[BUG] Wrong display when URL contains "/-/" [9.6.1 (release_9.6.1-264-g236bd4)]

[Rafael Laboissière]

Dear Org Mode developpers,

The following content is not displaying correctly for me (see attached 
screenshot):


  [[https://host/some/-/path][[pre link]​]] this is underlined, but shouldn't 
be [[https://host/another/-/path][[post link]​]]
  [[https://host/some/path][[pre link]​]] this is okay 
[[https://host/another/path][[post link]​]]

I guess that this is caused by the presence of "/-/" substrings in the 
URLs. Such URLs containing this substring are used, in instance, by 
GitLab.


Best,

Rafael Laboissière


 Emacs  : GNU Emacs 28.2 (build 1, x86_64-pc-linux-gnu, GTK+ Version 3.24.36, 
cairo version 1.16.0)
  of 2023-01-18, modified by Debian
 Package: Org mode version 9.6.1 (release_9.6.1-264-g236bd4 @ 
/home/rafael/.emacs.d/el-get/org-mode/lisp/)

 current state:
 ==
 (setq
  org-link-elisp-confirm-function 'yes-or-no-p
  org-bibtex-headline-format-function #[257 "\300
\236A\207" [:title] 3 "\n\n(fn 
ENTRY)"]
  org-persist-after-read-hook '(org-element--cache-persist-after-read)
  org-export-before-parsing-hook '(org-attach-expand-links)
  org-cycle-tab-first-hook '(org-babel-hide-result-toggle-maybe
org-babel-header-arg-expand)
  org-archive-hook '(org-attach-archive-delete-maybe)
  org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-show-empty-lines
  org-cycle-optimize-window-after-visibility-change
  org-cycle-display-inline-images)
  org-persist-before-read-hook '(org-element--cache-persist-before-read)
  org-mode-hook '(#[0 "\300\301\302\303\304$\207"
   [add-hook change-major-mode-hook org-fold-show-all append
local]
   5]
 #[0 "\300\301\302\303\304$\207"
   [add-hook change-major-mode-hook org-babel-show-result-all
append local]
   5]
 org-babel-result-hide-spec org-babel-hide-all-hashes)
  org-confirm-shell-link-function 'yes-or-no-p
  outline-isearch-open-invisible-function 'outline-isearch-open-invisible
  org-agenda-before-write-hook '(org-agenda-add-entry-text)
  org-src-mode-hook '(org-src-babel-configure-edit-buffer
 org-src-mode-configure-edit-buffer)
  org-confirm-elisp-link-function 'yes-or-no-p
  org-speed-command-hook '(org-speed-command-activate
  org-babel-speed-command-activate)
  org-persist-directory "/var/tmp/org-persist-l3BeFI"
  org-fold-core-isearch-open-function 'org-fold--isearch-reveal
  org-persist-before-write-hook '(org-element--cache-persist-before-write)
  org-tab-first-hook '(org-babel-hide-result-toggle-maybe
  org-babel-header-arg-expand)
  org-link-shell-confirm-function 'yes-or-no-p
  org-babel-pre-tangle-hook '(save-buffer)
  org-agenda-loop-over-headlines-in-active-region nil
  org-occur-hook '(org-first-headline-recenter)
  org-metadown-hook '(org-babel-pop-to-session-maybe)
  org-link-parameters '(("attachment" :follow org-attach-follow :complete
org-attach-complete-link)
   ("id" :follow org-id-open)
   ("eww" :follow org-eww-open :store org-eww-store-link)
   ("rmail" :follow org-rmail-open :store
org-rmail-store-link)
   ("mhe" :follow org-mhe-open :store org-mhe-store-link)
   ("irc" :follow org-irc-visit :store org-irc-store-link
:export org-irc-export)
   ("info" :follow org-info-open :export org-info-export
:store org-info-store-link :insert-description
org-info-description-as-command)
   ("gnus" :follow org-gnus-open :store
org-gnus-store-link)
   ("docview" :follow org-docview-open :export
org-docview-export :store org-docview-store-link)
   ("bibtex" :follow org-bibtex-open :store
org-bibtex-store-link)
   ("bbdb" :follow org-bbdb-open :export org-bbdb-export
:complete org-bbdb-complete-link :store
org-bbdb-store-link)
   ("w3m" :store org-w3m-store-link)
   ("doi" :follow org-link-doi-open :export
org-link-doi-export)
   ("file+sys") ("file+emacs")
   ("shell" :follow org-link--open-shell)
   ("news" :follow
#[514 "\301\300\302Q\"\207"
  ["news" browse-url ":"] 6 "\n\n(fn U

Unwanted italics formatting between two URLs

[Rafael Laboissière]

Hello,

In an org-mode buffer, I have the following:

   [[https://first/-/url/][pre]] text [[https://second-url/?][post]]

The “pre” and “text” words appear (wrongly) in italics, as you can see in 
the attached screenshot. This misbehavior is certainly related to the 
presence of the characters “-” and “?” in the URLs.


I am using Org mode version 9.5.1 (release_9.5.1-11-g96d91b)

Best,

Rafael Laboissière

[O] Pushing commits to the Work Git repository

[Rafael Laboissière]

Hi,

Is there any policy for pushing commits to the Worg Git repository?  I 
fixed the GitHub paths in file org-outside-org.org, as per the patch 
attached to this message and would like to contribute it.


