org-agenda-add-entry-text)
 org-speed-command-hook '(org-speed-command-default-hook
org-babel-speed-command-hook)
 org-babel-pre-tangle-hook '(save-buffer)
 org-occur-hook '(org-first-headline-recenter)
 org-export-interblocks '((lob org-babel-exp-lob-one-liners) (src
org-babel-exp-inline-src-blocks))
 org-metaup-hook '(org-babel-load-in-session-maybe)
 org-confirm-elisp-link-function 'yes-or-no-p
 org-export-latex-format-toc-function 'org-export-latex-format-toc-default
 org-export-preprocess-before-normalizing-links-hook
'(org-remove-file-link-modifiers)
 org-clock-out-hook '(org-clock-remove-empty-clock-drawer)
 org-export-first-hook '(org-beamer-initialize-open-trackers)
 org-mode-hook '(#[nil "\300\301\302\303\304$\207"
   [org-add-hook change-major-mode-hook org-show-block-all
append local] 5]
 #[nil "\300\301\302\303\304$\207"
   [org-add-hook change-major-mode-hook
org-babel-show-result-all append local] 5]
 org-babel-result-hide-spec org-babel-hide-all-hashes)
 org-from-is-user-regexp nil
 org-export-latex-final-hook '(org-beamer-amend-header org-beamer-fix-toc
org-beamer-auto-fragile-frames
   org-beamer-place-default-actions-for-lists)
 org-export-latex-after-initial-vars-hook '(org-beamer-after-initial-vars)
 org-metadown-hook '(org-babel-pop-to-session-maybe)
 org-src-mode-hook '(org-src-babel-configure-edit-buffer
org-src-mode-configure-edit-buffer)
 org-after-todo-state-change-hook '(org-clock-out-if-current)
 org-export-blocks-postblock-hook '(org-exp-res/src-name-cleanup)
 org-babel-tangle-lang-exts '(("clojure" . "clj") ("emacs-lisp" . "el"))
 org-confirm-shell-link-function 'yes-or-no-p
 )


Re: [O] Bug: ob-clojure.el depends on deprecated swank-clojure [7.7]

2012-01-13 Thread Andrew Cheng
I think so. Here's *Messages* after (def ^:dynamic *state* {}) ...

org-babel-execute:clojure
Evaluate this clojure code block (state) on your system? (y or n)
executing Clojure code block (state)...
("" "#'user/*state*")

On Fri, Jan 13, 2012 at 2:48 PM, Eric Schulte  wrote:
> Alright,
>
> if you load ob-clojure.el and then evaluate the following to over-ride
> the existing definition of `org-babel-execute:clojure' does clojure code
> evaluation work?
>
> (defun org-babel-execute:clojure (body params)
>  "Execute a block of Clojure code with Babel."
>  (require 'slime)
>  (with-temp-buffer
>    (insert (org-babel-expand-body:clojure body params))
>    ((lambda (result)
>       (let ((result-params (cdr (assoc :result-params params
>         (if (or (member "scalar" result-params)
>                 (member "verbatim" result-params))
>             result
>           (condition-case nil (org-babel-script-escape result)
>             (error result)
>     (slime-eval
>      `(swank:eval-and-grab-output
>        ,(buffer-substring-no-properties (point-min) (point-max)))
>      (cdr (assoc :package params))
>
> Thanks,
>
> Andrew Cheng  writes:
>
>> I passed the question along to Phil Hagelberg in that Clojure google
>> group thread. His reply:
>>
>> "Yes, clojure-test-mode uses both slime-eval and slime-eval-async; he
>> should pick one of these like so:
>>
>> (defun clojure-test-eval (string &optional handler)
>>  (slime-eval-async `(swank:eval-and-grab-output ,string)
>>                    (or handler #'identity)))
>>
>> (defun clojure-test-eval-sync (string)
>>  (slime-eval `(swank:eval-and-grab-output ,string)))
>>
>> Actually swank:interactive-eval-region and friends are not elisp
>> functions; they are Clojure functions."
>>
>> (... end of reply) In case it helps, Stuart Sierra says he got
>> org-babel and clojure working together. His dotfiles are at
>> https://github.com/stuartsierra/dotfiles
>>
>> On Fri, Jan 13, 2012 at 1:09 AM, Eric Schulte  wrote:
>>> I personally no longer use Clojure (having graduated to Common Lisp :))
>>> so I'm not abreast of the current Clojure environment.
>>>
>>> The only function ob-clojure uses from swank-clojure is
>>> `swank:interactive-eval-region' (used with `slime-eval') in the
>>> `org-babel-execute:clojure' function.  Which function would now be used
>>> to evaluate a region of clojure code?  Would `slime-eval-region'
>>> suffice?
>>>
>>> Andrew Cheng  writes:
>>>
>>>> 
>>>>
>>>> Phil Hagelberg has said that the swank-clojure elisp package has been
>>>> deprecated and should not be used [1]. My version of ob-clojure.el
>>>> requires swank-clojure. If I don't have the swank-clojure package, I
>>>> get "org-babel-execute:clojure:Cannot open load file: swank-clojure".
>>>> If I follow the instructions at [2] and get the swank-clojure package,
>>>> I get past this error. Is org using a deprecated package, and is this
>>>> a bug? Thanks in advance.
>>>>
>>>> [1] https://groups.google.com/forum/#!starred/clojure/HT8wixvD3GE
>>>> [2] http://lists.gnu.org/archive/html/emacs-orgmode/2011-12/msg00629.html
>
> --
> Eric Schulte
> http://cs.unm.edu/~eschulte/



