Re: [Fink-beginners] phase compiling: fcgi-pm5124-0.74-1 failed

2014-11-28 Thread Alexander Hansen 

> On Nov 26, 2014, at 6:38 PM, Prabhjeet Basra 
>  wrote:
> 
> Hi
> 
> I am using: 
> Package manager version: 0.38.2
> Distribution version: selfupdate-rsync Wed Nov 26 20:33:40 2014, 10.9, x86_64
> Trees: local/main stable/main
> Xcode.app: 6.1​
> 
> And I'm trying to install BioPerl and I keep getting this error
> 
> 


> Generating FCGI.pm
> cp FCGI.pm blib/arch/FCGI.pm
> "/usr/bin/arch" -x86_64 perl5.12.4 -x86_64 perl5.12.4 "-Iblib/arch" 
> "-Iblib/lib" FCGI.XL FCGI.xs
> "/usr/bin/arch" -x86_64 perl5.12.4 -x86_64 perl5.12.4 "-Iblib/arch" 
> "-Iblib/lib" echo.PL echo.fpl
> "/usr/bin/arch" -x86_64 perl5.12.4 -x86_64 perl5.12.4 "-Iblib/arch" 
> "-Iblib/lib" remote.PL remote.fpl
> Can't open perl script "perl5.12.4": No such file or directory
> Can't open perl script "perl5.12.4": No such file or directory
> Can't open perl script "perl5.12.4": No such file or directory


> Failed: phase compiling: fcgi-pm5124-0.74-1 failed
> 
> Thanks
> Prabh

I don’t reproduce this.  On my own 10.9/Xcode 6.1 setup I get:

Generating FCGI.pm
cp FCGI.pm blib/arch/FCGI.pm
/usr/bin/arch -x86_64 perl5.12.4 "-Iblib/arch" "-Iblib/lib" FCGI.XL FCGI.xs


-- 
Alexander Hansen, Ph.D.
Fink User Liaison

--
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Re: [Fink-beginners] phase compiling: fcgi-pm5124-0.74-1 failed

2014-11-28 Thread Daniel Macks 
 On Nov 26, 2014, at 6:38 PM, Prabhjeet Basra 
 wrote:
>
>  I am using: 
>
>  Package manager version: 0.38.2
>  Distribution version: selfupdate-rsync Wed Nov 26 20:33:40 2014, 
> 10.9, x86_64
>  Trees: local/main stable/main
>  Xcode.app: 6.1​
>
>  And I'm trying to install BioPerl and I keep getting this error
>
>  
>
>   Generating FCGI.pm  cp FCGI.pm blib/arch/FCGI.pm
>  "/usr/bin/arch" -x86_64 perl5.12.4 -x86_64 perl5.12.4 "-Iblib/arch" 
> "-Iblib/lib" FCGI.XL FCGI.xs
>  "/usr/bin/arch" -x86_64 perl5.12.4 -x86_64 perl5.12.4 "-Iblib/arch" 
> "-Iblib/lib" echo.PL echo.fpl
>  "/usr/bin/arch" -x86_64 perl5.12.4 -x86_64 perl5.12.4 "-Iblib/arch" 
> "-Iblib/lib" remote.PL remote.fpl
>  Can't open perl script "perl5.12.4": No such file or directory
>  Can't open perl script "perl5.12.4": No such file or directory
>  Can't open perl script "perl5.12.4": No such file or directory

   >
>  
>
>   Failed: phase compiling: fcgi-pm5124-0.74-1 failed

  On Fri, 28 Nov 2014 10:15:29 -0800, Alexander Hansen 
 wrote:
  >
>  I don’t reproduce this.  On my own 10.9/Xcode 6.1 setup I get:
>
>  Generating FCGI.pm
>  cp FCGI.pm blib/arch/FCGI.pm
>  /usr/bin/arch -x86_64 perl5.12.4 "-Iblib/arch" "-Iblib/lib" FCGI.XL FCGI.xs

  Prabhjeet: was your computer previously running OS X 10.8 and then 
you updated it to 10.9?

  dan

  --
Daniel Macks
dma...@netspace.org



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Re: [Fink-beginners] phase compiling: fcgi-pm5124-0.74-1 failed

2014-11-28 Thread Jessilyn Dunn 
Hi,
I am having a similar problem installing Bioperl (I used $ fink install
bioperl-pm5162)

and received the error:

Failed: phase compiling: fcgi-pm5162-0.74-1 failed

(before this error, everything seemed to be running smoothly... see below)

New package:
dists/stable/main/binary-darwin-x86_64/web/libtidyp-dev_1.04-1_darwin-x86_64.deb