Best,

Rafael
>From 1458b431c347fdf53ce84eecc2e2503385e93984 Mon Sep 17 00:00:00 2001
From: Rafael Laboissiere 
Date: Wed, 6 Feb 2019 16:33:36 +0100
Subject: [PATCH] Transfer maintainership of outshine, outorg, and navi-mode

---
 org-tutorials/org-outside-org.org | 16 
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/org-tutorials/org-outside-org.org b/org-tutorials/org-outside-org.org
index 8fe2ae92..b8bc5606 100644
--- a/org-tutorials/org-outside-org.org
+++ b/org-tutorials/org-outside-org.org
@@ -134,8 +134,8 @@ To sum it up in one sentence:
 Download =outshine.el= (or clone the github-repo) and copy it to a location
 where Emacs can find it:
 
-| https://github.com/tj64/outshine   |
-| git clone g...@github.com:tj64/outshine.git |
+| https://github.com/alphapapa/outshine   |
+| git clone g...@github.com:alphapapa/outshine.git |
 
 Use this in your '.emacs' to get started:
 
@@ -323,8 +323,8 @@ works too).
 
 You can download the file (or clone the github-repo) here:
 
-| https://github.com/tj64/outorg   |
-| git clone g...@github.com:tj64/outorg.git |
+| https://github.com/alphapapa/outorg   |
+| git clone g...@github.com:alphapapa/outorg.git |
 
 /outorg/ requires Org-mode too, thus should be loaded after Org-mode. Insert
 
@@ -597,10 +597,10 @@ offering a vast amount of possible 'views' at the original-buffer.
 
 Download (or clone the github-repos of) the three required libraries
 
-| `navi-mode.el' | https://github.com/tj64/navi   |
-|| git clone g...@github.com:tj64/navi.git |
-| `outshine.el'  | https://github.com/tj64/outshine   |
-| `outorg.el'| https://github.com/tj64/outorg |
+| `navi-mode.el' | https://github.com/alphapapa/navi   |
+|| git clone g...@github.com:alphapapa/navi.git |
+| `outshine.el'  | https://github.com/alphapapa/outshine   |
+| `outorg.el'| https://github.com/alphapapa/outorg |
 
 and put them in a place where Emacs can find them (on the Emacs 'load-path').
 Follow the installation instructions in =outshine.el= and =outorg.el=.
-- 
2.19.2

Re: [O] [PATCH] test-org/fuzzy-links

[Rafael Laboissière]

* Nicolas Goaziou <m...@nicolasgoaziou.fr> [2017-04-15 16:53]:


Rafael Laboissière <raf...@laboissiere.net> writes:

Function org-backward-heading-same-level fails in a specific case. 
Suppose the following org-mode file:


== 
* first 
* second 
* third 
==


where '* first' is right at the beginning of the file.

When the cursor is at line '* third' and 
org-backward-heading-same-level is called, we go to the previous line 
correctly.  However when the cursor is at '* second', 
org-backward-heading-same-level does bring us to the first line but 
emits an error "Beginning of buffer".  It seems that the patch 
attached to this message fixes the problem.


Thank you. I eventually applied a slightly different patch, and added 
some tests.


Thanks.

Best,

Rafael

[O] [PATCH] test-org/fuzzy-links

[Rafael Laboissière]

Function org-backward-heading-same-level fails in a specific case. 
Suppose the following org-mode file:


==
* first
* second
* third
==

where '* first' is right at the beginning of the file.

When the cursor is at line '* third' and org-backward-heading-same-level 
is called, we go to the previous line correctly.  However when the cursor 
is at '* second', org-backward-heading-same-level does bring us to the 
first line but emits an error "Beginning of buffer".  It seems that the 
patch attached to this message fixes the problem.


Best,

Rafael
>From ff792a00e28b7b0ca4fde98f72611ef8079daf04 Mon Sep 17 00:00:00 2001
From: Rafael Laboissiere 
Date: Wed, 12 Apr 2017 22:18:54 +0200
Subject: [PATCH] Do not fail when heading is at the beginning of the buffer

* org.el (org-forward-heading-same-level): Do not move backward when
at the beginning of the buffer
---
 lisp/org.el | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/lisp/org.el b/lisp/org.el
index 17caa3fa6..b46369ad5 100644
--- a/lisp/org.el
+++ b/lisp/org.el
@@ -24071,7 +24071,8 @@ non-nil it will also look at invisible ones."
   (count (if arg (abs arg) 1))
   (result (point)))
   (while (and (prog1 (> count 0)
-		(forward-char (if (and arg (< arg 0)) -1 1)))
+		(forward-char (if (and arg (< arg 0))
+  (if (= (point) 1) 0 -1) 1)))
   (funcall f org-outline-regexp-bol nil 'move))
 (let ((l (- (match-end 0) (match-beginning 0) 1)))
   (cond ((< l level) (setq count 0))
-- 
2.11.0

Re: [O] OT: two interesting articles about (non-)reproducible research

[Rafael Laboissière]

* Nick Dokos  [2016-04-08 14:54]:

[off-topic: not even a gratuitous org reference. My only excuse is the 
general interest of list members on reproducible research (org-babel! 
OK, that's the requisite gratuitous reference: I feel better now :-) )]


538.com has published a couple of interesting articles on some poli-sci 
research:


 
http://fivethirtyeight.com/features/how-two-grad-students-uncovered-michael-lacour-fraud-and-a-way-to-change-opinions-on-transgender-rights/#ss-1

and

 
http://fivethirtyeight.com/datalab/as-a-major-retraction-shows-were-all-vulnerable-to-faked-data/

N.B. the reference to the "open data" policies of AJPS - that seems to 
be clearly the future direction of research (and, imo, it's about time).


Ironically, the results "found" in the retreated paper by LaCour & Green 
(2014) have been recently replicated by Broockman & Kalla (2016):


http://www.sciencemag.org/news/2016/04/talking-people-about-gay-and-transgender-issues-can-change-their-prejudices

Rafael