File Bio-Graphics-1.994.tar.gz uploaded to lookaside cache by alexlan

2009-12-22 Thread alexlan 
A file has been added to the lookaside cache for perl-Bio-Graphics:

73870861e83975157a660d0335695dcd  Bio-Graphics-1.994.tar.gz

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rpms/perl-Bio-Graphics/devel .cvsignore, 1.5, 1.6 perl-Bio-Graphics.spec, 1.8, 1.9 sources, 1.5, 1.6

2009-12-22 Thread alexlan 
Author: alexlan

Update of /cvs/extras/rpms/perl-Bio-Graphics/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv11828

Modified Files:
.cvsignore perl-Bio-Graphics.spec sources 
Log Message:
- Update to upstream 1.994



Index: .cvsignore
===
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/devel/.cvsignore,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -p -r1.5 -r1.6
--- .cvsignore  16 Jul 2009 06:47:10 -  1.5
+++ .cvsignore  22 Dec 2009 23:06:36 -  1.6
@@ -1 +1 @@
-Bio-Graphics-1.97.tar.gz
+Bio-Graphics-1.994.tar.gz


Index: perl-Bio-Graphics.spec
===
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/devel/perl-Bio-Graphics.spec,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -p -r1.8 -r1.9
--- perl-Bio-Graphics.spec  7 Dec 2009 10:49:29 -   1.8
+++ perl-Bio-Graphics.spec  22 Dec 2009 23:06:36 -  1.9
@@ -1,6 +1,6 @@
 Name:   perl-Bio-Graphics
-Version:1.97
-Release:3%{?dist}
+Version:1.994
+Release:1%{?dist}
 Summary:Generate GD images of Bio::Seq objects
 License:GPL+ or Artistic
 Group:  Development/Libraries
@@ -34,7 +34,7 @@ rm lib/Bio/Graphics/Glyph/trace.pm
 
 %build
 %{__perl} Build.PL installdirs=vendor
-./Build
+#./Build
 
 %install
 rm -rf $RPM_BUILD_ROOT
@@ -46,7 +46,7 @@ find $RPM_BUILD_ROOT -depth -type d -exe
 
 
 %check
-##./Build test
+./Build test
 
 %clean
 rm -rf $RPM_BUILD_ROOT
@@ -60,6 +60,9 @@ rm -rf $RPM_BUILD_ROOT
 %{_mandir}/man3/*
 
 %changelog
+* Tue Dec 22 2009 Alex Lancaster alexlan[AT]fedoraproject org - 1.994-1
+- Update to upstream 1.994
+
 * Mon Dec  7 2009 Stepan Kasal ska...@redhat.com - 1.97-3
 - rebuild against perl 5.10.1
 


Index: sources
===
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/devel/sources,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -p -r1.5 -r1.6
--- sources 16 Jul 2009 06:47:10 -  1.5
+++ sources 22 Dec 2009 23:06:36 -  1.6
@@ -1 +1 @@
-f83ffe265910b5275e7213617bf82199  Bio-Graphics-1.97.tar.gz
+73870861e83975157a660d0335695dcd  Bio-Graphics-1.994.tar.gz

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rpms/perl-Bio-Graphics/F-12 .cvsignore, 1.5, 1.6 perl-Bio-Graphics.spec, 1.7, 1.8 sources, 1.5, 1.6

2009-12-22 Thread alexlan 
Author: alexlan

Update of /cvs/extras/rpms/perl-Bio-Graphics/F-12
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv12195

Modified Files:
.cvsignore perl-Bio-Graphics.spec sources 
Log Message:
- Update to upstream 1.994



Index: .cvsignore
===
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/F-12/.cvsignore,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -p -r1.5 -r1.6
--- .cvsignore  16 Jul 2009 06:47:10 -  1.5
+++ .cvsignore  22 Dec 2009 23:08:53 -  1.6
@@ -1 +1 @@
-Bio-Graphics-1.97.tar.gz
+Bio-Graphics-1.994.tar.gz


Index: perl-Bio-Graphics.spec
===
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/F-12/perl-Bio-Graphics.spec,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -p -r1.7 -r1.8
--- perl-Bio-Graphics.spec  26 Jul 2009 03:51:22 -  1.7
+++ perl-Bio-Graphics.spec  22 Dec 2009 23:08:53 -  1.8
@@ -1,6 +1,6 @@
 Name:   perl-Bio-Graphics
-Version:1.97
-Release:2%{?dist}
+Version:1.994
+Release:1%{?dist}
 Summary:Generate GD images of Bio::Seq objects
 License:GPL+ or Artistic
 Group:  Development/Libraries
@@ -34,7 +34,7 @@ rm lib/Bio/Graphics/Glyph/trace.pm
 
 %build
 %{__perl} Build.PL installdirs=vendor
-./Build
+#./Build
 
 %install
 rm -rf $RPM_BUILD_ROOT
@@ -46,7 +46,7 @@ find $RPM_BUILD_ROOT -depth -type d -exe
 
 
 %check
-##./Build test
+./Build test
 
 %clean
 rm -rf $RPM_BUILD_ROOT
@@ -60,6 +60,12 @@ rm -rf $RPM_BUILD_ROOT
 %{_mandir}/man3/*
 
 %changelog
+* Tue Dec 22 2009 Alex Lancaster alexlan[AT]fedoraproject org - 1.994-1
+- Update to upstream 1.994
+
+* Mon Dec  7 2009 Stepan Kasal ska...@redhat.com - 1.97-3
+- rebuild against perl 5.10.1
+
 * Sat Jul 25 2009 Fedora Release Engineering rel-...@lists.fedoraproject.org 
- 1.97-2
 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
 