New package:
dists/stable/main/binary-darwin-x86_64/web/libtidyp-shlibs_1.04-1_darwin-x86_64.deb

New package:
dists/stable/main/binary-darwin-x86_64/web/tidyp_1.04-1_darwin-x86_64.deb

New package:
dists/stable/main/binary-darwin-x86_64/x11/xdg-base_0.8-2_darwin-x86_64.deb

For further details, my system information is:
Package manager version: 0.38.2
Distribution version: selfupdate-rsync Fri Nov 28 18:47:48 2014, 10.10,
x86_64
Trees: local/main stable/main stable/crypto
Xcode.app: 6.1
Xcode command-line tools: 6.1.0.0.1.1413057044
Max. Fink build jobs:  4

Thank you!
Jessilyn

On Fri, Nov 28, 2014 at 1:41 PM, Daniel Macks  wrote:

>  On Nov 26, 2014, at 6:38 PM, Prabhjeet Basra
>  wrote:
> >
> >  I am using:
> >
> >  Package manager version: 0.38.2
> >  Distribution version: selfupdate-rsync Wed Nov 26 20:33:40 2014,
> > 10.9, x86_64
> >  Trees: local/main stable/main
> >  Xcode.app: 6.1​
> >
> >  And I'm trying to install BioPerl and I keep getting this error
> >
> >  
> >
> >   Generating FCGI.pm  cp FCGI.pm blib/arch/FCGI.pm
> >  "/usr/bin/arch" -x86_64 perl5.12.4 -x86_64 perl5.12.4 "-Iblib/arch"
> > "-Iblib/lib" FCGI.XL FCGI.xs
> >  "/usr/bin/arch" -x86_64 perl5.12.4 -x86_64 perl5.12.4 "-Iblib/arch"
> > "-Iblib/lib" echo.PL echo.fpl
> >  "/usr/bin/arch" -x86_64 perl5.12.4 -x86_64 perl5.12.4 "-Iblib/arch"
> > "-Iblib/lib" remote.PL remote.fpl
> >  Can't open perl script "perl5.12.4": No such file or directory
> >  Can't open perl script "perl5.12.4": No such file or directory
> >  Can't open perl script "perl5.12.4": No such file or directory
>
>>
> >  
> >
> >   Failed: phase compiling: fcgi-pm5124-0.74-1 failed
>
>   On Fri, 28 Nov 2014 10:15:29 -0800, Alexander Hansen
>  wrote:
>   >
> >  I don’t reproduce this.  On my own 10.9/Xcode 6.1 setup I get:
> >
> >  Generating FCGI.pm
> >  cp FCGI.pm blib/arch/FCGI.pm
> >  /usr/bin/arch -x86_64 perl5.12.4 "-Iblib/arch" "-Iblib/lib" FCGI.XL
> FCGI.xs
>
>   Prabhjeet: was your computer previously running OS X 10.8 and then
> you updated it to 10.9?
>
>   dan
>
>   --
> Daniel Macks
> dma...@netspace.org
>
>
>
>
> --
> Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server
> from Actuate! Instantly Supercharge Your Business Reports and Dashboards
> with Interactivity, Sharing, Native Excel Exports, App Integration & more
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Re: [Fink-beginners] phase compiling: fcgi-pm5124-0.74-1 failed

2014-11-28 Thread Jessilyn Dunn 
Hi,
I am having a similar problem installing Bioperl (I used $ fink install
bioperl-pm5162)

and received the error:

Failed: phase compiling: fcgi-pm5162-0.74-1 failed

(before this error, everything seemed to be running smoothly... see below)

New package:
dists/stable/main/binary-darwin-x86_64/web/libtidyp-dev_1.04-1_darwin-x86_64.deb

New package:
dists/stable/main/binary-darwin-x86_64/web/libtidyp-shlibs_1.04-1_darwin-x86_64.deb

New package:
dists/stable/main/binary-darwin-x86_64/web/tidyp_1.04-1_darwin-x86_64.deb

New package:
dists/stable/main/binary-darwin-x86_64/x11/xdg-base_0.8-2_darwin-x86_64.deb

For further details, my system information is:
Package manager version: 0.38.2
Distribution version: selfupdate-rsync Fri Nov 28 18:47:48 2014, 10.10,
x86_64
Trees: local/main stable/main stable/crypto
Xcode.app: 6.1
Xcode command-line tools: 6.1.0.0.1.1413057044
Max. Fink build jobs:  4

Thank you!
Jessilyn

On Fri, Nov 28, 2014 at 1:41 PM, Daniel Macks  wrote:

