Re: [ESS] Can't load libraries after upgrading to R 3.3.2

[Simon Bonner]

Note also that the most recent version of JAGS is 4.2.0 
(http://mcmc-jags.sourceforge.net/). It’s probably worth upgrading. JAGS is 
available via homebrew if you want an easy way to install it and keep it up to 
date.

Simon Bonner
Assistant Professor of Environmetrics/Director MMASc
Department of Statistical and Actuarial Sciences/Department of Biology
University of Western Ontario
 
Office: Western Science Centre rm 276
 
Email: sbonn...@uwo.ca | Telephone: 519-661-2111 x88205 | Fax: 519-661-3813
Twitter: @bonnerstatslab | Website: http://simon.bonners.ca/bonner-lab/wpblog/
 

On 2016-12-13, 6:42 PM, "ESS-help on behalf of ross.darn...@data61.csiro.au" 
 
wrote:

A quick google found this

https://martynplummer.wordpress.com/2014/09/08/jags-3-4-0-for-mavericks/

Ross

-Original Message-
From: ESS-help [mailto:ess-help-boun...@r-project.org] On Behalf Of Gonçalo 
Ferraz
Sent: Wednesday, 14 December 2016 2:58 AM
To: ess-help@r-project.org
Subject: [ESS] Can't load libraries after upgrading to R 3.3.2

Hi, 

I just upgraded R to version 3.3.2 on a Mac OS X system. I suspect 
something may have gone wrong with the installation (despite a ‘successfully 
installed’ message) because the R.App is nowhere to be found.
Nevertheless, I can open R in ESS, which how I always use it. The problem 
though, is I can’t install packages from the R command line within ESS. Here is 
a sample error message:

> install.packages("rjags")
--- Please select a CRAN mirror for use in this session --- trying URL 
'https://vps.fmvz.usp.br/CRAN/bin/macosx/mavericks/contrib/3.3/rjags_4-6.tgz' 
<https://vps.fmvz.usp.br/CRAN/bin/macosx/mavericks/contrib/3.3/rjags_4-6.tgz'>
Content type 'application/x-gzip' length 249529 bytes (243 KB) 
==
downloaded 243 KB

The downloaded binary packages are in

/var/folders/kf/zkk64rtj5197pzwq94qfls0wgn/T//RtmpuSb7P1/downloaded_packages
> library(rjags)
Loading required package: coda
Error : .onLoad failed in loadNamespace() for 'rjags', details:
 call: dyn.load(file, DLLpath = DLLpath, ...)
 error: unable to load shared object 
'/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so':
 
dlopen(/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so,
 10): Library not loaded: /usr/local/lib/libjags.4.dylib  Referenced from: 
/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so
 Reason: image not found
Error: package or namespace load failed for ‘rjags’

This happens with other packages as well. Does anyone know what may be 
going on?

Thank you,

Gonçalo
[[alternative HTML version deleted]]

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Re: [ESS] how to edit openbugs model file?

[Simon Bonner]

Hi Paul,

An easy way to do this is to rename your file as model.R. The syntax for BUGS 
is almost identical to the syntax for R, and BUGS doesn’t care what the model 
extension is. 

Wish I could say that I thought of that but kudos go to Matthew Schofield.

Cheers,

Simon

Simon Bonner
Assistant Professor of Environmetrics/Director MMASc
Department of Statistical and Actuarial Sciences/Department of Biology
University of Western Ontario
 
Office: Western Science Centre rm 276
 
Email: sbonn...@uwo.ca | Telephone: 519-661-2111 x88205 | Fax: 519-661-3813
Twitter: @bonnerstatslab | Website: http://simon.bonners.ca/bonner-lab/wpblog/
 

On 2016-12-02, 1:21 PM, "ESS-help on behalf of Paul Johnson" 
 wrote:

I have a student here who wants to edit an OpenBugs file named
"model.txt" in Emacs. I can't understand how to tell Emacs to use a
bugs mode so that things like M-; understand what to do.

If you have an idea, let me know.

We don't want to run the bugs code with an emacs session, we just want
to edit the bugs text model file and then we can run with R2OpenBugs
or something else.

-- 
Paul E. Johnson   http://pj.freefaculty.org
Director, Center for Research Methods and Data Analysis http://crmda.ku.edu

To write to me directly, please address me at pauljohn at ku.edu.

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