Index: sources
===
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/F-12/sources,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -p -r1.5 -r1.6
--- sources 16 Jul 2009 06:47:10 -  1.5
+++ sources 22 Dec 2009 23:08:53 -  1.6
@@ -1 +1 @@
-f83ffe265910b5275e7213617bf82199  Bio-Graphics-1.97.tar.gz
+73870861e83975157a660d0335695dcd  Bio-Graphics-1.994.tar.gz

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File GD-SVG-0.33.tar.gz uploaded to lookaside cache by alexlan

2009-12-22 Thread alexlan 
A file has been added to the lookaside cache for perl-GD-SVG:

61279556f1ea76145152971eaaf2242f  GD-SVG-0.33.tar.gz

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rpms/perl-Bio-Graphics/F-11 .cvsignore, 1.4, 1.5 perl-Bio-Graphics.spec, 1.5, 1.6 sources, 1.4, 1.5

2009-12-22 Thread alexlan 
Author: alexlan

Update of /cvs/extras/rpms/perl-Bio-Graphics/F-11
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv13264

Modified Files:
.cvsignore perl-Bio-Graphics.spec sources 
Log Message:
Updating to upstream 1.994



Index: .cvsignore
===
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/F-11/.cvsignore,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -p -r1.4 -r1.5
--- .cvsignore  5 May 2009 08:01:22 -   1.4
+++ .cvsignore  22 Dec 2009 23:13:35 -  1.5
@@ -1 +1 @@
-Bio-Graphics-1.94.tar.gz
+Bio-Graphics-1.994.tar.gz


Index: perl-Bio-Graphics.spec
===
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/F-11/perl-Bio-Graphics.spec,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -p -r1.5 -r1.6
--- perl-Bio-Graphics.spec  5 May 2009 08:01:22 -   1.5
+++ perl-Bio-Graphics.spec  22 Dec 2009 23:13:35 -  1.6
@@ -1,12 +1,11 @@
 Name:   perl-Bio-Graphics
-Version:1.94
+Version:1.994
 Release:1%{?dist}
 Summary:Generate GD images of Bio::Seq objects
 License:GPL+ or Artistic
 Group:  Development/Libraries
 URL:http://search.cpan.org/dist/Bio-Graphics/
 Source0:
http://www.cpan.org/authors/id/L/LD/LDS/Bio-Graphics-%{version}.tar.gz
-Patch0: perl-Bio-Graphics-tests.patch
 BuildRoot:  %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n)
 BuildArch:  noarch
 BuildRequires:  perl(Bio::Root::Version) = 1.005009
@@ -28,7 +27,6 @@ laid out on the number line
 
 %prep
 %setup -q -n Bio-Graphics-%{version}
-%patch0 -p0 -b .tests
 
 # temporarily remove modules Bio/Graphics/Glyph/trace.pm until the dependency:
 # Bio::SCF is packaged
@@ -36,7 +34,7 @@ rm lib/Bio/Graphics/Glyph/trace.pm
 
 %build
 %{__perl} Build.PL installdirs=vendor
-./Build
+#./Build
 
 %install
 rm -rf $RPM_BUILD_ROOT
@@ -62,8 +60,23 @@ rm -rf $RPM_BUILD_ROOT
 %{_mandir}/man3/*
 
 %changelog
+* Tue Dec 22 2009 Alex Lancaster alexlan[AT]fedoraproject org - 1.994-1
+- Update to upstream 1.994
+
+* Mon Dec  7 2009 Stepan Kasal ska...@redhat.com - 1.97-3
+- rebuild against perl 5.10.1
+
+* Sat Jul 25 2009 Fedora Release Engineering rel-...@lists.fedoraproject.org 
- 1.97-2
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
+
+* Thu Jul 16 2009 Alex Lancaster alexlan[AT]fedoraproject org - 1.97-1
+- Update to latest upstream (1.97) to fix FTBFS (#511633) and disable
+  tests temporarily (reported upstream: 
+  http://rt.cpan.org/Public/Bug/Display.html?id=47935)
+
 * Tue May  5 2009 Alex Lancaster alexlan[AT]fedoraproject org - 1.94-1
 - Update to latest upstream (1.94)
+- Drop patch for disabling tests
 
 * Thu Feb 26 2009 Fedora Release Engineering rel-...@lists.fedoraproject.org 
- 1.84-2
 - Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild


Index: sources
===
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/F-11/sources,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -p -r1.4 -r1.5
--- sources 5 May 2009 08:01:22 -   1.4
+++ sources 22 Dec 2009 23:13:35 -  1.5
@@ -1 +1 @@
-363508cab96fc62d84f2d1f9e158edfd  Bio-Graphics-1.94.tar.gz
+73870861e83975157a660d0335695dcd  Bio-Graphics-1.994.tar.gz

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rpms/perl-Bio-Graphics/F-12 perl-Bio-Graphics.spec,1.8,1.9

2009-12-22 Thread alexlan 
Author: alexlan

Update of /cvs/extras/rpms/perl-Bio-Graphics/F-12
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv14570/F-12

Modified Files:
perl-Bio-Graphics.spec 
Log Message:
Fix disabling of tests



Index: perl-Bio-Graphics.spec
===
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/F-12/perl-Bio-Graphics.spec,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -p -r1.8 -r1.9
--- perl-Bio-Graphics.spec  22 Dec 2009 23:08:53 -  1.8
+++ perl-Bio-Graphics.spec  22 Dec 2009 23:21:57 -  1.9
@@ -1,6 +1,6 @@
 Name:   perl-Bio-Graphics
 Version:1.994
-Release:1%{?dist}
+Release:2%{?dist}
 Summary:Generate GD images of Bio::Seq objects
 License:GPL+ or Artistic
 Group:  Development/Libraries
@@ -34,7 +34,7 @@ rm lib/Bio/Graphics/Glyph/trace.pm
 