>  On Nov 26, 2014, at 6:38 PM, Prabhjeet Basra
>  wrote:
> >
> >  I am using:
> >
> >  Package manager version: 0.38.2
> >  Distribution version: selfupdate-rsync Wed Nov 26 20:33:40 2014,
> > 10.9, x86_64
> >  Trees: local/main stable/main
> >  Xcode.app: 6.1​
> >
> >  And I'm trying to install BioPerl and I keep getting this error
> >
> >  
> >
> >   Generating FCGI.pm  cp FCGI.pm blib/arch/FCGI.pm
> >  "/usr/bin/arch" -x86_64 perl5.12.4 -x86_64 perl5.12.4 "-Iblib/arch"
> > "-Iblib/lib" FCGI.XL FCGI.xs
> >  "/usr/bin/arch" -x86_64 perl5.12.4 -x86_64 perl5.12.4 "-Iblib/arch"
> > "-Iblib/lib" echo.PL echo.fpl
> >  "/usr/bin/arch" -x86_64 perl5.12.4 -x86_64 perl5.12.4 "-Iblib/arch"
> > "-Iblib/lib" remote.PL remote.fpl
> >  Can't open perl script "perl5.12.4": No such file or directory
> >  Can't open perl script "perl5.12.4": No such file or directory
> >  Can't open perl script "perl5.12.4": No such file or directory
>
>>
> >  
> >
> >   Failed: phase compiling: fcgi-pm5124-0.74-1 failed
>
>   On Fri, 28 Nov 2014 10:15:29 -0800, Alexander Hansen
>  wrote:
>   >
> >  I don’t reproduce this.  On my own 10.9/Xcode 6.1 setup I get:
> >
> >  Generating FCGI.pm
> >  cp FCGI.pm blib/arch/FCGI.pm
> >  /usr/bin/arch -x86_64 perl5.12.4 "-Iblib/arch" "-Iblib/lib" FCGI.XL
> FCGI.xs
>
>   Prabhjeet: was your computer previously running OS X 10.8 and then
> you updated it to 10.9?
>
>   dan
>
>   --
> Daniel Macks
> dma...@netspace.org
>
>
>
>
> --
> Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server
> from Actuate! Instantly Supercharge Your Business Reports and Dashboards
> with Interactivity, Sharing, Native Excel Exports, App Integration & more
> Get technology previously reserved for billion-dollar corporations, FREE
>
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Re: [Fink-beginners] phase compiling: fcgi-pm5124-0.74-1 failed

2014-11-29 Thread Prabhjeet Basra 
?Hi


No the mac I'm using is an original Maverick and wasn't upgraded. I was unable 
to install it through fink but I did get it working by using this package.


http://www.blaststation.com/freestuff/en/howtoBioPerlMac.html?


Prabh





From: Alexander Hansen 
Sent: November-28-14 1:15 PM
To: Prabhjeet Basra
Cc: fink-beginners@lists.sourceforge.net; dma...@netspace.org
Subject: Re: [Fink-beginners] phase compiling: fcgi-pm5124-0.74-1 failed


On Nov 26, 2014, at 6:38 PM, Prabhjeet Basra 
mailto:prabhjeetba...@cmail.carleton.ca>> 
wrote:

Hi

I am using:
Package manager version: 0.38.2
Distribution version: selfupdate-rsync Wed Nov 26 20:33:40 2014, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 6.1?

And I'm trying to install BioPerl and I keep getting this error




Generating FCGI.pm
cp FCGI.pm blib/arch/FCGI.pm
"/usr/bin/arch" -x86_64 perl5.12.4 -x86_64 perl5.12.4 "-Iblib/arch" 
"-Iblib/lib" FCGI.XL FCGI.xs
"/usr/bin/arch" -x86_64 perl5.12.4 -x86_64 perl5.12.4 "-Iblib/arch" 
"-Iblib/lib" echo.PL echo.fpl
"/usr/bin/arch" -x86_64 perl5.12.4 -x86_64 perl5.12.4 "-Iblib/arch" 
"-Iblib/lib" remote.PL remote.fpl
Can't open perl script "perl5.12.4": No such file or directory
Can't open perl script "perl5.12.4": No such file or directory
Can't open perl script "perl5.12.4": No such file or directory


Failed: phase compiling: fcgi-pm5124-0.74-1 failed

Thanks
Prabh

I don't reproduce this.  On my own 10.9/Xcode 6.1 setup I get:

Generating FCGI.pm
cp FCGI.pm blib/arch/FCGI.pm
/usr/bin/arch -x86_64 perl5.12.4 "-Iblib/arch" "-Iblib/lib" FCGI.XL FCGI.xs


