[cvs] dists/10.7/stable/main/finkinfo/graphics pixman.info,1.10,1.11
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/graphics In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv23713 Modified Files: pixman.info Log Message: new version Index: pixman.info === RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/graphics/pixman.info,v retrieving revision 1.10 retrieving revision 1.11 diff -u -d -r1.10 -r1.11 --- pixman.info 9 Jul 2013 18:28:06 - 1.10 +++ pixman.info 22 Aug 2013 04:35:32 - 1.11 @@ -1,5 +1,5 @@ Package: pixman -Version: 0.30.0 +Version: 0.30.2 Revision: 1 Description: Pixel manipulation library License: BSD @@ -17,7 +17,7 @@ InfoTest: TestScript: make -k check || exit 2 Source: http://xorg.freedesktop.org/archive/individual/lib/pixman-%v.tar.bz2 -Source-MD5: 11b7e062e20ae40e49c2871dd9f82b0b +Source-MD5: 2d0588e20dc1308b29b2fca68dad9a9c ConfigureParams: --enable-dependency-tracking --disable-gtk --disable-static --disable-mmx SetCFLAGS: -O2 -g -fwrapv @@ -28,10 +28,10 @@ << InstallScript: make -j1 install DESTDIR="%d" -DocFiles: AUTHORS COPYING ChangeLog* INSTALL NEWS README +DocFiles: COPYING README SplitOff: << Package: %N-shlibs - DocFiles: COPYING + DocFiles: COPYING README Files: lib/libpixman-1.0*.dylib Shlibs: %p/lib/libpixman-1.0.dylib 31.0.0 %N-shlibs (>= 0.30.0-1) << -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/net alpine.info,1.9,1.10
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/net In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv14175 Modified Files: alpine.info Log Message: New upstream. Index: alpine.info === RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/net/alpine.info,v retrieving revision 1.9 retrieving revision 1.10 diff -u -d -r1.9 -r1.10 --- alpine.info 20 Aug 2013 20:56:45 - 1.9 +++ alpine.info 22 Aug 2013 01:01:06 - 1.10 @@ -1,14 +1,14 @@ Info2: << Package: alpine -Version: 2.10 -Revision: 5 -Source: http://patches.freeiz.com/%n/patches/%n-%v/%n-%v.clean.tar.lzma -Source-MD5: 727a6eaa577857b98ea74fac6ea42a25 +Version: 2.11 +Revision: 1 +Source: http://patches.freeiz.com/alpine/release/src/alpine-%v.tar.xz +Source-MD5: a3bba218787691080d706b36215eec06 # PatchFile: %n.patch # PatchFile-MD5: 5b6ed87fb32bb9e2f9558666a1616a5e NoSourceDirectory: true Depends: cyrus-sasl2-shlibs, libgettext8-shlibs, libiconv, libncurses5-shlibs, openldap24-shlibs, openssl100-shlibs, tcltk-shlibs, xz -BuildDepends: cyrus-sasl2-dev, libgettext8-dev, libiconv-dev, libncurses5, openldap24-dev, openssl100-dev, fink (>= 0.24.12) +BuildDepends: cyrus-sasl2-dev, libgettext8-dev, libiconv-dev, libncurses5, openldap24-dev, openssl100-dev, fink (>= 0.32) GCC: 4.0 Conflicts: pine, pine-ssl, alpine, re-alpine Replaces: pine, pine-ssl, alpine, re-alpine @@ -28,7 +28,6 @@ SetCPPFlags: -DMAC_OSX_KLUDGE -DUSE_INTERP_RESULT CompileScript: << #!/bin/sh -ev - xz -dc %n-%v.clean.tar.lzma | tar xf - cd %n-%v ./configure %c make @@ -53,6 +52,9 @@ Don't forget to copy certs into the /System/Library/OpenSSL/certs directory to use SSL. << +DescPackaging: << +You may need to download the source file by hand thanks to advertising on the link. +<< Maintainer: None Homepage: http://www.washington.edu/alpine << -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[fink/fink] 6446dd: Add rubymods to the list of packages to check for ...
