Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv8241
Added Files:
coot.info ccp4-onlylibs-dev.info
Log Message:
using g++3.3 until software authors correct bug in g++4 compiled code
--- NEW FILE: ccp4-onlylibs-dev.info ---
Package: ccp4-onlylibs-dev
# Use version numbering to sync with the current CCP4 release:
Version: 5.99.5
Revision: 1
#Source: ftp://ftp.ccp4.ac.uk/prerelease/%n.tar.gz
#Source-MD5: cf085751833aecc7ccef9e67de7e9fcc
Source: http://chemistry.ucsc.edu/~wgscott/xtal/%n/%n-%v.tar.gz
Source-MD5: d9dd2e786953c812acec42b41a1c08a5
SourceRename: %n-%v.tar.gz
SourceDirectory: %n
Source2: http://chemistry.ucsc.edu/~wgscott/xtal/%n/%n-extras-0.1.tgz
Source2-MD5: ea307964e3786bef0868ea56aaaa0471
GCC: 3.3
# This is temporary until software author corrects g++4 bug
Depends:
BuildDepends: g77 (>= 3.4.0-2), f2c, fort77
NoSetCPPFLAGS: true
NoSetLDFLAGS: true
###############################################################################
PatchScript: <<
#!/bin/zsh -ef
umask 0022
# Use my patched configure and ccp4.setup-zsh files
cp ../ccp4.setup-zsh include/.
cp ../configure .
# setup scripts for tcsh, zsh and bash users
export TEMPXTAL=$PWD:h
#
perl -pi.bak -e 's|/xtal|\$TEMPXTAL|g' include/ccp4.setup*
# build prefix (changed in install)
perl -pi.bak -e 's|/prefix|%p|g' include/ccp4.setup*
# location of tcktk, blt (not needed here, but doesn't hurt).
perl -pi.bak -e 's|/usr/local/bin|%p/bin|g' include/ccp4.setup*
# same
# make copy for tcsh users (CCP4 convention is no suffix)
cp include/ccp4.setup-dist include/ccp4.setup
#
# We need the mmdbold clipper libraries built for COOT:
perl -pi.bak -e 's|enable_mmdbold=no|enable_mmdbold=yes|g'
lib/clipper/configure*
# clean up:
rm -f include/*.bak lib/clipper/*.bak
<<
###############################################################################
CompileScript: <<
#!/bin/zsh -ef
umask 0022
export TEMPXTAL=$PWD:h
source include/ccp4.setup-zsh
export DYLD_LIBRARY_PATH=$CLIB
#
FLIBS="-L%p/lib -lg2c" LDFLAGS="-L/usr/lib -lg2c -lSystemStubs -L%p/lib"
FC="%p/bin/g77" CXX="/usr/bin/g++-3.3" CC="/usr/bin/gcc" ./configure --onlylibs
Darwin
#
# fix some post-configure bugs
#
make -i 2>../make.log |tee ../make.log
make -i install 2>../makeinst.log |tee ../makeinst.log
#
echo "Ignoring error messages. They are harmless"
#
command ls -1 lib/*.a
sleep 10
#
# Check to make sure all the libraries we need were built:
# (Sort real errors from the bogus ones we suppressed.)
if (( $(command ls -1 lib/*.a | command wc -l) == 15 ));then
print "Build appears to have succeeded."
else
print "*****************************"
print " Build has failed:"
print "*****************************"
sleep 3
cat ../make.log ../makeinst.log
return 1
fi
#
make realclean
<<
###############################################################################
InstallScript: <<
#!/bin/zsh -ef
umask 0022
export TEMPXTAL=$PWD:h
source include/ccp4.setup-zsh
export DYLD_LIBRARY_PATH=$CLIB
ORIGDIR=$(dirname $PWD)
#
# Change environment scripts to match final installation install prefix:
perl -pi.bak -e 's|\$TEMPXTAL|%p/share/xtal|g' include/ccp4.setup*
perl -pi.bak -e 's|CCP4_MASTER/%n|CCP4_MASTER/%n-%v|g' include/ccp4.setup-zsh
perl -pi.bak -e 's|ccp4-5.99.5|%n-%v|g' include/ccp4.setup*
rm -f include/*.bak
perl -pi.bak -e 's|src/fink.build/%n-%v-%r/%n|share/xtal/%n-%v|g'
bin/clipper-config
rm -f bin/clipper-config.bak
perl -pi.bak -e 's|/src/fink.build/%n-%v-%r/%n/lib|/share/xtal/%n-%v/lib|g'
lib/*.la
rm -f lib/*.la.bak
#
# Now install:
mkdir -p %i/share/xtal/%n-%v
cp -R * %i/share/xtal/%n-%v/.
ranlib %i/share/xtal/%n-%v/lib/**/*.a
<<
###############################################################################
Description: CCP4 Libraries
DescDetail: <<
This package installs CCP4 libraries, only. If you need all
of CCP4, install the self-contained CCP4 package instead of this.
