Re: [O] Table formula from code block
Hello,
Eric S Fraga writes:
> On Tuesday, 24 Jan 2017 at 14:14, Michael Welle wrote:
>> ohschockschwerenot, I found it. I set org-confirm-babel-evaluate to a
>> function that does look at the body of the code block and then decides
>> if it should be executed without confirmation or not.
>>
>> I'm not sure, why that is a problem. In the case of the examples, the
>> function returns t and that is the default value of o-c-b-evaluate.
>
> Interesting. I cannot help with this but I would be quite interested in
> seeing your function in case it's something I could use! Would it be
> possible to share?
it's quite a hack. I don't want Org to evaluate source code blocks
without confirmation. This could lead to all sorts of trouble. On the
other hand, there are a few source code blocks, that I want to eval
without confirmation. So I use this:
(defun hmw/org-post-publish-export-confirm-evaluate (lang body)
(not (string-match "^#post publish exporter" body)))
(setq org-confirm-babel-evaluate 'hmw/org-post-publish-export-confirm-evaluate)
A source code block looks like follows:
#+BEGIN_SRC shell :exports results :shebang #!/bin/sh :var
SRCDIR=(expand-file-name (plist-get plist :base-directory)) :var
DESTDIR=(expand-file-name (plist-get plist :publishing-directory))
#post publish exporter
(
echo "Starting esxwithforeman.org $(date)"
cd ${SRCDIR}
echo "Finish esxwithforeman.org $(date)"
) >> /tmp/c0t0d0s0_publish.log 2>&1
#+END_SRC
As you can see, this is not a security feature, esp. now that I
published it ;).
Regards
hmw
Re: [O] Table formula from code block
On Tuesday, 24 Jan 2017 at 14:14, Michael Welle wrote: > ohschockschwerenot, I found it. I set org-confirm-babel-evaluate to a > function that does look at the body of the code block and then decides > if it should be executed without confirmation or not. > > I'm not sure, why that is a problem. In the case of the examples, the > function returns t and that is the default value of o-c-b-evaluate. Interesting. I cannot help with this but I would be quite interested in seeing your function in case it's something I could use! Would it be possible to share? thanks, eric -- : Eric S Fraga (0xFFFCF67D), Emacs 26.0.50.1, Org release_9.0.3-241-gc3d67b signature.asc Description: PGP signature
Re: [O] Table formula from code block
Hello, Eric S Fraga writes: > On Tuesday, 24 Jan 2017 at 10:52, Michael Welle wrote: >> Eric S Fraga writes: >>> Works fine for me with relatively recent org from git. >> that's strange. I pulled last sunday. > > Well, I have just this minute updated and tried again. It still works > for me. ohschockschwerenot, I found it. I set org-confirm-babel-evaluate to a function that does look at the body of the code block and then decides if it should be executed without confirmation or not. I'm not sure, why that is a problem. In the case of the examples, the function returns t and that is the default value of o-c-b-evaluate. Regards hmw
Re: [O] Table formula from code block
Hello, Roger Mason writes: [...] > #+tblname: display-results > | skribilo path | infile | engine| To Engine | To > Typeset | > > |-++---+---+| > | "/opt/skribilo-git/bin" | "skribilo-input-1" | "context" | Success | > | Success | > > #+TBLFM: $4='(org-sbe "skribilo_to_engine" (path $1) (infile $2) (engine $3) > )::$5='(org-sbe "engine_to_typeset" (path $1) (infile $2) (engine $3) ) > > Maybe emacs has a means of doing that wrapping, but the things I tried > (like concatenating the quotes with the table entry with (concat...)) did > not work. There is a thread of Karl and me talking about that, maybe in last november or december. > I see that in your example you refer to the column heading in the > #+TBLFM line. In my working code I refer to the columns by number ($1, > $2 etc). Uhm, no ;). Unfortunately the column and the script block share the same name in the example. That should be no problem, I changed that and still no success with current Org. Org 8 works as expected. Regards hmw