Branch: refs/heads/master Home: https://github.com/fink/fink Commit: 6446dd14ae2bed0cf42b7743be10df11a87aaf8a https://github.com/fink/fink/commit/6446dd14ae2bed0cf42b7743be10df11a87aaf8a Author: Hanspeter Niederstrasser Date: 2013-08-21 (Wed, 21 Aug 2013) Changed paths: M perlmod/Fink/Validation.pm Log Message: --- Add rubymods to the list of packages to check for non-versioned paths -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/sci pymol-py.info,1.14,1.15
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4485 Modified Files: pymol-py.info Log Message: cosmetic improvement in apbstools window Index: pymol-py.info === RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/pymol-py.info,v retrieving revision 1.14 retrieving revision 1.15 diff -u -d -r1.14 -r1.15 --- pymol-py.info 20 Aug 2013 16:49:29 - 1.14 +++ pymol-py.info 21 Aug 2013 21:09:34 - 1.15 @@ -23,7 +23,7 @@ PatchFile3: pymol-py-rest.patch PatchFile3-MD5: 2df10a5a2d66b16082317a823878bde0 PatchFile4: pymol-py-apbstools.patch -PatchFile4-MD5: a3c1544017762613bebc3f5763a434a9 +PatchFile4-MD5: c305ff6350147fda4e925f12cd619e14 SourceDirectory: pymol-%v Depends: python%type_pkg[python], libpng16-shlibs, scipy-py%type_pkg[python], tcltk, pmw-py%type_pkg[python] (>= 1.3.2-1000), freeglut-shlibs, glew-shlibs, blt-shlibs, meschach-shlibs, freetype219-shlibs BuildDepends: libpng16, freeglut, glew, readline6, gdbm3, tcltk-dev, blt, x11-dev, swig, meschach, freetype219, fink (>= 0.30.0) -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/sci pymol-py-apbstools.patch, 1.1, 1.2
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4460 Modified Files: pymol-py-apbstools.patch Log Message: cosmetic improvement in apbstools window Index: pymol-py-apbstools.patch === RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci/pymol-py-apbstools.patch,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- pymol-py-apbstools.patch20 Aug 2013 16:49:17 - 1.1 +++ pymol-py-apbstools.patch21 Aug 2013 21:09:21 - 1.2 @@ -140,7 +140,7 @@ for bar in bars: bar.pack(side=LEFT) -self.ms_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT) +#self.ms_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT) -+ self.ms_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W)) ++ self.ms_group.grid(row=1, padx = 4, pady = 5, sticky=(W)) self.fl_group = Pmw.Group(self.interior(),tag_text='Field Lines') self.fl_buttonbox = Pmw.ButtonBox(self.fl_group.interior(), padx=0) @@ -150,7 +150,7 @@ label.pack() -self.fl_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=TOP) +#self.fl_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=TOP) -+ self.fl_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W)) ++ self.fl_group.grid(row=1, padx = 4, pady = 5, sticky=(E)) self.pi_group = Pmw.Group(self.interior(),tag_text='Positive Isosurface') self.pi_buttonbox = Pmw.ButtonBox(self.pi_group.interior(), padx=0) @@ -160,7 +160,7 @@ self.pos_surf_val.pack(side=LEFT) -self.pi_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT) +#self.pi_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT) -+ self.pi_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W)) ++ self.pi_group.grid(row=2, padx = 4, pady = 5, sticky=(W)) self.ni_group = Pmw.Group(self.interior(),tag_text='Negative Isosurface') self.ni_buttonbox = Pmw.ButtonBox(self.ni_group.interior(), padx=0) @@ -170,7 +170,7 @@ self.neg_surf_val.pack(side=LEFT) -self.ni_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT) +#self.ni_group.pack(fill = 'both', expand = 1, padx = 4, pady = 5, side=LEFT) -+ self.ni_group.grid(padx = 4, pady = 5, sticky=(N, S, E, W)) ++ self.ni_group.grid(row=2, padx = 4, pady = 5, sticky=(E)) -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[fink/fink] a7216d: Recognize -pmXYYZZ (two-digit minor and two-digit ...