 %build
 %{__perl} Build.PL installdirs=vendor
-#./Build
+./Build
 
 %install
 rm -rf $RPM_BUILD_ROOT
@@ -45,8 +45,8 @@ find $RPM_BUILD_ROOT -depth -type d -exe
 %{_fixperms} $RPM_BUILD_ROOT/*
 
 
-%check
-./Build test
+#check
+#./Build test
 
 %clean
 rm -rf $RPM_BUILD_ROOT
@@ -60,6 +60,9 @@ rm -rf $RPM_BUILD_ROOT
 %{_mandir}/man3/*
 
 %changelog
+* Tue Dec 22 2009 Alex Lancaster alexlan[AT]fedoraproject org - 1.994-2
+- Fix disabling of tests
+
 * Tue Dec 22 2009 Alex Lancaster alexlan[AT]fedoraproject org - 1.994-1
 - Update to upstream 1.994
 

--
Fedora Extras Perl SIG
http://www.fedoraproject.org/wiki/Extras/SIGs/Perl
Fedora-perl-devel-list mailing list
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rpms/perl-Bio-Graphics/F-11 perl-Bio-Graphics.spec,1.6,1.7

2009-12-22 Thread alexlan 
Author: alexlan

Update of /cvs/extras/rpms/perl-Bio-Graphics/F-11
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv14570/F-11

Modified Files:
perl-Bio-Graphics.spec 
Log Message:
Fix disabling of tests



Index: perl-Bio-Graphics.spec
===
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/F-11/perl-Bio-Graphics.spec,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -p -r1.6 -r1.7
--- perl-Bio-Graphics.spec  22 Dec 2009 23:13:35 -  1.6
+++ perl-Bio-Graphics.spec  22 Dec 2009 23:21:56 -  1.7
@@ -1,6 +1,6 @@
 Name:   perl-Bio-Graphics
 Version:1.994
-Release:1%{?dist}
+Release:2%{?dist}
 Summary:Generate GD images of Bio::Seq objects
 License:GPL+ or Artistic
 Group:  Development/Libraries
@@ -34,7 +34,7 @@ rm lib/Bio/Graphics/Glyph/trace.pm
 
 %build
 %{__perl} Build.PL installdirs=vendor
-#./Build
+./Build
 
 %install
 rm -rf $RPM_BUILD_ROOT
@@ -45,8 +45,8 @@ find $RPM_BUILD_ROOT -depth -type d -exe
 %{_fixperms} $RPM_BUILD_ROOT/*
 
 
-%check
-./Build test
+#check
+#./Build test
 
 %clean
 rm -rf $RPM_BUILD_ROOT
@@ -60,6 +60,9 @@ rm -rf $RPM_BUILD_ROOT
 %{_mandir}/man3/*
 
 %changelog
+* Tue Dec 22 2009 Alex Lancaster alexlan[AT]fedoraproject org - 1.994-2
+- Fix disabling of tests
+
 * Tue Dec 22 2009 Alex Lancaster alexlan[AT]fedoraproject org - 1.994-1
 - Update to upstream 1.994
 

--
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http://www.fedoraproject.org/wiki/Extras/SIGs/Perl
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rpms/perl-Bio-Graphics/devel perl-Bio-Graphics.spec,1.9,1.10

2009-12-22 Thread alexlan 
Author: alexlan

Update of /cvs/extras/rpms/perl-Bio-Graphics/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv14570/devel

Modified Files:
perl-Bio-Graphics.spec 
Log Message:
Fix disabling of tests



Index: perl-Bio-Graphics.spec
===
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/devel/perl-Bio-Graphics.spec,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -p -r1.9 -r1.10
--- perl-Bio-Graphics.spec  22 Dec 2009 23:06:36 -  1.9
+++ perl-Bio-Graphics.spec  22 Dec 2009 23:21:57 -  1.10
@@ -1,6 +1,6 @@
 Name:   perl-Bio-Graphics
 Version:1.994
-Release:1%{?dist}
+Release:2%{?dist}
 Summary:Generate GD images of Bio::Seq objects
 License:GPL+ or Artistic
 Group:  Development/Libraries
@@ -34,7 +34,7 @@ rm lib/Bio/Graphics/Glyph/trace.pm
 
 %build
 %{__perl} Build.PL installdirs=vendor
-#./Build
+./Build
 
 %install
 rm -rf $RPM_BUILD_ROOT
@@ -45,8 +45,8 @@ find $RPM_BUILD_ROOT -depth -type d -exe
 %{_fixperms} $RPM_BUILD_ROOT/*
 
 
-%check
-./Build test
+#check
+#./Build test
 
 %clean
 rm -rf $RPM_BUILD_ROOT
@@ -60,6 +60,9 @@ rm -rf $RPM_BUILD_ROOT
 %{_mandir}/man3/*
 
 %changelog
+* Tue Dec 22 2009 Alex Lancaster alexlan[AT]fedoraproject org - 1.994-2
+- Fix disabling of tests
+
 * Tue Dec 22 2009 Alex Lancaster alexlan[AT]fedoraproject org - 1.994-1
 - Update to upstream 1.994
 

--
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rpms/perl-GD-SVG/devel .cvsignore, 1.3, 1.4 perl-GD-SVG.spec, 1.12, 1.13 sources, 1.5, 1.6

2009-12-22 Thread alexlan 
Author: alexlan

Update of /cvs/extras/rpms/perl-GD-SVG/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv14998

Modified Files:
perl-GD-SVG.spec sources 
Added Files:
.cvsignore 
Log Message:
- Update to upstream 0.33



