Re: [O] Wrong comment character when adding file local variables?

2013-06-10 Thread Rainer M Krug
Vitalie Spinu spinu...@gmail.com writes:

   Rainer M Krug r.m.k...@gmail.com
   on Fri, 7 Jun 2013 17:40:53 +0200 wrote:

   On Friday, June 7, 2013, Vitalie Spinu wrote:
   All your examples are placed in fundamental mode. The comments are
   treated by org and thus are correct, local variables are inserted
   according to the major mode.

   The question is why - all .R files are automatically in r mode when I open 
 them
   and all other R files tangle fine.

 Because they are placed automatically in R mode, your files are in
 fundamental mode.

I think I get it now: my files are interpreted by emacs as fundamental
files. But when I visit them in a buffer, the buffer is interpreted as
an R buffer.

Thanks.

Rainer



 Vitalie



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-- 
Rainer M. Krug

email: RMKrugatgmaildotcom




Re: [O] Wrong comment character when adding file local variables?

2013-06-10 Thread Rainer M Krug

Nick Dokos ndo...@gmail.com writes:

 Rainer M Krug rai...@krugs.de writes:

 Vitalie Spinu spinu...@gmail.com writes:

   Rainer M Krug r.m.k...@gmail.com
   on Fri, 7 Jun 2013 17:40:53 +0200 wrote:

   On Friday, June 7, 2013, Vitalie Spinu wrote:
   All your examples are placed in fundamental mode. The comments are
   treated by org and thus are correct, local variables are inserted
   according to the major mode.

   The question is why - all .R files are automatically in r mode when I 
 open them
   and all other R files tangle fine.

 Because they are placed automatically in R mode, your files are in
 fundamental mode.

 I think I get it now: my files are interpreted by emacs as fundamental
 files. But when I visit them in a buffer, the buffer is interpreted as
 an R buffer.


 Almost. Files are *opened* in some mode: if no other mode is
 found, they are opened in fundamental mode - by themselves, they are not
 fundamental files or R-mode files or ... That's an interpretation
 that emacs superimposes on them when it visits them. To do that, it uses
 information in auto-mode-alist, or in any mode specification in the file
 itself (using file-local variables embedded in comments).

 So when you open a file foo, it will be opened in fundamental mode
 (absent some other specification in the auto-mode-alist). When you add
 contents, the mode does not change. If you save it as file foo and
 then reopen it, it will still be in fundamental mode.  But if you save
 it as foo.org and then reopen it, the auto-mode-alist will tell emacs
 to change the mode to org-mode (assuming that the .org suffix has been
 set up correctly in the auto-mode-alist).  It does not matter what the
 contents were: it could be a C program e.g.  and it would still be
 opened in org mode.

Thanks for this very clear description of how this happened. I think I
understand what is going here.

And now I see why the block NAMESPACE file uses the R comment character,
while the others don't: NAMESPACE is in the auto-mode-alist defined as
an R file.
Adding DESCRIPTION as an R file would not be useful, as it is not an R
file - it follows the Debian Control File rules. I dont think there is a
mode for these?

But wouldn't this mechanism be an argument for a header argument to
enable adding of the mode of the file as tangled?
Always adding a local variable to the tangled file might cause problems
with certain formats which do not support comments.

Cheers,

Rainer

-- Rainer M. Krug

email: RMKrugatgmaildotcom


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Description: PGP signature


Re: [O] Wrong comment character when adding file local variables?

2013-06-08 Thread Nick Dokos
Rainer M Krug r.m.k...@gmail.com writes:

 On Friday, June 7, 2013, Vitalie Spinu wrote:

 All your examples are placed in fundamental mode. The comments are
 treated by org and thus are correct, local variables are inserted
 according to the major mode.

 The question is why - all .R files are automatically in r mode when I
 open them and all other R files tangle fine. 

That's because the auto-mode-alist tells emacs that .R files should be
in R-mode, so after emacs opens the file, it calls the R-mode function.

 I don't how this could be easily fixed on org side, but you can
 solve it straightforwardly with:

 (add-to-list 'auto-mode-alist (cons NAME\\|DESC 'R-mode))

 Ok - I'check it out on Monday.