Re: [O] Table formula from code block
Hello, Eric S Fraga writes: > On Tuesday, 24 Jan 2017 at 10:52, Michael Welle wrote: >> Eric S Fraga writes: >>> Works fine for me with relatively recent org from git. >> that's strange. I pulled last sunday. > > Well, I have just this minute updated and tried again. It still works > for me. I must doing something wrong. But what? I've changed org-bbdb, but that shouldn't interfere. Regards hmw
Re: [O] Table formula from code block
On Tuesday, 24 Jan 2017 at 10:52, Michael Welle wrote: > Eric S Fraga writes: >> Works fine for me with relatively recent org from git. > that's strange. I pulled last sunday. Well, I have just this minute updated and tried again. It still works for me. -- : Eric S Fraga (0xFFFCF67D), Emacs 26.0.50.1, Org release_9.0.3-262-g5210de signature.asc Description: PGP signature
Re: [O] Table formula from code block
Hello, Eric S Fraga writes: > On Monday, 23 Jan 2017 at 12:04, Michael Welle wrote: >> Hello, >> >> I think there are several problems, starting with BEGIN_SRC sh and some >> more. But fixing them doesn't bring success. I even have trouble to get >> a minimal example to work: >> >> #+NAME: foo >> #+BEGIN_SRC emacs-lisp >> (+ 4 4) >> #+END_SRC >> >> >> | bar | foo| >> |+| >> | 42 | #ERROR | >> #+TBLFM: $2='(org-sbe "foo")::$1=42 > > Works fine for me with relatively recent org from git. I just tried the Org version, that comes with Emacs (8.2.10) and there the above example works as expected. Regards hmw
Re: [O] Table formula from code block
Hello, Michael Welle writes: ... > #+NAME: foo > #+BEGIN_SRC emacs-lisp > > (+ 4 4) > #+END_SRC > > > | bar | foo| > |+| > | 42 | #ERROR | > > #+TBLFM: $2='(org-sbe "foo")::$1=42 > > I'm not sure, what the problem is. Looking at org-sbe there is > something, I don't understand. In the end org-babel-execute-src-block is > called. That executes the _current_ source code block. But I don't > understand, how foo (in this example) becomes the current source code > block. well, the docstring is a bit misleading, IMHO. Current source code block means that the function looks around to find a source code block. I though, it means the source code block 'I am in' at the moment. I've tracked it down to org-babel-check-confirm-evaluate so far. In the let*, export and eval are nil. The 5. element of info is nil, that means (goto-char (nth 5 info)) will barf. Hmm. Regards hmw
Re: [O] Table formula from code block
Hello Roland and Michael,
Thank you both for looking at this.
Roland Everaert writes:
> I will try to look at how I used org-sbe, but I do remind that I had to do
> the following (exerpt from a post on
> the list by me on the same subjet):
>
> "It works. But I had to set some headers in the code block itself as
> following:
>
> :exports results :results value"
I will give that a try, thank you.
Michael Welle writes:
> I think there are several problems, starting with BEGIN_SRC sh and some
> more. But fixing them doesn't bring success. I even have trouble to get
> a minimal example to work:
>
> #+NAME: foo
> #+BEGIN_SRC emacs-lisp
>
> (+ 4 4)
> #+END_SRC
>
>
> | bar | foo|
> |+|
> | 42 | #ERROR |
>
> #+TBLFM: $2='(org-sbe "foo")::$1=42
>
> I'm not sure, what the problem is. Looking at org-sbe there is
> something, I don't understand. In the end org-babel-execute-src-block is
> called. That executes the _current_ source code block. But I don't
> understand, how foo (in this example) becomes the current source code
> block. Can someone explain, please? Is there a side effect, I don't see?
> Or maybe a regression?