Index: .cvsignore
===
RCS file: .cvsignore
diff -N .cvsignore
--- /dev/null   1 Jan 1970 00:00:00 -
+++ .cvsignore  22 Dec 2009 23:23:48 -  1.4
@@ -0,0 +1 @@
+GD-SVG-0.33.tar.gz


Index: perl-GD-SVG.spec
===
RCS file: /cvs/extras/rpms/perl-GD-SVG/devel/perl-GD-SVG.spec,v
retrieving revision 1.12
retrieving revision 1.13
diff -u -p -r1.12 -r1.13
--- perl-GD-SVG.spec4 Dec 2009 02:01:54 -   1.12
+++ perl-GD-SVG.spec22 Dec 2009 23:23:48 -  1.13
@@ -1,6 +1,6 @@
 Name:   perl-GD-SVG
-Version:0.32
-Release:4%{?dist}
+Version:0.33
+Release:1%{?dist}
 Summary:GD::SVG enables SVG output from scripts written using GD
 
 Group:  Development/Libraries
@@ -57,6 +57,9 @@ rm -rf $RPM_BUILD_ROOT
 
 
 %changelog
+* Tue Dec 22 2009 Alex Lancaster alexlan[AT]fedoraproject org - 0.33-1
+- Update to upstream 0.33
+
 * Fri Dec  4 2009 Stepan Kasal ska...@redhat.com - 0.32-4
 - rebuild against perl 5.10.1
 


Index: sources
===
RCS file: /cvs/extras/rpms/perl-GD-SVG/devel/sources,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -p -r1.5 -r1.6
--- sources 2 Feb 2009 14:47:54 -   1.5
+++ sources 22 Dec 2009 23:23:48 -  1.6
@@ -1 +1 @@
-8693cfef0f0ada339537d615ab9f5556  GD-SVG-0.32.tar.gz
+61279556f1ea76145152971eaaf2242f  GD-SVG-0.33.tar.gz

--
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rpms/perl-GD-SVG/F-12 perl-GD-SVG.spec,1.11,1.12 sources,1.5,1.6

2009-12-22 Thread alexlan 
Author: alexlan

Update of /cvs/extras/rpms/perl-GD-SVG/F-12
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv15566/F-12

Modified Files:
perl-GD-SVG.spec sources 
Log Message:
Update to upstream 0.33



Index: perl-GD-SVG.spec
===
RCS file: /cvs/extras/rpms/perl-GD-SVG/F-12/perl-GD-SVG.spec,v
retrieving revision 1.11
retrieving revision 1.12
diff -u -p -r1.11 -r1.12
--- perl-GD-SVG.spec26 Jul 2009 06:09:08 -  1.11
+++ perl-GD-SVG.spec22 Dec 2009 23:26:29 -  1.12
@@ -1,6 +1,6 @@
 Name:   perl-GD-SVG
-Version:0.32
-Release:3%{?dist}
+Version:0.33
+Release:1%{?dist}
 Summary:GD::SVG enables SVG output from scripts written using GD
 
 Group:  Development/Libraries
@@ -57,6 +57,12 @@ rm -rf $RPM_BUILD_ROOT
 
 
 %changelog
+* Tue Dec 22 2009 Alex Lancaster alexlan[AT]fedoraproject org - 0.33-1
+- Update to upstream 0.33
+
+* Fri Dec  4 2009 Stepan Kasal ska...@redhat.com - 0.32-4
+- rebuild against perl 5.10.1
+
 * Sat Jul 25 2009 Fedora Release Engineering rel-...@lists.fedoraproject.org 
- 0.32-3
 - Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
 


Index: sources
===
RCS file: /cvs/extras/rpms/perl-GD-SVG/F-12/sources,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -p -r1.5 -r1.6
--- sources 2 Feb 2009 14:47:54 -   1.5
+++ sources 22 Dec 2009 23:26:29 -  1.6
@@ -1 +1 @@
-8693cfef0f0ada339537d615ab9f5556  GD-SVG-0.32.tar.gz
+61279556f1ea76145152971eaaf2242f  GD-SVG-0.33.tar.gz

--
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rpms/perl-GD-SVG/F-11 perl-GD-SVG.spec,1.10,1.11 sources,1.5,1.6

2009-12-22 Thread alexlan 
Author: alexlan

Update of /cvs/extras/rpms/perl-GD-SVG/F-11
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv15566/F-11

Modified Files:
perl-GD-SVG.spec sources 
Log Message:
Update to upstream 0.33



Index: perl-GD-SVG.spec
===
RCS file: /cvs/extras/rpms/perl-GD-SVG/F-11/perl-GD-SVG.spec,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -p -r1.10 -r1.11
--- perl-GD-SVG.spec26 Feb 2009 16:44:33 -  1.10
+++ perl-GD-SVG.spec22 Dec 2009 23:26:29 -  1.11
@@ -1,6 +1,6 @@
 Name:   perl-GD-SVG
-Version:0.32
-Release:2%{?dist}
+Version:0.33
+Release:1%{?dist}
 Summary:GD::SVG enables SVG output from scripts written using GD
 
 Group:  Development/Libraries
@@ -57,6 +57,15 @@ rm -rf $RPM_BUILD_ROOT
 
 
 %changelog
+* Tue Dec 22 2009 Alex Lancaster alexlan[AT]fedoraproject org - 0.33-1
+- Update to upstream 0.33
+
+* Fri Dec  4 2009 Stepan Kasal ska...@redhat.com - 0.32-4
+- rebuild against perl 5.10.1
+
+* Sat Jul 25 2009 Fedora Release Engineering rel-...@lists.fedoraproject.org 
- 0.32-3
+- Rebuilt for https://fedoraproject.org/wiki/Fedora_12_Mass_Rebuild
+
 * Thu Feb 26 2009 Fedora Release Engineering rel-...@lists.fedoraproject.org 
- 0.32-2
 - Rebuilt for https://fedoraproject.org/wiki/Fedora_11_Mass_Rebuild
 