That's one way: it's got its downside in that the names have to match,
so you have to remember to modify the auto-mode-alist when you use
different names when tangling.

Another way is to modify the function below:

  I use the following in my .emacs file to set the
  post-tangle-hook to add the local file variables:

  ,
  |  (defvar org-babel-tangled-file nil
  |If non-nill, current file was tangled with org-babel-tangle)
  |  (put 'org-babel-tangled-file 'safe-local-variable 'booleanp)
  |
  |  (defun org-babel-mark-file-as-tangled ()
  (R-mode)  ; 
  | (add-file-local-variable 'org-babel-tangled-file t)
  | (add-file-local-variable 'buffer-read-only t)
  | ;; (add-file-local-variable 'eval: (auto-revert-mode))
  | (basic-save-buffer))
  |
  |  (add-hook 'org-babel-post-tangle-hook
  |'org-babel-mark-file-as-tangled)
  `



to call R-mode explicitly. That's got its own downside: all your
tangled files are going to be in R-mode.

The point is that you have to tell emacs somehow what you are doing:
it can't guess that you are producing R-mode files without some help.

-- 
Nick




[O] Wrong comment character when adding file local variables?

2013-06-07 Thread Rainer M Krug
Hi

when tangling the following file

,
| * Package Files
| ** DESCRIPTION File
| :PROPERTIES:
| :tangle:   ./DESCRIPTION
| :shebang:  
| :padline: no
| :no-expand: TRUE
| :comments: no
| :END:
| #+begin_src R
|   Package: asmDrak
| #+end_src
| 
| ** NAMESPACE File
| :PROPERTIES:
| :tangle:   ./NAMESPACE
| :shebang:  
| :padline: no
| :no-expand: TRUE
| :comments: no
| :END:
| #+begin_src R
|  this is a test
| #+end_src
| 
| 
| ** DESC2 File
| :PROPERTIES:
| :tangle:   ./DESC2
| :shebang:  
| :padline: no
| :no-expand: TRUE
| :comments: yes
| :END:
| #+begin_src R
|   this is a test
| #+end_src
`

I get the following tangled files:

DESCRIPTION:

,
| Package: asmDrak
| 
| ;; Local Variables:
| ;; org-babel-tangled-file: t
| ;; buffer-read-only: t
| ;; End:
`

which has the wrong comment character (should have #)

NAMESPACE:

,
| this is a test
| 
| ## Local Variables:
| ## org-babel-tangled-file: t
| ## buffer-read-only: t
| ## End:
`

which has the correct comment characters, and 

DESC2

,
| ## [[file:~/tmp/tangle.org::*DESC2%20File][DESC2\ File:1]]
| this is a test
| ## DESC2\ File:1 ends here
| 
| ;; Local Variables:
| ;; org-babel-tangled-file: t
| ;; buffer-read-only: t
| ;; End:
`

which has the correct comment characters for the comments, but the wrong
ones for the file local variables.

I use the following in my .emacs file to set the post-tangle-hook to add
the local file variables:

,
|   (defvar org-babel-tangled-file nil
| If non-nill, current file was tangled with org-babel-tangle)
|   (put 'org-babel-tangled-file 'safe-local-variable 'booleanp)
| 
|   (defun org-babel-mark-file-as-tangled ()
| (add-file-local-variable 'org-babel-tangled-file t)
| (add-file-local-variable 'buffer-read-only t)
| ;; (add-file-local-variable 'eval: (auto-revert-mode))
| (basic-save-buffer))
|   
|   (add-hook 'org-babel-post-tangle-hook 'org-babel-mark-file-as-tangled)
`

I assume this is a bug somewhere?


Org-mode version 8.0.3 (release_8.0.3-211-gf16b53 @
/home/rkrug/.emacs.d/org-mode/lisp/)

GNU Emacs 24.3.1 (i686-pc-linux-gnu, GTK+ Version 3.6.4)
 of 2013-04-14 on actinium, modified by Debian

Cheers,

Rainer

-- 
Rainer M. Krug

email: RMKrugatgmaildotcom


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Description: PGP signature


Re: [O] Wrong comment character when adding file local variables?