I have experimented some more and discovered that I can get the code to
work if I wrap the table entries in quotes, i.e. making them into
explicit strings:
#+tblname: display-results
| skribilo path | infile | engine| To Engine | To
Typeset |
|-++---+---+|
| "/opt/skribilo-git/bin" | "skribilo-input-1" | "context" | Success |
Success|
#+TBLFM: $4='(org-sbe "skribilo_to_engine" (path $1) (infile $2) (engine $3)
)::$5='(org-sbe "engine_to_typeset" (path $1) (infile $2) (engine $3) )
Maybe emacs has a means of doing that wrapping, but the things I tried
(like concatenating the quotes with the table entry with (concat...)) did
not work.
I see that in your example you refer to the column heading in the
#+TBLFM line. In my working code I refer to the columns by number ($1,
$2 etc).
I'm appending the current version of the code, in case anyone is
interested.
Cheers,
Roger
===
# RunTests.org ---
# Author: rma...@cryptoperthite.esd.mun.ca
# Version: $Id: Results.org,v 0.0 2016/12/07 15:01:38 rmason Exp$
#+TITLE: Skribe Input Format: Whatever
#+OPTIONS: toc:nil num:nil author:nil
#+LATEX_HEADER: \usepackage{natbib} \usepackage{apalike} \usepackage{lineno}
#+LATEX_HEADER: \usepackage{sectsty} \usepackage{setspace} \usepackage{parskip}
# Turned OFF #+LATEX: \linenumbers \doublespacing \usepackage{ulem}
\usepackage{titlecaps}
#+LATEX: \subsubsectionfont{\itshape}
# #+LATEX: \subsectionfont{\titlecap} -- buggers up en-dashes in
# subsection titles
#+LATEX: \sectionfont{\MakeUppercase}
* Setup :exports none
#+BEGIN_SRC emacs-lisp :results none :exports none
(setq org-confirm-babel-evaluate nil)
#+END_SRC
I'd like a default input filename, but I could not get this to do anything.
#+PROPERTY: infile "skribilo-input"
* The input document
When I call this with name =skribilo-input= rather than tangling the
file, Org opens a Geiser REPL and the processing fails. I'm not sure
Guile can process the Skribe syntax.
#+NAME: skribilo-input
#+BEGIN_SRC scheme :tangle "skribilo-input.skb"
; Whatever.skb
#+END_SRC
* The scripts
** Skribilo to supported engine format
#+NAME: skribilo_to_engine
#+BEGIN_SRC bash :results output replace :var path="" :var engine="" :var
infile=""
skribilo=$path/skribilo
rm -rf $engine; mkdir -p $engine
result="Failed"
$skribilo -t $engine -o $engine/$infile.$engine $infile.skb
[ "$(ls -A $engine)" ] && result="Success"
if [ -e "setup.tex" ]
then
mv setup.tex $engine/
fi
echo "$result"
#+END_SRC
*** Example
#+CALL: skribilo_to_engine(engine="context", path="/opt/skribilo-git/bin",
infile="skribilo-input")
** Engine to typeset document
#+NAME: engine_to_typeset
#+BEGIN_SRC bash :results output replace :var engine="" :var infile=""
outfile=$infile"_"$engine
wd=$(pwd)
result="Failure"
if [ $engine = "context" ]; then
cd context
source /opt/context/tex/setuptex 2>&1 > /tmp/log
context --purgeall --result="$outfile.pdf" "$infile.$engine" 2>&1 >
/tmp/log
[ -e "$outfile.pdf" ] && result="Success"
elif [ $engine = "latex" ]; then
cd latex
pdflatex $infile.$engine 2>&1 > /tmp/log
mv $infile.pdf $outfile.pdf
[ -e "$outfile.pdf" ] && result="Success"
elif [ $engine = "lout" ];then
cd lout
lout $infile.$engine > $outfile.ps
ps2pdf $outfile.ps
[ -e "$outfile.pdf" ] && result="Success"
else
result="n.a."