Branch: refs/heads/master Home: https://github.com/fink/fink Commit: a7216dba4d59f203b6938a9a2bcfffe1b16a975d https://github.com/fink/fink/commit/a7216dba4d59f203b6938a9a2bcfffe1b16a975d Author: Daniel Macks Date: 2013-08-21 (Wed, 21 Aug 2013) Changed paths: M perlmod/Fink/Validation.pm Log Message: --- Recognize -pmXYYZZ (two-digit minor and two-digit teeny) -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/languages tcltk-10.9.info, 1.6, 1.7
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/languages In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv30848 Modified Files: tcltk-10.9.info Log Message: revert last commit Index: tcltk-10.9.info === RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/languages/tcltk-10.9.info,v retrieving revision 1.6 retrieving revision 1.7 diff -u -d -r1.6 -r1.7 --- tcltk-10.9.info 21 Aug 2013 17:00:51 - 1.6 +++ tcltk-10.9.info 21 Aug 2013 19:24:54 - 1.7 @@ -1,7 +1,7 @@ Package: tcltk Epoch: 1 Version: 8.6.0 -Revision: 101 +Revision: 100 Distribution: 10.9 BuildDepends: << fink-package-precedence, @@ -37,9 +37,6 @@ CompileScript: << #!/bin/sh -ev - # libc++ doesn't set STDC_HEADERS so wrong size is used for ptrdiff_t on x86_64 - perl -pi -e 's|typedef int ptrdiff_t|typedef long ptrdiff_t|g' tcl%v/generic/tclInt.h - pushd tcl%v/unix export COMMAND_MODE=legacy ./configure %c --build=%m-apple-darwin`uname -r|cut -f1 -d.` --host=%m-apple-darwin`uname -r|cut -f1 -d.` -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/languages tcltk-10.9.info, 1.5, 1.6
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/languages In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv24403 Modified Files: tcltk-10.9.info Log Message: use correct size for ptrdiff_t with libc++ Index: tcltk-10.9.info === RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/languages/tcltk-10.9.info,v retrieving revision 1.5 retrieving revision 1.6 diff -u -d -r1.5 -r1.6 --- tcltk-10.9.info 30 Jul 2013 13:39:01 - 1.5 +++ tcltk-10.9.info 21 Aug 2013 17:00:51 - 1.6 @@ -1,7 +1,7 @@ Package: tcltk Epoch: 1 Version: 8.6.0 -Revision: 100 +Revision: 101 Distribution: 10.9 BuildDepends: << fink-package-precedence, @@ -37,6 +37,9 @@ CompileScript: << #!/bin/sh -ev + # libc++ doesn't set STDC_HEADERS so wrong size is used for ptrdiff_t on x86_64 + perl -pi -e 's|typedef int ptrdiff_t|typedef long ptrdiff_t|g' tcl%v/generic/tclInt.h + pushd tcl%v/unix export COMMAND_MODE=legacy ./configure %c --build=%m-apple-darwin`uname -r|cut -f1 -d.` --host=%m-apple-darwin`uname -r|cut -f1 -d.` -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/x11 blt-x86_64.info,1.10,1.11
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/x11 In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv21722 Modified Files: blt-x86_64.info Log Message: build directly against private tk headers in tcltk-dev Index: blt-x86_64.info === RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/x11/blt-x86_64.info,v retrieving revision 1.10 retrieving revision 1.11 diff -u -d -r1.10 -r1.11 --- blt-x86_64.info 21 Aug 2013 13:45:18 - 1.10 +++ blt-x86_64.info 21 Aug 2013 16:07:41 - 1.11 @@ -1,6 +1,6 @@ Package: blt Version: 2.4z -Revision: 159 +Revision: 160 Maintainer: William Scott Architecture: x86_64 BuildDepends: << @@ -20,22 +20,32 @@ SourceDirectory: %N%v PatchFile: %n-x86_64.patch PatchFile-MD5: ba37fedb7ee1b9e71f241f64648fabee -PatchFile2: %n-tcltk86.patch -PatchFile2-MD5: a5603b48d1d42bbce5a3b366936e +PatchFile2: %n-tk-internals.patch +PatchFile2-MD5: 3a22da4a4818e269d7469dffaa607840 PatchFile3: %n-parabuild.patch PatchFile3-MD5: 76d9f5764c478e12dadc0adaed6ed2f8 -SetCFLAGS: -O3 -fno-common -Wall -fno-strict-aliasing NoSetMAKEFLAGS: true -ConfigureParams: --mandir=%p/share/man --x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib --with-tcllibs=%p/lib --with-tklibs=%p/lib --enable-jpeg +ConfigureParams: --mandir=%p/share/man --x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib --with-tcllibs=%p/lib --with-tklibs=%p/lib --enable-jpeg PatchScript:<< #!