Re: [O] issue with babel R evaluate session vs external process
finally I found the problem: it was not at all related to org or babel, but due to a function in my ess-send-input-hook. sorry for bothering :) Thomas Alexander Gerds tagt...@sund.ku.dk writes: still a beginner, and maybe therefore, in my setup (release is: 7.8.03, emacs 23.2.1) the following occurs -org.snip--- * here it works: org-ctrl-c-ctrl-c and export #+begin_src R :results output :exports results foo=matrix(1:2) foo #+end_src #+RESULTS: : [,1] : [1,]1 : [2,]2 * here it does not: #+begin_src R :results output :exports results :session *R* foo=matrix(3:8) foo #+end_src the buffer *R* shows this: 'org_babel_R_eoe' [1] org_babel_R_eoe org.snap-- some debugging revealed this: ELISP (org-babel-R-evaluate-session *R* foo=matrix(1:2)\nfoo output '(output replace) nil nil) *** Eval error *** ELISP (org-babel-R-evaluate-external-process foo=matrix(1:2)\nfoo output '(output replace) nil nil) [,1]\n[1,]1\n[2,]2\n but strange-enough when I try to edebug org-babel-R-evaluate-session, I get an error: Symbol's value as variable is void: edebug-after can someone explain this? thanks! tomy -- Thomas A. Gerds -- Assoc. Prof. Department of Biostatistics University of Copenhagen, Øster Farimagsgade 5, 1014 Copenhagen, Denmark Office: CSS-15.2.07 (Gamle Kommunehospital) tel: 35327914 (sec: 35327901)
Re: [O] issue with babel R evaluate session vs external process
When executing your example below on my system both code blocks work as shown below. #+begin_src R :results output :exports results foo=matrix(1:2) foo #+end_src #+RESULTS: : [,1] : [1,]1 : [2,]2 #+begin_src R :results output :exports results :session *R* foo=matrix(3:8) foo #+end_src #+RESULTS: : [,1] : [1,]3 : [2,]4 : [3,]5 : [4,]6 : [5,]7 : [6,]8 If you are not using the latest version of Org-mode (from git) I would suggesting updating to the Org-mode git HEAD which should hopefully fix this issue. Thomas Alexander Gerds tagt...@sund.ku.dk writes: still a beginner, and maybe therefore, in my setup (release is: 7.8.03, emacs 23.2.1) the following occurs -org.snip--- * here it works: org-ctrl-c-ctrl-c and export #+begin_src R :results output :exports results foo=matrix(1:2) foo #+end_src #+RESULTS: : [,1] : [1,]1 : [2,]2 * here it does not: #+begin_src R :results output :exports results :session *R* foo=matrix(3:8) foo #+end_src the buffer *R* shows this: 'org_babel_R_eoe' [1] org_babel_R_eoe org.snap-- some debugging revealed this: ELISP (org-babel-R-evaluate-session *R* foo=matrix(1:2)\nfoo ELISP output '(output replace) nil nil) *** Eval error *** ELISP (org-babel-R-evaluate-external-process foo=matrix(1:2)\nfoo ELISP output '(output replace) nil nil) [,1]\n[1,]1\n[2,]2\n but strange-enough when I try to edebug org-babel-R-evaluate-session, I get an error: Symbol's value as variable is void: edebug-after can someone explain this? thanks! tomy -- Eric Schulte http://cs.unm.edu/~eschulte/
[O] issue with babel R evaluate session vs external process
still a beginner, and maybe therefore, in my setup (release is: 7.8.03, emacs 23.2.1) the following occurs -org.snip--- * here it works: org-ctrl-c-ctrl-c and export #+begin_src R :results output :exports results foo=matrix(1:2) foo #+end_src #+RESULTS: : [,1] : [1,]1 : [2,]2 * here it does not: #+begin_src R :results output :exports results :session *R* foo=matrix(3:8) foo #+end_src the buffer *R* shows this: 'org_babel_R_eoe' [1] org_babel_R_eoe org.snap-- some debugging revealed this: ELISP (org-babel-R-evaluate-session *R* foo=matrix(1:2)\nfoo 'output '(output replace) nil nil) *** Eval error *** ELISP (org-babel-R-evaluate-external-process foo=matrix(1:2)\nfoo 'output '(output replace) nil nil) [,1]\n[1,]1\n[2,]2\n but strange-enough when I try to edebug org-babel-R-evaluate-session, I get an error: Symbol's value as variable is void: edebug-after can someone explain this? thanks! tomy -- sent from nil