fi
cd $wd
echo "$result"
#+END_SRC
*** Example
#+CALL: engine_to_typeset(engine="context", infile="skribilo-input")
* The result table
Should be able to run the tests from the table. See
http://orgmode.org/worg/org-contrib/babel/intro.html#argume
Re: [O] Table formula from code block
Hello, Eric S Fraga writes: > On Monday, 23 Jan 2017 at 12:04, Michael Welle wrote: >> Hello, >> >> I think there are several problems, starting with BEGIN_SRC sh and some >> more. But fixing them doesn't bring success. I even have trouble to get >> a minimal example to work: >> >> #+NAME: foo >> #+BEGIN_SRC emacs-lisp >> (+ 4 4) >> #+END_SRC >> >> >> | bar | foo| >> |+| >> | 42 | #ERROR | >> #+TBLFM: $2='(org-sbe "foo")::$1=42 > > Works fine for me with relatively recent org from git. that's strange. I pulled last sunday. Regards hmw
Re: [O] Table formula from code block
On Monday, 23 Jan 2017 at 12:04, Michael Welle wrote: > Hello, > > I think there are several problems, starting with BEGIN_SRC sh and some > more. But fixing them doesn't bring success. I even have trouble to get > a minimal example to work: > > #+NAME: foo > #+BEGIN_SRC emacs-lisp > (+ 4 4) > #+END_SRC > > > | bar | foo| > |+| > | 42 | #ERROR | > #+TBLFM: $2='(org-sbe "foo")::$1=42 Works fine for me with relatively recent org from git. -- : Eric S Fraga (0xFFFCF67D), Emacs 26.0.50.1, Org release_9.0.3-191-g7404e3 signature.asc Description: PGP signature
Re: [O] Table formula from code block
Hello, I think there are several problems, starting with BEGIN_SRC sh and some more. But fixing them doesn't bring success. I even have trouble to get a minimal example to work: #+NAME: foo #+BEGIN_SRC emacs-lisp (+ 4 4) #+END_SRC | bar | foo| |+| | 42 | #ERROR | #+TBLFM: $2='(org-sbe "foo")::$1=42 I'm not sure, what the problem is. Looking at org-sbe there is something, I don't understand. In the end org-babel-execute-src-block is called. That executes the _current_ source code block. But I don't understand, how foo (in this example) becomes the current source code block. Can someone explain, please? Is there a side effect, I don't see? Or maybe a regression? Regards hmw
[O] Table formula from code block
Hello, I have these code blocks: #+BEGIN_SRC sh :tangle "skribilo_to_engine.sh" #!/usr/local/bin/bash infile=$3 engine=$2 skribilo=$1/skribilo rm -rf $engine; mkdir -p $engine result="Failed" $skribilo -t $engine -o $engine/$infile.$engine $infile.skb [ "$(ls -A $engine)" ] && result="Success" if [ -e "setup.tex" ] then mv setup.tex $engine/ fi echo "$result" #+END_SRC #+BEGIN_SRC sh :results none chmod u+x skribilo_to_engine.sh #+END_SRC #+NAME: skribilo_to_engine #+BEGIN_SRC sh :results output replace :var path="/opt/skribilo-git/bin" :var engine="" :var infile="Author_7960" ./skribilo_to_engine.sh $path $engine $infile #+END_SRC === I tangle the code block and make it executable. I think it should be possible to run the code blocks from the table, but it errors out: #+tblname: summaries | engine | To Engine | |-+---| | context | #ERROR| #+TBLFM: $2='(org-sbe "skribilo_to_engine" (engine $1) ) (See http://orgmode.org/worg/org-contrib/babel/intro.html#arguments-to-source-code-blocks). What am I doing wrong? Thanks, Roger GNU Emacs 25.1.1 (i386-portbld-freebsd10.1, GTK+ Version 2.24.29) of 2016-11-04 Org mode version 9.0.3 (release_9.0.3-170-gfed1cf)