/bin/sh -ev patch -p1 < %{PatchFile} + patch -p1 < %{PatchFile2} if [[ $(sw_vers -productVersion | cut -d. -f1-2) > 10.8 ]]; then - patch -p1 < %{PatchFile2} perl -pi -e 's|FINITE|isfinite|g' src/bltVector.c src/bltVecMath.c src/bltGrElem.c src/bltGrLine.c fi patch -p1 < %{PatchFile3} << +CompileScript: << + #!/bin/sh -ev + if [[ $(sw_vers -productVersion | cut -d. -f1-2) > 10.8 ]]; then + TK_INCLUDEDIR=%p/include/tcltk-private/tk8.6 + else + TK_INCLUDEDIR=%p/include/tcltk-private/tk8.5 + fi + export CFLAGS="-O3 -fno-common -Wall -fno-strict-aliasing -I$TK_INCLUDEDIR/generic -I$TK_INCLUDEDIR/unix" + ./configure %c + make +<< InstallScript: << #!/bin/sh -ev mkdir -p %i/share/man -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/x11 blt-tcltk86.patch,1.2,NONE
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/x11 In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv21635 Removed Files: blt-tcltk86.patch Log Message: replace blt-tcltk86.patch with blt-tk-internals.patch --- blt-tcltk86.patch DELETED --- -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/x11 blt-tk-internals.patch, NONE, 1.1
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/x11 In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv21566 Added Files: blt-tk-internals.patch Log Message: condense and rename blt-tcltk86.patch --- NEW FILE: blt-tk-internals.patch --- diff -uNr blt2.4z/src/bltArrayObj.c blt2.4z.tcltk86/src/bltArrayObj.c --- blt2.4z/src/bltArrayObj.c 2002-07-12 14:38:47.0 -0400 +++ blt2.4z.tcltk86/src/bltArrayObj.c 2013-08-20 11:23:00.0 -0400 @@ -54,7 +54,7 @@ Blt_HashEntry *hPtr; Blt_HashTable *tablePtr; Tcl_Obj *elemObjPtr; -Tcl_ObjType *oldTypePtr = objPtr->typePtr; +const Tcl_ObjType *oldTypePtr = objPtr->typePtr; char **elemArr; char *string; int isNew; diff -uNr blt2.4z/src/bltInit.c blt2.4z.tcltk86/src/bltInit.c --- blt2.4z/src/bltInit.c 2013-08-20 12:00:03.0 -0400 +++ blt2.4z.tcltk86/src/bltInit.c 2013-08-20 11:23:00.0 -0400 @@ -454,7 +454,7 @@ return TCL_ERROR; } Tcl_SetAssocData(interp, BLT_THREAD_KEY, NULL, [...1376 lines suppressed...] MapFrame(clientData) ClientData clientData; /* Pointer to frame structure. */ { -Frame *framePtr = (Frame *) clientData; +bltFrame *framePtr = (bltFrame *) clientData; /* * Wait for all other background events to be processed before @@ -1067,9 +1054,9 @@ #define Tk_InstanceData(tkwin) (((Tk_FakeWin *)(tkwin))->dummy18) #define Tk_MainPtr(tkwin) (((Tk_FakeWin *)(tkwin))->dummy5) if (Tk_MainPtr(tkwin) != NULL) { - Frame *framePtr; + bltFrame *framePtr; - framePtr = (Frame *) Tk_InstanceData(tkwin); + framePtr = (bltFrame *) Tk_InstanceData(tkwin); TkpMenuNotifyToplevelCreate(framePtr->interp, framePtr->menuName); } #endif /* TK_MAJOR_VERSION > 4 */ -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/libs/rubymods bioruby-rb.info, NONE, 1.1 bioruby-rb.patch, NONE, 1.1
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/rubymods In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv19430 Added Files: bioruby-rb.info bioruby-rb.patch Log Message: new pkg bioruby-rb 1.4.3.0001 --- NEW FILE: bioruby-rb.info --- Info2: << Package: bioruby-rb%type_pkg[ruby] Version: 1.4.3.0001 Revision: 1 Type: ruby (1.9 2.0) Description: Open source bioinformatics library for Ruby License: GPL Maintainer: None # Dependencies: Depends: << ruby%type_pkg[ruby] << BuildDepends: << ruby%type_pkg[ruby]-dev << Recommends: << hmmer, mafft, muscle, tcoffee << Suggests: << clustalw2, emboss << # Unpack Phase: Source: http://bioruby.org/archive/bioruby-%v.tar.gz Source-MD5: 309c17622f827501bc7f10d8b1c284a7 Source-Checksum: SHA1(aa9941d0b11da4b28b4054c25c624d7a70624c2e) PatchFile: %{ni}.patch PatchFile-MD5: da9700d0c38f509f8f6665e750fac3a3 PatchScript: << %{default_script} ### make samples have the correct shebang perl -pi -e 's|!