Hi,
On 2011-09-07, at 7:04 AM, a...@ebi.ac.uk wrote:
Regarding the oddity: having had a look, the Ubuntu people have
decided to put some libraries in different locations from
most other linux distributions. I've modified the script
which should now , at least, fix that problem. You can download it from:
http://www.ebi.ac.uk/~ajb/test/install-jemboss-server.sh
(you may need to chmod 755 it after download).
Ah, Linux distros... I tried the new script, with default choices, with a clean
d/l of EMBOSS and EMBASSY apps and I got this:
ajjava.c:122:31: fatal error: security/pam_appl.h: No such file or directory
compilation terminated.
make[3]: *** [ajjava.lo] Error 1
make[3]: Leaving directory `/opt/bio/sources/EMBOSS-6.4.0/ajax/core'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/opt/bio/sources/EMBOSS-6.4.0/ajax/core'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/opt/bio/sources/EMBOSS-6.4.0/ajax'
make: *** [all-recursive] Error 1
Let me guess:
% apt-get install libpam0g-dev
Right? Must be because compilation did work a-ok with the script after this
install.
Wrt crypt: the above script works for me using PAM authentication
(requires libpam0g-dev installation). I can't guarantee it'll
work with other authentication methods on Ubuntu yet, given
their library organisation, but feel free to test it and let me
know. Before you do that though, please send me your
jemboss/utils/install.record file (produced automatically after you ran
the installation script - edit it to replace any sensitive info
with 'x's first) so I can see what options you had chosen to
give before the compilation failed (in order to try to
reproduce the original failure). We do, however, recommend PAM
authentication for servers on those distributions that
support PAM.
I had selected shadow, which might explain this error. I actually never use
jemboss in a client-server setup but rather as a local standalone resource on
the server for the users to use locally via the Xfce4 GUI. BTW, the script is
not using axis2c yet? It only recognized axis-1_4.
Thanks for the help
Sylvain
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