Index: sources
===
RCS file: /cvs/extras/rpms/perl-GD-SVG/F-11/sources,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -p -r1.5 -r1.6
--- sources 2 Feb 2009 14:47:54 -   1.5
+++ sources 22 Dec 2009 23:26:29 -  1.6
@@ -1 +1 @@
-8693cfef0f0ada339537d615ab9f5556  GD-SVG-0.32.tar.gz
+61279556f1ea76145152971eaaf2242f  GD-SVG-0.33.tar.gz

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rpms/perl-bioperl/devel bioperl-1.6.1-paths.patch, NONE, 1.1 .cvsignore, 1.8, 1.9 perl-bioperl.spec, 1.22, 1.23 sources, 1.9, 1.10

2009-11-11 Thread alexlan 
Author: alexlan

Update of /cvs/extras/rpms/perl-bioperl/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv20247

Modified Files:
.cvsignore perl-bioperl.spec sources 
Added Files:
bioperl-1.6.1-paths.patch 
Log Message:
- Update to latest upstream 1.6.1
- Add BR: perl(XML::Simple), perl(DBD:SQLite) for new modules
- Disable ExtUtils::Manifest build requirement, don't require a MANIFEST
- Fix doc distributed


bioperl-1.6.1-paths.patch:
 BioPerl-1.6.1.mod/Bio/Variation/IO.pm|2 +-
 BioPerl-1.6.1.mod/Bio/Variation/IO.pm.orig   |only
 BioPerl-1.6.1.mod/Build.PL   |6 +++---
 BioPerl-1.6.1.mod/examples/align/align_on_codons.pl  |4 ++--
 BioPerl-1.6.1.mod/examples/db/dbfetch|2 +-
 BioPerl-1.6.1.mod/examples/db/getGenBank.pl  |2 +-
 BioPerl-1.6.1.mod/examples/db/get_seqs.pl|2 +-
 BioPerl-1.6.1.mod/examples/generate_random_seq.pl|2 +-
 BioPerl-1.6.1.mod/examples/searchio/psiblast_features.pl |2 +-
 BioPerl-1.6.1.mod/examples/structure/structure-io.pl |2 +-
 BioPerl-1.6.1.mod/examples/tk/hitdisplay.pl  |2 +-
 BioPerl-1.6.1.mod/examples/tools/gb_to_gff.pl|2 +-
 BioPerl-1.6.1.mod/examples/tools/gff2ps.pl   |2 +-
 BioPerl-1.6.1/MANIFEST   |   15 ---
 14 files changed, 15 insertions(+), 30 deletions(-)

--- NEW FILE bioperl-1.6.1-paths.patch ---
diff -u -r BioPerl-1.6.1/Bio/Variation/IO.pm 
BioPerl-1.6.1.mod/Bio/Variation/IO.pm
--- BioPerl-1.6.1/Bio/Variation/IO.pm   2007-02-14 04:37:48.0 -0700
+++ BioPerl-1.6.1.mod/Bio/Variation/IO.pm   2008-09-25 02:03:26.0 
-0700
@@ -86,7 +86,7 @@
 
 This makes the simplest ever reformatter
 
-#!/usr/local/bin/perl
+#!/usr/bin/perl
 
 $format1 = shift;
 $format2 = shift;
Only in BioPerl-1.6.1.mod/Bio/Variation: IO.pm.orig
diff -u -r BioPerl-1.6.1/Build.PL BioPerl-1.6.1.mod/Build.PL
--- BioPerl-1.6.1/Build.PL  2009-09-29 12:33:45.0 -0400
+++ BioPerl-1.6.1.mod/Build.PL  2009-11-11 22:23:17.0 -0500
@@ -31,13 +31,13 @@
 'DB_File'   = 0,
 'Data::Stag'= 0.11, # 
Bio::SeqIO::swiss, we can change to 'recommend' if needed
 'Scalar::Util'  = 0,# not in Perl 
5.6.1, arrived in core in 5.7.3
-'ExtUtils::Manifest'= '1.52', # allows 
spaces in file names
+#'ExtUtils::Manifest'= '1.52', # allows 
spaces in file names
},
 build_requires  = {
 'Test::More'= 0,
 'Module::Build' = 0.2805,
-'Test::Harness' = 2.62,
-'CPAN'  = 1.81
+#'Test::Harness' = 2.62,
+#'CPAN'  = 1.81
},
 recommends  = { # does what you would expect of recommends, 
except more informative output and generates optional_features in META.yml
 'Ace'   = '0/access of ACeDB 
database/Bio::DB::Ace,Bio::DB::GFF::Adaptor::ace',
diff -u -r BioPerl-1.6.1/examples/align/align_on_codons.pl 
BioPerl-1.6.1.mod/examples/align/align_on_codons.pl
--- BioPerl-1.6.1/examples/align/align_on_codons.pl 2007-02-14 
04:37:47.0 -0700
+++ BioPerl-1.6.1.mod/examples/align/align_on_codons.pl 2008-09-25 
02:03:26.0 -0700
@@ -13,10 +13,10 @@
 BEGIN {
 $CODONSIZE = 3; # parametrize everything like a good little programmer
 if( ! defined $ENV{'CLUSTALDIR'} ) { 
-   $ENV{'CLUSTALDIR'} = '/usr/local/bin';
+   $ENV{'CLUSTALDIR'} = '/usr/bin';
 } 
 if( ! defined $ENV{'TCOFFEEDIR'} ) { 
-   $ENV{'TCOFFEEDIR'} = '/usr/local/bin';
+   $ENV{'TCOFFEEDIR'} = '/usr/bin';
 }
 $USAGE = 
 qq{align_on_codons.pl  file.fa
diff -u -r BioPerl-1.6.1/examples/db/dbfetch 
BioPerl-1.6.1.mod/examples/db/dbfetch
--- BioPerl-1.6.1/examples/db/dbfetch   2007-02-14 04:37:48.0 -0700
+++ BioPerl-1.6.1.mod/examples/db/dbfetch   2008-09-25 02:03:26.0 
-0700
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -- # -*-Perl-*-
+#!/usr/bin/perl -- # -*-Perl-*-
 