/usr/bin/env ruby|!%p/bin/ruby%type_raw[ruby]|g' sample/*.rb perl -pi -e 's|!/usr/proj/bioruby/bin/ruby|!%p/bin/ruby%type_raw[ruby]|g' sample/biofetch.rb << # Compile Phase: CompileScript: << %p/bin/ruby%type_raw[ruby] setup.rb config %p/bin/ruby%type_raw[ruby] setup.rb setup << InfoTest: << TestDepends: << libxml2-rb%type_pkg[ruby] << TestScript: << #!/bin/sh -ev %p/bin/ruby%type_raw[ruby] test/runner.rb || exit 2 << << # Install Phase: InstallScript: << #!/bin/sh -ev %p/bin/ruby%type_raw[ruby] setup.rb install --prefix=%d mkdir -p %i/share/%n/sample cp -R sample/ %i/share/%n/sample ### prepare for u-a for file in %i/bin/*; do mv $file $file-rb20 done << PostInstScript: << update-alternatives --install %p/bin/bioruby bioruby %p/bin/bioruby-rb%type_pkg[ruby] %type_pkg[ruby] \ --slave %p/bin/br_biofetch br_biofetch %p/bin/br_biofetch-rb%type_pkg[ruby] \ --slave %p/bin/br_bioflat br_bioflat %p/bin/br_bioflat-rb%type_pkg[ruby] \ --slave %p/bin/br_biogetseq br_biogetseq %p/bin/br_biogetseq-rb%type_pkg[ruby] \ --slave %p/bin/br_pmfetch br_pmfetch %p/bin/br_pmfetch-rb%type_pkg[ruby] << PreRmScript: << if [ $1 != "upgrade" ]; then update-alternatives --remove bioruby %p/bin/bioruby-rb%type_pkg[ruby] fi << DocFiles: COPYING KNOWN_ISSUES.rdoc README.rdoc RELEASE_NOTES.rdoc ChangeLog doc/* # Additional Data: Homepage: http://bioruby.org/ DescPackaging: << Former Maintainer: Koen van der Drift << DescDetail: << BioRuby project aims to implement integrated environment for Bioinformatics. Object oriented scripting language Ruby has many good points suitable for bioinfomatics research. Powerful regular expressions like Perl, purely object oriented, simple and very clean syntax -- easy to learn for beginners, easy to use for biologists, powerful enough for developers. << DescPort: << Fix "invalid byte sequence in US-ASCII" error in Bio::TestPhyloXML_class_methods http://wiki.lifesciencedb.jp/mw/index.php/BioRuby Reported: https://github.com/bioruby/bioruby/issues/84 << << --- NEW FILE: bioruby-rb.patch --- --- a/test/unit/bio/db/test_phyloxml.rb +++ b/test/unit/bio/db/test_phyloxml.rb @@ -100,6 +100,7 @@ end #end module TestPhyloXMLData end def test_new + Encoding.default_external="UTF-8" str = File.read(TestPhyloXMLData.example_xml) assert_instance_of(Bio::PhyloXML::Parser, phyloxml = Bio::PhyloXML::Parser.new(str)) -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/x11 blt-x86_64.info,1.9,1.10
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/x11 In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv15771 Modified Files: blt-x86_64.info Log Message: remove stray files from blt-tcltk86.patch and fix parallel build Index: blt-x86_64.info === RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/x11/blt-x86_64.info,v retrieving revision 1.9 retrieving revision 1.10 diff -u -d -r1.9 -r1.10 --- blt-x86_64.info 20 Aug 2013 16:21:19 - 1.9 +++ blt-x86_64.info 21 Aug 2013 13:45:18 - 1.10 @@ -1,6 +1,6 @@ Package: blt Version: 2.4z -Revision: 158 +Revision: 159 Maintainer: William Scott Architecture: x86_64 BuildDepends: << @@ -21,10 +21,11 @@ PatchFile: %n-x86_64.patch PatchFile-MD5: ba37fedb7ee1b9e71f241f64648fabee PatchFile2: %n-tcltk86.patch -PatchFile2-MD5: e72c80ee5a93fd2610a3036adc1c6eb9 +PatchFile2-MD5: a5603b48d1d42bbce5a3b366936e +PatchFile3: %n-parabuild.patch +PatchFile3-MD5: 76d9f5764c478e12dadc0adaed6ed2f8 SetCFLAGS: -O3 -fno-common -Wall -fno-strict-aliasing NoSetMAKEFLAGS: true -SetMAKEFLAGS: -j1 ConfigureParams: --mandir=%p/share/man --x-includes=/usr/X11R6/include --x-libraries=/usr/X11R6/lib --with-tcllibs=%p/lib --with-tklibs=%p/lib --enable-jpeg PatchScript:<< #!