Re: [O] Bug: ob-clojure.el depends on deprecated swank-clojure [7.7]

2012-01-13 Thread Andrew Cheng
I passed the question along to Phil Hagelberg in that Clojure google
group thread. His reply:

"Yes, clojure-test-mode uses both slime-eval and slime-eval-async; he
should pick one of these like so:

(defun clojure-test-eval (string &optional handler)
 (slime-eval-async `(swank:eval-and-grab-output ,string)
   (or handler #'identity)))

(defun clojure-test-eval-sync (string)
 (slime-eval `(swank:eval-and-grab-output ,string)))

Actually swank:interactive-eval-region and friends are not elisp
functions; they are Clojure functions."

(... end of reply) In case it helps, Stuart Sierra says he got
org-babel and clojure working together. His dotfiles are at
https://github.com/stuartsierra/dotfiles

On Fri, Jan 13, 2012 at 1:09 AM, Eric Schulte  wrote:
> I personally no longer use Clojure (having graduated to Common Lisp :))
> so I'm not abreast of the current Clojure environment.
>
> The only function ob-clojure uses from swank-clojure is
> `swank:interactive-eval-region' (used with `slime-eval') in the
> `org-babel-execute:clojure' function.  Which function would now be used
> to evaluate a region of clojure code?  Would `slime-eval-region'
> suffice?
>
> Andrew Cheng  writes:
>
>> 
>>
>> Phil Hagelberg has said that the swank-clojure elisp package has been
>> deprecated and should not be used [1]. My version of ob-clojure.el
>> requires swank-clojure. If I don't have the swank-clojure package, I
>> get "org-babel-execute:clojure:Cannot open load file: swank-clojure".
>> If I follow the instructions at [2] and get the swank-clojure package,
>> I get past this error. Is org using a deprecated package, and is this
>> a bug? Thanks in advance.
>>
>> [1] https://groups.google.com/forum/#!starred/clojure/HT8wixvD3GE
>> [2] http://lists.gnu.org/archive/html/emacs-orgmode/2011-12/msg00629.html



[O] Bug: ob-clojure.el depends on deprecated swank-clojure [7.7]

2012-01-12 Thread Andrew Cheng


Phil Hagelberg has said that the swank-clojure elisp package has been
deprecated and should not be used [1]. My version of ob-clojure.el
requires swank-clojure. If I don't have the swank-clojure package, I
get "org-babel-execute:clojure:Cannot open load file: swank-clojure".
If I follow the instructions at [2] and get the swank-clojure package,
I get past this error. Is org using a deprecated package, and is this
a bug? Thanks in advance.