2013-06-07 Thread Vitalie Spinu

All your examples are placed in fundamental mode. The comments are
treated by org and thus are correct, local variables are inserted
according to the major mode.

I don't how this could be easily fixed on org side, but you can solve it
straightforwardly with:

   (add-to-list 'auto-mode-alist (cons NAME\\|DESC 'R-mode))

 Vitalie

  Rainer M Krug rai...@krugs.de
  on Fri, 07 Jun 2013 15:12:58 +0200 wrote:

  Hi

  when tangling the following file

  ,
  | * Package Files
  | ** DESCRIPTION File
  | :PROPERTIES:
  | :tangle:   ./DESCRIPTION
  | :shebang:  
  | :padline: no
  | :no-expand: TRUE
  | :comments: no
  | :END:
  | #+begin_src R
  |   Package: asmDrak
  | #+end_src
  | 
  | ** NAMESPACE File
  | :PROPERTIES:
  | :tangle:   ./NAMESPACE
  | :shebang:  
  | :padline: no
  | :no-expand: TRUE
  | :comments: no
  | :END:
  | #+begin_src R
  |  this is a test
  | #+end_src
  | 
  | 
  | ** DESC2 File
  | :PROPERTIES:
  | :tangle:   ./DESC2
  | :shebang:  
  | :padline: no
  | :no-expand: TRUE
  | :comments: yes
  | :END:
  | #+begin_src R
  |   this is a test
  | #+end_src
  `

  I get the following tangled files:

  DESCRIPTION:

  ,
  | Package: asmDrak
  | 
  | ;; Local Variables:
  | ;; org-babel-tangled-file: t
  | ;; buffer-read-only: t
  | ;; End:
  `

  which has the wrong comment character (should have #)

  NAMESPACE:

  ,
  | this is a test
  | 
  | ## Local Variables:
  | ## org-babel-tangled-file: t
  | ## buffer-read-only: t
  | ## End:
  `

  which has the correct comment characters, and 

  DESC2

  ,
  | ## [[file:~/tmp/tangle.org::*DESC2%20File][DESC2\ File:1]]
  | this is a test
  | ## DESC2\ File:1 ends here
  | 
  | ;; Local Variables:
  | ;; org-babel-tangled-file: t
  | ;; buffer-read-only: t
  | ;; End:
  `

  which has the correct comment characters for the comments, but the wrong
  ones for the file local variables.

  I use the following in my .emacs file to set the post-tangle-hook to add
  the local file variables:

  ,
  |   (defvar org-babel-tangled-file nil
  | If non-nill, current file was tangled with org-babel-tangle)
  |   (put 'org-babel-tangled-file 'safe-local-variable 'booleanp)
  | 
  |   (defun org-babel-mark-file-as-tangled ()
  | (add-file-local-variable 'org-babel-tangled-file t)
  | (add-file-local-variable 'buffer-read-only t)
  | ;; (add-file-local-variable 'eval: (auto-revert-mode))
  | (basic-save-buffer))
  |   
  |   (add-hook 'org-babel-post-tangle-hook 'org-babel-mark-file-as-tangled)
  `

  I assume this is a bug somewhere?

  Org-mode version 8.0.3 (release_8.0.3-211-gf16b53 @
  /home/rkrug/.emacs.d/org-mode/lisp/)

  GNU Emacs 24.3.1 (i686-pc-linux-gnu, GTK+ Version 3.6.4)
   of 2013-04-14 on actinium, modified by Debian

  Cheers,

  Rainer



Re: [O] Wrong comment character when adding file local variables?

2013-06-07 Thread Rainer M Krug
On Friday, June 7, 2013, Vitalie Spinu wrote:


 All your examples are placed in fundamental mode. The comments are
 treated by org and thus are correct, local variables are inserted
 according to the major mode.

 The question is why - all .R files are automatically in r mode when I open
them and all other R files tangle fine.


 I don't how this could be easily fixed on org side, but you can solve it
 straightforwardly with:

(add-to-list 'auto-mode-alist (cons NAME\\|DESC 'R-mode))


Ok - I'check it out on Monday.