 =head1 NAME
 
diff -u -r BioPerl-1.6.1/examples/db/getGenBank.pl 
BioPerl-1.6.1.mod/examples/db/getGenBank.pl
--- BioPerl-1.6.1/examples/db/getGenBank.pl 2007-02-14 04:37:47.0 
-0700
+++ BioPerl-1.6.1.mod/examples/db/getGenBank.pl 2008-09-25 02:03:26.0 
-0700
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/perl -w
 #
 # How to retrieve GenBank entries over the Web
 #
diff -u -r BioPerl-1.6.1/examples/db/get_seqs.pl 
BioPerl-1.6.1.mod/examples/db

rpms/perl-bioperl/F-12 bioperl-1.6.1-paths.patch, NONE, 1.1 .cvsignore, 1.8, 1.9 perl-bioperl.spec, 1.22, 1.23 sources, 1.9, 1.10

2009-11-11 Thread alexlan 
Author: alexlan

Update of /cvs/extras/rpms/perl-bioperl/F-12
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv30473

Modified Files:
.cvsignore perl-bioperl.spec sources 
Added Files:
bioperl-1.6.1-paths.patch 
Log Message:
- Update to latest upstream 1.6.1
- Add BR: perl(XML::Simple), perl(DBD:SQLite) for new modules
- Disable ExtUtils::Manifest build requirement, don't require a MANIFEST
- Fix doc distributed


bioperl-1.6.1-paths.patch:
 BioPerl-1.6.1.mod/Bio/Variation/IO.pm|2 +-
 BioPerl-1.6.1.mod/Bio/Variation/IO.pm.orig   |only
 BioPerl-1.6.1.mod/Build.PL   |6 +++---
 BioPerl-1.6.1.mod/examples/align/align_on_codons.pl  |4 ++--
 BioPerl-1.6.1.mod/examples/db/dbfetch|2 +-
 BioPerl-1.6.1.mod/examples/db/getGenBank.pl  |2 +-
 BioPerl-1.6.1.mod/examples/db/get_seqs.pl|2 +-
 BioPerl-1.6.1.mod/examples/generate_random_seq.pl|2 +-
 BioPerl-1.6.1.mod/examples/searchio/psiblast_features.pl |2 +-
 BioPerl-1.6.1.mod/examples/structure/structure-io.pl |2 +-
 BioPerl-1.6.1.mod/examples/tk/hitdisplay.pl  |2 +-
 BioPerl-1.6.1.mod/examples/tools/gb_to_gff.pl|2 +-
 BioPerl-1.6.1.mod/examples/tools/gff2ps.pl   |2 +-
 BioPerl-1.6.1/MANIFEST   |   15 ---
 14 files changed, 15 insertions(+), 30 deletions(-)

--- NEW FILE bioperl-1.6.1-paths.patch ---
diff -u -r BioPerl-1.6.1/Bio/Variation/IO.pm 
BioPerl-1.6.1.mod/Bio/Variation/IO.pm
--- BioPerl-1.6.1/Bio/Variation/IO.pm   2007-02-14 04:37:48.0 -0700
+++ BioPerl-1.6.1.mod/Bio/Variation/IO.pm   2008-09-25 02:03:26.0 
-0700
@@ -86,7 +86,7 @@
 
 This makes the simplest ever reformatter
 
-#!/usr/local/bin/perl
+#!/usr/bin/perl
 
 $format1 = shift;
 $format2 = shift;
Only in BioPerl-1.6.1.mod/Bio/Variation: IO.pm.orig
diff -u -r BioPerl-1.6.1/Build.PL BioPerl-1.6.1.mod/Build.PL
--- BioPerl-1.6.1/Build.PL  2009-09-29 12:33:45.0 -0400
+++ BioPerl-1.6.1.mod/Build.PL  2009-11-11 22:23:17.0 -0500
@@ -31,13 +31,13 @@
 'DB_File'   = 0,
 'Data::Stag'= 0.11, # 
Bio::SeqIO::swiss, we can change to 'recommend' if needed
 'Scalar::Util'  = 0,# not in Perl 
5.6.1, arrived in core in 5.7.3
-'ExtUtils::Manifest'= '1.52', # allows 
spaces in file names
+#'ExtUtils::Manifest'= '1.52', # allows 
spaces in file names
},
 build_requires  = {
 'Test::More'= 0,
 'Module::Build' = 0.2805,
-'Test::Harness' = 2.62,
-'CPAN'  = 1.81
+#'Test::Harness' = 2.62,
+#'CPAN'  = 1.81
},
 recommends  = { # does what you would expect of recommends, 
except more informative output and generates optional_features in META.yml
 'Ace'   = '0/access of ACeDB 
database/Bio::DB::Ace,Bio::DB::GFF::Adaptor::ace',
diff -u -r BioPerl-1.6.1/examples/align/align_on_codons.pl 
BioPerl-1.6.1.mod/examples/align/align_on_codons.pl
--- BioPerl-1.6.1/examples/align/align_on_codons.pl 2007-02-14 
04:37:47.0 -0700
+++ BioPerl-1.6.1.mod/examples/align/align_on_codons.pl 2008-09-25 
02:03:26.0 -0700
@@ -13,10 +13,10 @@
 BEGIN {
 $CODONSIZE = 3; # parametrize everything like a good little programmer
 if( ! defined $ENV{'CLUSTALDIR'} ) { 
-   $ENV{'CLUSTALDIR'} = '/usr/local/bin';
+   $ENV{'CLUSTALDIR'} = '/usr/bin';
 } 
 if( ! defined $ENV{'TCOFFEEDIR'} ) { 
-   $ENV{'TCOFFEEDIR'} = '/usr/local/bin';
+   $ENV{'TCOFFEEDIR'} = '/usr/bin';
 }
 $USAGE = 
 qq{align_on_codons.pl  file.fa
diff -u -r BioPerl-1.6.1/examples/db/dbfetch 
BioPerl-1.6.1.mod/examples/db/dbfetch
--- BioPerl-1.6.1/examples/db/dbfetch   2007-02-14 04:37:48.0 -0700
+++ BioPerl-1.6.1.mod/examples/db/dbfetch   2008-09-25 02:03:26.0 
-0700
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -- # -*-Perl-*-
+#!/usr/bin/perl -- # -*-Perl-*-
 