/bin/sh -ev @@ -33,6 +34,7 @@ patch -p1 < %{PatchFile2} perl -pi -e 's|FINITE|isfinite|g' src/bltVector.c src/bltVecMath.c src/bltGrElem.c src/bltGrLine.c fi + patch -p1 < %{PatchFile3} << InstallScript: << #!/bin/sh -ev @@ -87,6 +89,9 @@ and adding tcl/tk 8.6.0 internal headers for build on 10.9 and later. Also added misc patches to eliminate warnings on Clang 5.0. +Fix parallel build with +http://svnweb.freebsd.org/ports/head/x11-toolkits/blt/files/patch-parabuild?revision=300897 + Formerly maintained by Matt Stephenson and Jack Howarth. << DescPackaging: << -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/x11 blt-tcltk86.patch,1.1,1.2
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/x11 In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv15698 Modified Files: blt-tcltk86.patch Log Message: remove .rej and .orig files from patch Index: blt-tcltk86.patch === RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/x11/blt-tcltk86.patch,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- blt-tcltk86.patch 20 Aug 2013 16:21:01 - 1.1 +++ blt-tcltk86.patch 21 Aug 2013 13:44:18 - 1.2 @@ -1093,2553 +1093,6 @@ #ifdef WIN32 /* *-- -diff -uNr blt2.4z/src/bltWindow.c.orig blt2.4z.tcltk86/src/bltWindow.c.orig blt2.4z/src/bltWindow.c.orig 1969-12-31 19:00:00.0 -0500 -+++ blt2.4z.tcltk86/src/bltWindow.c.orig 2013-08-20 11:22:59.0 -0400 -@@ -0,0 +1,1782 @@ -+/* -+ * bltWindow.c -- -+ * -+ *This module implements additional window functionality for [...2522 lines suppressed...] -+- int reqWidth, reqHeight; -+- int internalBorderWidth; -+- TkWinInfo *wmInfoPtr; -+- #if (TK_MAJOR_VERSION > 4) -+- TkClassProcs *classProcsPtr; -+- ClientData instanceData; -+- #endif -+- TkWindowPrivate *privatePtr; -+- }; -+- -+ #ifdef WIN32 -+ /* -+--- 53,56 -+ #endif -+ -+ #ifdef WIN32 -+ /* diff -uNr blt2.4z/src/tclInt.h blt2.4z.tcltk86/src/tclInt.h --- blt2.4z/src/tclInt.h 1969-12-31 19:00:00.0 -0500 +++ blt2.4z.tcltk86/src/tclInt.h 2013-08-20 11:44:17.0 -0400 -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/x11 blt-parabuild.patch, NONE, 1.1
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/x11 In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv15653 Added Files: blt-parabuild.patch Log Message: use FreeBSD blt-parabuild.patch --- NEW FILE: blt-parabuild.patch --- --- blt2.4z/src/Makefile.in.orig2013-08-21 09:27:49.0 -0400 +++ blt2.4z/src/Makefile.in 2013-08-21 09:29:21.0 -0400 @@ -181,9 +181,9 @@ $(tcl_only_lib_a): $(TCL_ONLY_OBJS) $(srcdir)/bltInit.c $(CC) -c $(CC_SWITCHES) -DTCL_ONLY -DBLT_LIBRARY=\"$(BLT_LIBRARY)\" \ - $(srcdir)/bltInit.c + $(srcdir)/bltInit.c -o bltInitTclOnly.o $(RM) $@ - $(AR) $@ $(TCL_ONLY_OBJS) bltInit.o + $(AR) $@ $(TCL_ONLY_OBJS) bltInitTclOnly.o $(RANLIB) $@ install: mkdirs install-lib install-demo install-headers @@ -224,7 +224,7 @@ $(XREF) $(XREFFLAGS) $(DEFINES) $(INCLUDES) $(SRCS) clean: - $(RM) $(OBJS) bltInit.o $(lib_a) $(tcl_only_lib_a) \ + $(RM) $(OBJS) bltInit.o bltInitTclOnly.o $(lib_a) $(tcl_only_lib_a) \ $(bltsh)* $(bltwish)* *pure* .pure* (cd shared; $(MAKE) clean) --- blt2.4z/src/shared/Makefile.in.orig 2013-08-21 09:29:33.0 -0400 +++ blt2.4z/src/shared/Makefile.in 2013-08-21 09:31:00.0 -0400 @@ -149,9 +149,9 @@ $(tcl_only_lib_so): $(TCL_ONLY_OBJS) $(CC) -c $(CC_SWITCHES) -DTCL_ONLY -DBLT_LIBRARY=\"$(scriptdir)\" \ - $(srcdir)/bltInit.c + $(srcdir)/bltInit.c -o bltInitTclOnly.o $(RM) $@ - $(SHLIB_LD) $(SHLIB_LD_FLAGS) -o $@ -install_name $(libdir)/$@ -compatibility_version 2.0 -current_version 2.4 bltInit.o $(TCL_ONLY_OBJS) \ + $(SHLIB_LD) $(SHLIB_LD_FLAGS) -o $@ -install_name $(libdir)/$@ -compatibility_version 2.0 -current_version 2.4 bltInitTclOnly.o $(TCL_ONLY_OBJS) \ $(SHLIB_TCL_ONLY_LIB_SPECS) $(TCL_ONLY_LIB_SPECS) install: mkdirs install-lib install-demo @@ -175,7 +175,7 @@ done clean: $(RM) $(OBJS) $(lib_so) $(tcl_only_lib_so) $(bltwish) $(bltsh) \ - *pure* .pure* bltInit.o + *pure* .pure* bltInit.o bltInitTclOnly.o distclean: clean $(RM) Makefile $(srcdir)/*.bak $(srcdir)/*\~ $(srcdir)/"#"* -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/libs/rubymods libxml2-rb.info, NONE, 1.1