--
Alexander Hansen, Ph.D.
Fink User Liaison

--
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Re: [Fink-beginners] phase compiling: fcgi-pm5124-0.74-1 failed

2014-11-29 Thread Alexander Hansen 

> On Nov 28, 2014, at 9:53 PM, Jessilyn Dunn  wrote:
> 
> Hi,
> I am having a similar problem installing Bioperl (I used $ fink install 
> bioperl-pm5162)
>  
> and received the error:
> 
> Failed: phase compiling: fcgi-pm5162-0.74-1 failed
> 
> (before this error, everything seemed to be running smoothly... see below)
> New package: 
> dists/stable/main/binary-darwin-x86_64/web/libtidyp-dev_1.04-1_darwin-x86_64.deb
> New package: 
> dists/stable/main/binary-darwin-x86_64/web/libtidyp-shlibs_1.04-1_darwin-x86_64.deb
> New package: 
> dists/stable/main/binary-darwin-x86_64/web/tidyp_1.04-1_darwin-x86_64.deb
> New package: 
> dists/stable/main/binary-darwin-x86_64/x11/xdg-base_0.8-2_darwin-x86_64.deb
> 
> For further details, my system information is:
> Package manager version: 0.38.2
> Distribution version: selfupdate-rsync Fri Nov 28 18:47:48 2014, 10.10, x86_64
> Trees: local/main stable/main stable/crypto
> Xcode.app: 6.1
> Xcode command-line tools: 6.1.0.0.1.1413057044
> Max. Fink build jobs:  4
> 
> Thank you!
> Jessilyn
> 

I get the following (similar setup):

Generating FCGI.pm
2 warnings generated.
cp FCGI.pm blib/arch/FCGI.pm
"/usr/bin/arch" -x86_64 perl5.16.2 -x86_64 perl5.16.2 "-Iblib/arch" 
"-Iblib/lib" FCGI.XL FCGI.xs
"/usr/bin/arch" -x86_64 perl5.16.2 -x86_64 perl5.16.2 "-Iblib/arch" 
"-Iblib/lib" echo.PL echo.fpl
"/usr/bin/arch" -x86_64 perl5.16.2 -x86_64 perl5.16.2 "-Iblib/arch" 
"-Iblib/lib" remote.PL remote.fpl
Can't open perl script "perl5.16.2": No such file or directory
Can't open perl script "perl5.16.2": No such file or directory
Can't open perl script "perl5.16.2": No such file or directory
make: *** [remote.fpl] Error 2

This machine was updated from 10.9 to 10.10.  I see essentially the same error 
when attempting fcgi-pm5182.  Let me know if the configure log will help debug 
this.
-- 
Alexander Hansen, Ph.D.
Fink User Liaison

--
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Re: [Fink-beginners] phase compiling: fcgi-pm5124-0.74-1 failed

2014-11-29 Thread Alexander Hansen 

> On Nov 29, 2014, at 9:23 AM, Alexander Hansen  
> wrote:
> 
>> 
>> On Nov 28, 2014, at 9:53 PM, Jessilyn Dunn > > wrote:
>> 
>> Hi,
>> I am having a similar problem installing Bioperl (I used $ fink install 
>> bioperl-pm5162)
>>  
>> and received the error:
>> 
>> Failed: phase compiling: fcgi-pm5162-0.74-1 failed
>> 
>> (before this error, everything seemed to be running smoothly... see below)
>> New package: 
>> dists/stable/main/binary-darwin-x86_64/web/libtidyp-dev_1.04-1_darwin-x86_64.deb
>> New package: 
>> dists/stable/main/binary-darwin-x86_64/web/libtidyp-shlibs_1.04-1_darwin-x86_64.deb
>> New package: 
>> dists/stable/main/binary-darwin-x86_64/web/tidyp_1.04-1_darwin-x86_64.deb
>> New package: 
>> dists/stable/main/binary-darwin-x86_64/x11/xdg-base_0.8-2_darwin-x86_64.deb
>> 
>> For further details, my system information is:
>> Package manager version: 0.38.2
>> Distribution version: selfupdate-rsync Fri Nov 28 18:47:48 2014, 10.10, 
>> x86_64
>> Trees: local/main stable/main stable/crypto
>> Xcode.app: 6.1
>> Xcode command-line tools: 6.1.0.0.1.1413057044
>> Max. Fink build jobs:  4
>> 
>> Thank you!
>> Jessilyn
>> 
> 
> I get the following (similar setup):
> 
> Generating FCGI.pm
> 2 warnings generated.
> cp FCGI.pm blib/arch/FCGI.pm
> "/usr/bin/arch" -x86_64 perl5.16.2 -x86_64 perl5.16.2 "-Iblib/arch" 
> "-Iblib/lib" FCGI.XL FCGI.xs
> "/usr/bin/arch" -x86_64 perl5.16.2 -x86_64 perl5.16.2 "-Iblib/arch" 
> "-Iblib/lib" echo.PL echo.fpl
> "/usr/bin/arch" -x86_64 perl5.16.2 -x86_64 perl5.16.2 "-Iblib/arch" 
> "-Iblib/lib" remote.PL remote.fpl
> Can't open perl script "perl5.16.2": No such file or directory
> Can't open perl script "perl5.16.2": No such file or directory
> Can't open perl script "perl5.16.2": No such file or directory
> make: *** [remote.fpl] Error 2
> 
> This machine was updated from 10.9 to 10.10.  I see essentially the same 
> error when attempting fcgi-pm5182.  Let me know if the configure log will 
> help debug this.
> -- 
> Alexander Hansen, Ph.D.
> Fink User Liaison

