[Bug 510843] Review Request: samtools - Tools for nucleotide sequence alignments in the SAM format
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=510843 Rasmus Ory Nielsen r...@ron.dk changed: What|Removed |Added CC||albert.bogdanow...@gmail.co ||m --- Comment #9 from Rasmus Ory Nielsen r...@ron.dk 2009-11-20 04:14:09 EDT --- *** Bug 538420 has been marked as a duplicate of this bug. *** -- Configure bugmail: https://bugzilla.redhat.com/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are on the CC list for the bug. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 510843] Review Request: samtools - Tools for nucleotide sequence alignments in the SAM format
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=510843 Rasmus Ory Nielsen r...@ron.dk changed: What|Removed |Added Status|ASSIGNED|CLOSED Resolution||NEXTRELEASE -- Configure bugmail: https://bugzilla.redhat.com/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are on the CC list for the bug. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 510843] Review Request: samtools - Tools for nucleotide sequence alignments in the SAM format
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=510843 --- Comment #8 from Rasmus Ory Nielsen r...@ron.dk 2009-07-13 02:28:46 EDT --- Thanks. -- Configure bugmail: https://bugzilla.redhat.com/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are on the CC list for the bug. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 510843] Review Request: samtools - Tools for nucleotide sequence alignments in the SAM format
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=510843 Jason Tibbitts ti...@math.uh.edu changed: What|Removed |Added Flag|fedora-cvs? |fedora-cvs+ --- Comment #5 from Jason Tibbitts ti...@math.uh.edu 2009-07-12 12:58:27 EDT --- CVS done. -- Configure bugmail: https://bugzilla.redhat.com/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are on the CC list for the bug. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 510843] Review Request: samtools - Tools for nucleotide sequence alignments in the SAM format
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=510843 --- Comment #6 from Rasmus Ory Nielsen r...@ron.dk 2009-07-12 16:40:09 EDT --- Checked in and built on devel, F-10, F-11. Thanks for the review. I'm amazed by the speed you have reviewed my last two packages. This is my third package, and now I would like to get started with reviewing packages myself. Is it possible that you could supervise my first one or two reviews? -- Configure bugmail: https://bugzilla.redhat.com/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are on the CC list for the bug. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 510843] Review Request: samtools - Tools for nucleotide sequence alignments in the SAM format
Please do not reply directly to this email. All additional
comments should be made in the comments box of this bug.
https://bugzilla.redhat.com/show_bug.cgi?id=510843
Jason Tibbitts ti...@math.uh.edu changed:
What|Removed |Added
Status|NEW |ASSIGNED
AssignedTo|nob...@fedoraproject.org|ti...@math.uh.edu
Flag||fedora-review?
--- Comment #1 from Jason Tibbitts ti...@math.uh.edu 2009-07-11 11:28:39 EDT
---
Builds fine and rpmlint is silent.
The compiler is not called with the proper set of flags. You will need to find
some way to pass %{optflags} to the makefile. Sometimes setting CFLAGS does
it, but sometimes you have to patch the Makefile. At least -g is passed to the
compiler so the debuginfo package isn't broken.
I would suggest packaging the manpage as a manpage instead of leaving it with
the rest of the documentation.
Please consider using install -p to preserve the timestanps on the scripts you
install.
* source files match upstream. sha256sum:
54949e99009f8f4484609b136e46439ebaa54bc9760a35f10c714e169a36f9e3
samtools-0.1.5c.tar.bz2
* package meets naming and versioning guidelines.
* specfile is properly named, is cleanly written and uses macros consistently.
* summary is OK.
* description is OK.
* dist tag is present.
* build root is OK.
* license field matches the actual license.
* license is open source-compatible.
* license text included in package.
* latest version is being packaged.
* BuildRequires are proper.
X compiler flags are not correct.
* %clean is present.
* package builds in mock (rawhide, x86_64).
* package installs properly.
* debuginfo package looks complete.
* rpmlint is silent.
* final provides and requires are sane:
samtools = 0.1.5c-1.fc12
samtools(x86-64) = 0.1.5c-1.fc12
=
/usr/bin/perl
libncurses.so.5()(64bit)
libtinfo.so.5()(64bit)
libz.so.1()(64bit)
perl(Data::Dumper)
perl(Getopt::Std)
perl(strict)
perl(warnings)
* %check is not present; no test suite upstream. I've no idea how to test
this.
* no shared libraries are added to the regular linker search paths.
* owns the directories it creates.
* doesn't own any directories it shouldn't.
* no duplicates in %files.
* file permissions are appropriate.
* no generically named files
* code, not content.
* documentation is small, so no -doc subpackage is necessary.
* %docs are not necessary for the proper functioning of the package.
* no headers.
* no pkgconfig files.
* no static libraries.
* no libtool .la files.
The package review process needs reviewers! If you haven't done any package
reviews recently, please consider doing one.
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[Bug 510843] Review Request: samtools - Tools for nucleotide sequence alignments in the SAM format
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=510843 --- Comment #2 from Rasmus Ory Nielsen r...@ron.dk 2009-07-11 13:32:00 EDT --- Thank you for your quick response. Here's the updated files with all your recommendations: Spec URL: http://ron.fedorapeople.org/samtools.spec SRPM URL: http://ron.fedorapeople.org/samtools-0.1.5c-2.fc10.src.rpm Updated scratch build: http://koji.fedoraproject.org/koji/taskinfo?taskID=1467848 -- Configure bugmail: https://bugzilla.redhat.com/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are on the CC list for the bug. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 510843] Review Request: samtools - Tools for nucleotide sequence alignments in the SAM format
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=510843 Jason Tibbitts ti...@math.uh.edu changed: What|Removed |Added Flag|fedora-review? |fedora-review+ --- Comment #3 from Jason Tibbitts ti...@math.uh.edu 2009-07-11 14:48:23 EDT --- Looks good, thanks. APPROVED -- Configure bugmail: https://bugzilla.redhat.com/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are on the CC list for the bug. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
[Bug 510843] Review Request: samtools - Tools for nucleotide sequence alignments in the SAM format
Please do not reply directly to this email. All additional comments should be made in the comments box of this bug. https://bugzilla.redhat.com/show_bug.cgi?id=510843 Rasmus Ory Nielsen r...@ron.dk changed: What|Removed |Added Flag||fedora-cvs? --- Comment #4 from Rasmus Ory Nielsen r...@ron.dk 2009-07-11 17:01:29 EDT --- New Package CVS Request === Package Name: samtools Short Description: Tools for nucleotide sequence alignments in the SAM format Owners: ron Branches: F-10 F-11 -- Configure bugmail: https://bugzilla.redhat.com/userprefs.cgi?tab=email --- You are receiving this mail because: --- You are on the CC list for the bug. ___ Fedora-package-review mailing list Fedora-package-review@redhat.com http://www.redhat.com/mailman/listinfo/fedora-package-review