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/rubymods In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv15321 Added Files: libxml2-rb.info Log Message: new pkg libxml2-rb 2.7.0 --- NEW FILE: libxml2-rb.info --- Info2: << Package: libxml2-rb%type_pkg[ruby] Version: 2.7.0 Revision: 2 Description: Ruby bindings for libxml2 Type: ruby (1.9 2.0) License: BSD # Free to update, modify and take over Maintainer: Hanspeter Niederstrasser Depends: << libiconv, libxml2-shlibs, ruby%type_pkg[ruby] << BuildDepends: << libiconv-dev, libxml2, ruby%type_pkg[ruby]-dev << Source: http://rubygems.org/downloads/libxml-ruby-%v.gem Source-MD5: 7ab2cd5ce041bb7ed9c1bb2782597d09 Source-Checksum: SHA1(cf38fa3946dca7d182914cd320bcd91aa5af6857) NoSourceDirectory: true CompileScript: echo "" InstallScript: << #!/bin/sh -ev install -d -m 755 %i/lib/ruby/gems/%type_raw[ruby] if [ "%type_raw[ruby]" == "2.0" ]; then %p/bin/gem%type_raw[ruby] install --local --force --install-dir %i/lib/ruby/gems/%type_raw[ruby] --document rdoc libxml-ruby-%v.gem else %p/bin/gem%type_raw[ruby] install --local --force --install-dir %i/lib/ruby/gems/%type_raw[ruby] --rdoc libxml-ruby-%v.gem fi rm -rf %i/var/lib/gems/%type_raw[ruby]/cache << Homepage: http://xml4r.github.io/libxml-ruby/ DescDetail: << The Libxml-Ruby project provides Ruby language bindings for the GNOME Libxml2 XML toolkit. << << -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/libs/rubymods rake-compiler-rb.info, NONE, 1.1
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/rubymods In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv13925 Added Files: rake-compiler-rb.info Log Message: rake-compiler-rb 0.9.1 --- NEW FILE: rake-compiler-rb.info --- Info2: << Package: rake-compiler-rb%type_pkg[ruby] Version: 0.9.1 Revision: 1 Type: ruby (1.9 2.0) Description: Build ruby extension with rake as glue License: BSD ### Free to update, modify, and take over Maintainer: Hanspeter Niederstrasser Depends: << ruby%type_pkg[ruby] << BuildDepends: << ruby%type_pkg[ruby]-dev << Source: http://rubygems.org/downloads/rake-compiler-%v.gem Source-MD5: f0fb038d3cd3f7d5eb83dd3743a2b91d Source-Checksum: SHA1(186c6009502adbfe0c72d47e25e9b031b3667b8e) NoSourceDirectory: true CompileScript: echo "" InstallScript: << #!/bin/sh -ev install -d -m 755 %i/lib/ruby/gems/%type_raw[ruby] if [ "%type_raw[ruby]" == "2.0" ]; then %p/bin/gem%type_raw[ruby] install --local --force --install-dir %i/lib/ruby/gems/%type_raw[ruby] --document rdoc rake-compiler-%v.gem else %p/bin/gem%type_raw[ruby] install --local --force --install-dir %i/lib/ruby/gems/%type_raw[ruby] --rdoc rake-compiler-%v.gem fi rm -rf %i/var/lib/gems/%type_raw[ruby]/cache << Homepage: https://github.com/luislavena/rake-compiler DescDetail: << rake-compiler is first and foremost a productivity tool for Ruby developers. It's goal is to make the busy developer's life easier by simplifying the building and packaging of Ruby extensions by simplifying code and reducing duplication. It follows *convention over configuration* by advocating a standardized build and package structure for both C and Java based RubyGems. << << -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/libs/rubymods sqlite3-rb.info, NONE, 1.1