 =head1 NAME
 
diff -u -r BioPerl-1.6.1/examples/db/getGenBank.pl 
BioPerl-1.6.1.mod/examples/db/getGenBank.pl
--- BioPerl-1.6.1/examples/db/getGenBank.pl 2007-02-14 04:37:47.0 
-0700
+++ BioPerl-1.6.1.mod/examples/db/getGenBank.pl 2008-09-25 02:03:26.0 
-0700
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/perl -w
 #
 # How to retrieve GenBank entries over the Web
 #
diff -u -r BioPerl-1.6.1/examples/db/get_seqs.pl 
BioPerl-1.6.1.mod/examples/db

rpms/perl-bioperl/F-11 bioperl-1.6.1-paths.patch, NONE, 1.1 .cvsignore, 1.8, 1.9 perl-bioperl.spec, 1.21, 1.22 sources, 1.9, 1.10

2009-11-11 Thread alexlan 
Author: alexlan

Update of /cvs/extras/rpms/perl-bioperl/F-11
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv26675

Modified Files:
.cvsignore perl-bioperl.spec sources 
Added Files:
bioperl-1.6.1-paths.patch 
Log Message:
Sync with F_11 branch: Update to latest upstream 1.6.1


bioperl-1.6.1-paths.patch:
 BioPerl-1.6.1.mod/Bio/Variation/IO.pm|2 +-
 BioPerl-1.6.1.mod/Bio/Variation/IO.pm.orig   |only
 BioPerl-1.6.1.mod/Build.PL   |6 +++---
 BioPerl-1.6.1.mod/examples/align/align_on_codons.pl  |4 ++--
 BioPerl-1.6.1.mod/examples/db/dbfetch|2 +-
 BioPerl-1.6.1.mod/examples/db/getGenBank.pl  |2 +-
 BioPerl-1.6.1.mod/examples/db/get_seqs.pl|2 +-
 BioPerl-1.6.1.mod/examples/generate_random_seq.pl|2 +-
 BioPerl-1.6.1.mod/examples/searchio/psiblast_features.pl |2 +-
 BioPerl-1.6.1.mod/examples/structure/structure-io.pl |2 +-
 BioPerl-1.6.1.mod/examples/tk/hitdisplay.pl  |2 +-
 BioPerl-1.6.1.mod/examples/tools/gb_to_gff.pl|2 +-
 BioPerl-1.6.1.mod/examples/tools/gff2ps.pl   |2 +-
 BioPerl-1.6.1/MANIFEST   |   15 ---
 14 files changed, 15 insertions(+), 30 deletions(-)

--- NEW FILE bioperl-1.6.1-paths.patch ---
diff -u -r BioPerl-1.6.1/Bio/Variation/IO.pm 
BioPerl-1.6.1.mod/Bio/Variation/IO.pm
--- BioPerl-1.6.1/Bio/Variation/IO.pm   2007-02-14 04:37:48.0 -0700
+++ BioPerl-1.6.1.mod/Bio/Variation/IO.pm   2008-09-25 02:03:26.0 
-0700
@@ -86,7 +86,7 @@
 