[1] https://groups.google.com/forum/#!starred/clojure/HT8wixvD3GE
[2] http://lists.gnu.org/archive/html/emacs-orgmode/2011-12/msg00629.html

Emacs  : GNU Emacs 23.3.1 (i686-pc-linux-gnu, GTK+ Version 2.24.5)
 of 2011-08-14 on rothera, modified by Debian
Package: Org-mode version 7.7

current state:
==
(setq
 org-export-latex-after-initial-vars-hook '(org-beamer-after-initial-vars)
 org-speed-command-hook '(org-speed-command-default-hook
                          org-babel-speed-command-hook)
 org-metaup-hook '(org-babel-load-in-session-maybe)
 org-after-todo-state-change-hook '(org-clock-out-if-current)
 org-babel-tangle-lang-exts '(("clojure" . "clj") ("emacs-lisp" . "el"))
 org-export-latex-format-toc-function 'org-export-latex-format-toc-default
 org-tab-first-hook '(org-hide-block-toggle-maybe
                      org-src-native-tab-command-maybe
                      org-babel-hide-result-toggle-maybe)
 org-src-mode-hook '(org-src-babel-configure-edit-buffer
                     org-src-mode-configure-edit-buffer)
 org-confirm-shell-link-function 'yes-or-no-p
 org-export-first-hook '(org-beamer-initialize-open-trackers)
 org-agenda-before-write-hook '(org-agenda-add-entry-text)
 org-blank-before-new-entry nil
 org-babel-pre-tangle-hook '(save-buffer)
 org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers
                  org-cycle-show-empty-lines
                  org-optimize-window-after-visibility-change)
 org-publish-project-alist '(("org-notes" :base-directory "/home/notroot/org/"
                              :base-extension "org" :publishing-directory
                              "/home/notroot/public_html/" :recursive t
                              :publishing-function org-publish-org-to-html
                              :headline-levels 4 :auto-preamble t)
                             ("org-static" :base-directory
                              "/home/notroot/org/" :base-extension

"css\\|js\\|png\\|jpg\\|gif\\|pdf\\|mp3\\|ogg\\|swf"
:publishing-directory "/home/notroot/public_html/" :recursive t
:publishing-function org-publish-attachment)
                             ("org" :components ("org-notes" "org-static")))
 org-export-preprocess-before-normalizing-links-hook
'(org-remove-file-link-modifiers)
 org-mode-hook '(#[nil "\300\301\302\303\304$\207"
                   [org-add-hook change-major-mode-hook org-show-block-all
                    append local]
                   5]
                 #[nil "\300\301\302\303\304$\207"
                   [org-add-hook change-major-mode-hook
                    org-babel-show-result-all append local]
                   5]
                 org-babel-result-hide-spec org-babel-hide-all-hashes)
 org-ctrl-c-ctrl-c-hook '(org-babel-hash-at-point
                          org-babel-execute-safely-maybe)
 org-confirm-elisp-link-function 'yes-or-no-p
 org-export-interblocks '((lob org-babel-exp-lob-one-liners)
                          (src org-babel-exp-inline-src-blocks))
 org-clock-out-hook '(org-clock-remove-empty-clock-drawer)
 org-occur-hook '(org-first-headline-recenter)
 org-export-preprocess-before-selecting-backend-code-hook
'(org-beamer-select-beamer-code)
 org-export-latex-final-hook '(org-beamer-amend-header org-beamer-fix-toc
                               org-beamer-auto-fragile-frames
                               org-beamer-place-default-actions-for-lists)
 org-metadown-hook '(org-babel-pop-to-session-maybe)
 org-export-blocks '((src org-babel-exp-src-block nil)
                     (comment org-export-blocks-format-comment t)
                     (ditaa org-export-blocks-format-ditaa nil)
                     (dot org-export-blocks-format-dot nil))
 )