Cheers and have a nice weekend,

Rainer


  Vitalie

   Rainer M Krug rai...@krugs.de javascript:;
   on Fri, 07 Jun 2013 15:12:58 +0200 wrote:

   Hi

   when tangling the following file

   ,
   | * Package Files
   | ** DESCRIPTION File
   | :PROPERTIES:
   | :tangle:   ./DESCRIPTION
   | :shebang:
   | :padline: no
   | :no-expand: TRUE
   | :comments: no
   | :END:
   | #+begin_src R
   |   Package: asmDrak
   | #+end_src
   |
   | ** NAMESPACE File
   | :PROPERTIES:
   | :tangle:   ./NAMESPACE
   | :shebang:
   | :padline: no
   | :no-expand: TRUE
   | :comments: no
   | :END:
   | #+begin_src R
   |  this is a test
   | #+end_src
   |
   |
   | ** DESC2 File
   | :PROPERTIES:
   | :tangle:   ./DESC2
   | :shebang:
   | :padline: no
   | :no-expand: TRUE
   | :comments: yes
   | :END:
   | #+begin_src R
   |   this is a test
   | #+end_src
   `

   I get the following tangled files:

   DESCRIPTION:

   ,
   | Package: asmDrak
   |
   | ;; Local Variables:
   | ;; org-babel-tangled-file: t
   | ;; buffer-read-only: t
   | ;; End:
   `

   which has the wrong comment character (should have #)

   NAMESPACE:

   ,
   | this is a test
   |
   | ## Local Variables:
   | ## org-babel-tangled-file: t
   | ## buffer-read-only: t
   | ## End:
   `

   which has the correct comment characters, and

   DESC2

   ,
   | ## [[file:~/tmp/tangle.org::*DESC2%20File][DESC2\ File:1]]
   | this is a test
   | ## DESC2\ File:1 ends here
   |
   | ;; Local Variables:
   | ;; org-babel-tangled-file: t
   | ;; buffer-read-only: t
   | ;; End:
   `

   which has the correct comment characters for the comments, but the wrong
   ones for the file local variables.

   I use the following in my .emacs file to set the post-tangle-hook to add
   the local file variables:

   ,
   |   (defvar org-babel-tangled-file nil
   | If non-nill, current file was tangled with org-babel-tangle)
   |   (put 'org-babel-tangled-file 'safe-local-variable 'booleanp)
   |
   |   (defun org-babel-mark-file-as-tangled ()
   | (add-file-local-variable 'org-babel-tangled-file t)
   | (add-file-local-variable 'buffer-read-only t)
   | ;; (add-file-local-variable 'eval: (auto-revert-mode))
   | (basic-save-buffer))
   |
   |   (add-hook 'org-babel-post-tangle-hook
 'org-babel-mark-file-as-tangled)
   `

   I assume this is a bug somewhere?

   Org-mode version 8.0.3 (release_8.0.3-211-gf16b53 @
   /home/rkrug/.emacs.d/org-mode/lisp/)

   GNU Emacs 24.3.1 (i686-pc-linux-gnu, GTK+ Version 3.6.4)
of 2013-04-14 on actinium, modified by Debian

   Cheers,

   Rainer



-- 
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
UCT), Dipl. Phys. (Germany)

Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa

Tel :   +33 - (0)9 53 10 27 44
Cell:   +33 - (0)6 85 62 59 98
Fax (F):   +33 - (0)9 58 10 27 44

Fax (D):+49 - (0)3 21 21 25 22 44

email:  rai...@krugs.de

Skype:  RMkrug


Re: [O] Wrong comment character when adding file local variables?

2013-06-07 Thread Vitalie Spinu
  Rainer M Krug r.m.k...@gmail.com
  on Fri, 7 Jun 2013 17:40:53 +0200 wrote:

  On Friday, June 7, 2013, Vitalie Spinu wrote:
  All your examples are placed in fundamental mode. The comments are
  treated by org and thus are correct, local variables are inserted
  according to the major mode.

  The question is why - all .R files are automatically in r mode when I open 
  them
  and all other R files tangle fine.

Because they are placed automatically in R mode, your files are in
fundamental mode.

Vitalie