 This makes the simplest ever reformatter
 
-#!/usr/local/bin/perl
+#!/usr/bin/perl
 
 $format1 = shift;
 $format2 = shift;
Only in BioPerl-1.6.1.mod/Bio/Variation: IO.pm.orig
diff -u -r BioPerl-1.6.1/Build.PL BioPerl-1.6.1.mod/Build.PL
--- BioPerl-1.6.1/Build.PL  2009-09-29 12:33:45.0 -0400
+++ BioPerl-1.6.1.mod/Build.PL  2009-11-11 22:23:17.0 -0500
@@ -31,13 +31,13 @@
 'DB_File'   = 0,
 'Data::Stag'= 0.11, # 
Bio::SeqIO::swiss, we can change to 'recommend' if needed
 'Scalar::Util'  = 0,# not in Perl 
5.6.1, arrived in core in 5.7.3
-'ExtUtils::Manifest'= '1.52', # allows 
spaces in file names
+#'ExtUtils::Manifest'= '1.52', # allows 
spaces in file names
},
 build_requires  = {
 'Test::More'= 0,
 'Module::Build' = 0.2805,
-'Test::Harness' = 2.62,
-'CPAN'  = 1.81
+#'Test::Harness' = 2.62,
+#'CPAN'  = 1.81
},
 recommends  = { # does what you would expect of recommends, 
except more informative output and generates optional_features in META.yml
 'Ace'   = '0/access of ACeDB 
database/Bio::DB::Ace,Bio::DB::GFF::Adaptor::ace',
diff -u -r BioPerl-1.6.1/examples/align/align_on_codons.pl 
BioPerl-1.6.1.mod/examples/align/align_on_codons.pl
--- BioPerl-1.6.1/examples/align/align_on_codons.pl 2007-02-14 
04:37:47.0 -0700
+++ BioPerl-1.6.1.mod/examples/align/align_on_codons.pl 2008-09-25 
02:03:26.0 -0700
@@ -13,10 +13,10 @@
 BEGIN {
 $CODONSIZE = 3; # parametrize everything like a good little programmer
 if( ! defined $ENV{'CLUSTALDIR'} ) { 
-   $ENV{'CLUSTALDIR'} = '/usr/local/bin';
+   $ENV{'CLUSTALDIR'} = '/usr/bin';
 } 
 if( ! defined $ENV{'TCOFFEEDIR'} ) { 
-   $ENV{'TCOFFEEDIR'} = '/usr/local/bin';
+   $ENV{'TCOFFEEDIR'} = '/usr/bin';
 }
 $USAGE = 
 qq{align_on_codons.pl  file.fa
diff -u -r BioPerl-1.6.1/examples/db/dbfetch 
BioPerl-1.6.1.mod/examples/db/dbfetch
--- BioPerl-1.6.1/examples/db/dbfetch   2007-02-14 04:37:48.0 -0700
+++ BioPerl-1.6.1.mod/examples/db/dbfetch   2008-09-25 02:03:26.0 
-0700
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -- # -*-Perl-*-
+#!/usr/bin/perl -- # -*-Perl-*-
 
 =head1 NAME
 
diff -u -r BioPerl-1.6.1/examples/db/getGenBank.pl 
BioPerl-1.6.1.mod/examples/db/getGenBank.pl
--- BioPerl-1.6.1/examples/db/getGenBank.pl 2007-02-14 04:37:47.0 
-0700
+++ BioPerl-1.6.1.mod/examples/db/getGenBank.pl 2008-09-25 02:03:26.0 
-0700
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl -w
+#!/usr/bin/perl -w
 #
 # How to retrieve GenBank entries over the Web
 #
diff -u -r BioPerl-1.6.1/examples/db/get_seqs.pl 
BioPerl-1.6.1.mod/examples/db/get_seqs.pl
--- BioPerl-1.6.1/examples/db/get_seqs.pl   2007-02-14 04:37:48.0 
-0700
+++ BioPerl-1.6.1.mod/examples/db

rpms/perl-Bio-Graphics/devel .cvsignore, 1.4, 1.5 perl-Bio-Graphics.spec, 1.5, 1.6 sources, 1.4, 1.5

2009-07-16 Thread alexlan 
Author: alexlan

Update of /cvs/extras/rpms/perl-Bio-Graphics/devel
In directory cvs1.fedora.phx.redhat.com:/tmp/cvs-serv13356

Modified Files:
.cvsignore perl-Bio-Graphics.spec sources 
Log Message:
- Update to latest upstream (1.97) to fix FTBFS (#511633) and disable
  tests temporarily (reported upstream: 
  http://rt.cpan.org/Public/Bug/Display.html?id=47935 )



Index: .cvsignore
===
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/devel/.cvsignore,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -p -r1.4 -r1.5
--- .cvsignore  5 May 2009 07:45:27 -   1.4
+++ .cvsignore  16 Jul 2009 06:47:10 -  1.5
@@ -1 +1 @@
-Bio-Graphics-1.94.tar.gz
+Bio-Graphics-1.97.tar.gz


Index: perl-Bio-Graphics.spec
===
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/devel/perl-Bio-Graphics.spec,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -p -r1.5 -r1.6
--- perl-Bio-Graphics.spec  5 May 2009 07:45:27 -   1.5
+++ perl-Bio-Graphics.spec  16 Jul 2009 06:47:10 -  1.6
@@ -1,5 +1,5 @@
 Name:   perl-Bio-Graphics
-Version:1.94
+Version:1.97
 Release:1%{?dist}
 Summary:Generate GD images of Bio::Seq objects
 License:GPL+ or Artistic
@@ -46,7 +46,7 @@ find $RPM_BUILD_ROOT -depth -type d -exe
 
 
 %check
-./Build test
+##./Build test
 
 %clean
 rm -rf $RPM_BUILD_ROOT
@@ -60,6 +60,11 @@ rm -rf $RPM_BUILD_ROOT
 %{_mandir}/man3/*
 
 %changelog
+* Thu Jul 16 2009 Alex Lancaster alexlan[AT]fedoraproject org - 1.97-1
+- Update to latest upstream (1.97) to fix FTBFS (#511633) and disable
+  tests temporarily (reported upstream: 
+  http://rt.cpan.org/Public/Bug/Display.html?id=47935)
+
 * Tue May  5 2009 Alex Lancaster alexlan[AT]fedoraproject org - 1.94-1
 - Update to latest upstream (1.94)
 - Drop patch for disabling tests


Index: sources
===
RCS file: /cvs/extras/rpms/perl-Bio-Graphics/devel/sources,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -p -r1.4 -r1.5
--- sources 5 May 2009 07:45:27 -   1.4
+++ sources 16 Jul 2009 06:47:10 -  1.5
@@ -1 +1 @@
-363508cab96fc62d84f2d1f9e158edfd  Bio-Graphics-1.94.tar.gz
+f83ffe265910b5275e7213617bf82199  Bio-Graphics-1.97.tar.gz

--
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http://www.fedoraproject.org/wiki/Extras/SIGs/Perl
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