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/rubymods In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv13938 Added Files: sqlite3-rb.info Log Message: sqlite3-rb 1.3.8 --- NEW FILE: sqlite3-rb.info --- Info2: << Package: sqlite3-rb%type_pkg[ruby] Version: 1.3.8 Revision: 1 Description: SQLite database interface for Ruby Type: ruby (1.9 2.0) License: BSD ## Free to update, modify, and take over. Maintainer: Hanspeter Niederstrasser Depends: << ruby%type_pkg[ruby], sqlite3-shlibs (>= 3.6.16) << BuildDepends: << ruby%type_pkg[ruby]-dev, sqlite3-dev (>= 3.6.16) << Source: https://rubygems.org/downloads/sqlite3-%v.gem Source-MD5: 7ae1d9e66b0c2752cd9cbe75b9a08ce0 Source-Checksum: SHA1(2ca4fe9338c213352643c5865c2b88e3db5f6de7) NoSourceDirectory: true CompileScript: echo "" InstallScript: << #!/bin/sh -ev install -d -m 755 %i/lib/ruby/gems/%type_raw[ruby] if [ "%type_raw[ruby]" == "2.0" ]; then %p/bin/gem%type_raw[ruby] install --local --force --install-dir %i/lib/ruby/gems/%type_raw[ruby] --document rdoc sqlite3-%v.gem else %p/bin/gem%type_raw[ruby] install --local --force --install-dir %i/lib/ruby/gems/%type_raw[ruby] --rdoc sqlite3-%v.gem fi rm -rf %i/var/lib/gems/%type_raw[ruby]/cache << Homepage: https://github.com/sparklemotion/sqlite3-ruby DescDetail: << This module allows Ruby programs to interface with the SQLite3 database engine (www.sqlite.org). << << -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/libs/rubymods hoe-rb.info, 1.1, 1.2
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/rubymods In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv10302 Modified Files: hoe-rb.info Log Message: fix rdoc building on 1.9 Index: hoe-rb.info === RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/rubymods/hoe-rb.info,v retrieving revision 1.1 retrieving revision 1.2 diff -u -d -r1.1 -r1.2 --- hoe-rb.info 21 Aug 2013 11:34:05 - 1.1 +++ hoe-rb.info 21 Aug 2013 11:38:24 - 1.2 @@ -24,8 +24,13 @@ CompileScript: echo "" InstallScript: << + #!/bin/sh -ev install -d -m 755 %i/lib/ruby/gems/%type_raw[ruby] - %p/bin/gem%type_raw[ruby] install --local --force --install-dir %i/lib/ruby/gems/%type_raw[ruby] --document rdoc hoe-%v.gem + if [ "%type_raw[ruby]" == "2.0" ]; then + %p/bin/gem%type_raw[ruby] install --local --force --install-dir %i/lib/ruby/gems/%type_raw[ruby] --document rdoc hoe-%v.gem + else + %p/bin/gem%type_raw[ruby] install --local --force --install-dir %i/lib/ruby/gems/%type_raw[ruby] --rdoc hoe-%v.gem + fi rm -rf %i/var/lib/gems/%type_raw[ruby]/cache # mv %i/var/lib/gems/%type_raw[ruby]/bin %i/ << -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs
[cvs] dists/10.7/stable/main/finkinfo/libs/rubymods hoe-rb.info, NONE, 1.1
Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/rubymods In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv10134 Added Files: hoe-rb.info Log Message: new ruby gem hoe 3.7.1 --- NEW FILE: hoe-rb.info --- Info2: << Package: hoe-rb%type_pkg[ruby] Version: 3.7.1 Revision: 1 Type: ruby (1.9 2.0) Description: Rakefile helper License: BSD ### Free to update, modify, and take over Maintainer: Hanspeter Niederstrasser Depends: << ruby%type_pkg[ruby] << # rubyforge-rb%type_pkg[ruby] (>= 1.0.0-1) BuildDepends: << ruby%type_pkg[ruby]-dev << # rubyforge-rb%type_pkg[ruby] (>= 1.0.0-1) Source: http://rubygems.org/downloads/hoe-%v.gem Source-MD5: d4e5992779bcd33fe842ffb9570c7c7f NoSourceDirectory: true CompileScript: echo "" InstallScript: << install -d -m 755 %i/lib/ruby/gems/%type_raw[ruby] %p/bin/gem%type_raw[ruby] install --local --force --install-dir %i/lib/ruby/gems/%type_raw[ruby] --document rdoc hoe-%v.gem rm -rf %i/var/lib/gems/%type_raw[ruby]/cache # mv %i/var/lib/gems/%type_raw[ruby]/bin %i/ << Homepage: http://www.zenspider.com/projects/hoe.html DescDetail: << Hoe is a simple rake/rubygems helper for project Rakefiles. It generates all the usual tasks for projects including rdoc generation, testing, packaging, and deployment. << << -- Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk ___ Fink-commits mailing list Fink-commits@lists.sourceforge.net http://news.gmane.org/gmane.os.apple.fink.cvs