We’ve found a workaround, which is to use “fink remove 
extutils-makemaker-pm5162” and then to build fcgi-pm5162.


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Re: [Fink-beginners] phase compiling: fcgi-pm5124-0.74-1 failed

2014-11-29 Thread Daniel Macks 
 On Sat, 29 Nov 2014 12:00:40 -0800, Alexander Hansen 
 wrote:
 >
>   On Nov 29, 2014, at 9:23 AM, Alexander Hansen 
>  wrote:
>
> On Nov 28, 2014, at 9:53 PM, Jessilyn Dunn  wrote:
>
> Hi,
> I am having a similar problem installing Bioperl (I used $ fink 
> install bioperl-pm5162) 
>  and received the error:
>
> Failed: phase compiling: fcgi-pm5162-0.74-1 failed
>
> (before this error, everything seemed to be running smoothly... see below)
>  New package: 
> dists/stable/main/binary-darwin-x86_64/web/libtidyp-dev_1.04-1_darwin-x86_64.deb
>  New package: 
> dists/stable/main/binary-darwin-x86_64/web/libtidyp-shlibs_1.04-1_darwin-x86_64.deb
>  New package: 
> dists/stable/main/binary-darwin-x86_64/web/tidyp_1.04-1_darwin-x86_64.deb
>  New package: 
> dists/stable/main/binary-darwin-x86_64/x11/xdg-base_0.8-2_darwin-x86_64.deb
>
> For further details, my system information is:
> Package manager version: 0.38.2
> Distribution version: selfupdate-rsync Fri Nov 28 18:47:48 2014, 
> 10.10, x86_64
> Trees: local/main stable/main stable/crypto
> Xcode.app: 6.1
> Xcode command-line tools: 6.1.0.0.1.1413057044
> Max. Fink build jobs:  4
>
>  Thank you!
>  Jessilyn
>
>  I get the following (similar setup):
>
>  Generating FCGI.pm
>  2 warnings generated. 
>  cp FCGI.pm blib/arch/FCGI.pm
>  "/usr/bin/arch" -x86_64 perl5.16.2 -x86_64 perl5.16.2 "-Iblib/arch" 
> "-Iblib/lib" FCGI.XL FCGI.xs
>  "/usr/bin/arch" -x86_64 perl5.16.2 -x86_64 perl5.16.2 "-Iblib/arch" 
> "-Iblib/lib" echo.PL echo.fpl
>  "/usr/bin/arch" -x86_64 perl5.16.2 -x86_64 perl5.16.2 "-Iblib/arch" 
> "-Iblib/lib" remote.PL remote.fpl
>  Can't open perl script "perl5.16.2": No such file or directory
>  Can't open perl script "perl5.16.2": No such file or directory
>  Can't open perl script "perl5.16.2": No such file or directory
>  make: *** [remote.fpl] Error 2
>
>This machine was updated from 10.9 to 10.10.  I see essentially 
> the same error when attempting fcgi-pm5182.  Let me know if the 
> configure log will help debug this. 
> -- 
> Alexander Hansen, Ph.D. 
> Fink User Liaison
>
>  We’ve found a workaround, which is to use “fink remove 
> extutils-makemaker-pm5162” and then to build fcgi-pm5162. 

  There's a new version (0.77) of the fcgi-pm* packages propagating 
through the selfupdate servers that might resolve the build problem. 

  dan

  --
Daniel Macks
dma...@netspace.org



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