The licensing for the CCP4 library loosely conforms to the LGPL,
unlike the more restrictive CCP4 license.
This version compiles with the Apple Lapack/Blas framework
CCP4lib files will be installed under
%p/share/xtal/ccp4-onlylibs-dev-5.99.5.
Programs requiring these libraries to build or run need to
source the appropriate
%p/share/xtal/ccp4-onlylibs-dev-5.99.5/include/ccp4.setup
file for the shell, as is done in the coot.info file.
The primary use for this package, currently, is for compiling COOT.
<<
DocFiles: conditions.txt
Homepage: http://www.ccp4.ac.uk
License: Restrictive
Maintainer: W. G. Scott <[EMAIL PROTECTED]>
--- NEW FILE: coot.info ---
Package:coot
Version: 0.1.0-pre-3
Revision: 4
GCC: 3.3
# This is temporary until software author corrects g++4 bug
#Source: http://www.ysbl.york.ac.uk/~emsley/software/pre-release/%n-%v.tar.gz
Source: http://chemistry.ucsc.edu/~wgscott/xtal/coot/%n-%v.tar.gz
Source-MD5: 6cb82b1069c1975ae05c7215e848af27
SourceDirectory: %n-%v
Source2:
http://www.ysbl.york.ac.uk/~emsley/software/extras/refmac-lib-data-monomers.tar.gz
Source2-MD5: 88cdbabf47914740f2d13e6960eea3c6
Source3:
http://www.ysbl.york.ac.uk/~emsley/software/extras/reference-structures.tar.gz
Source3-MD5: c09bb6b5524901cb0fde14589546224e
###############################################################################
BuildDepends: ccp4-onlylibs-dev, glib, gtk+2, freeglut, gtkglarea, guile16,
guile16-dev, gsl, libglade2, gtk-canvas (>= 0.1.1-20), libart2 (>= 2.3.16-2),
libart2-shlibs (>= 2.3.16-2), guile16-net-http, gtk+2-dev, libgettext3-dev,
imlib, libjpeg, giflib, libpng3, gnome-libs-dev, fftw, libiconv-dev, python24
#
Depends: guile16-shlibs, gtk-canvas (>= 0.1.1-20), gsl-shlibs,
libglade2-shlibs, guile16-gtk, guile16-www, guile16-gui, guile16-goosh (>=
1.3-2), guile16, guile16-net-http, freeglut-shlibs, libart2-shlibs (>=
2.3.16-2), coot-shlibs (= %v-%r), python24
#
BuildDependsOnly: false
NoSetLDFLAGS: true
###############################################################################
Description: Crystallographic molecular graphics
DescDetail: <<
Coot stands for Crystallograhic Object Oriented Toolkit. It is a testbest
toolkit for (Protein) Crystallography. Coot uses professional (and free)
widgets (with the gui builder glade), mmdb, clipper, and OpenGL, together
with a new approach to map contouring and importing/creation and other
(modelling) operations. The mmdb, clipper, ssm and mccp4 libraries are now
provided in the ccp4-onlylibs-dev fink package. On-line documentation is
available from the coot Web site (see below) and is updated regularly.
<<
###############################################################################
PatchScript: <<
#!/bin/zsh -ef
perl -pi.bak -e 's|use-modules \(goosh\)|use-modules \(goosh goosh\)|g'
scheme/coot-utils.scm
perl -pi.bak -e 's/include <malloc.h>//g' **/*.c
<<
###############################################################################
ConfigureParams: --with-mmdb-prefix=$CCP4 --with-clipper-prefix=$CCP4
--with-fftw=$CCP4 --with-glut-prefix=%p --with-gl-prefix=/usr/X11R6
--with-gtkcanvas-prefix=%p --with-ssmlib-prefix=$CCP4 --with-imlib-prefix=%p
--with-gtkgl-prefix=%p --with-glib-prefix=%p --with-gsl-prefix=%p --with-guile
--with-python
###############################################################################
CompileScript: <<
#!/bin/zsh -ef
source %p/share/xtal/ccp4-onlylibs-dev-5.99.5/include/ccp4.setup-zsh
export PATH=%p/bin:%p/share/guile/1.6/scripts/binoverride:$PATH
export SED=/usr/bin/sed
export PYTHONPATH=""
FLIBS="-L%p/lib" \
CPPFLAGS="-I$CCP4/lib/clipper/clipper/mmdbold" \
LDFLAGS="-L$CLIB -L/usr/lib -lSystemStubs -flat_namespace -L%p/lib" \
FC="%p/bin/g77" \
CXX="/usr/bin/g++-3.3" \
CC="/usr/bin/gcc" \
py_path=%p/bin/python \
./configure %c
#
make
<<
###############################################################################
InstallScript: <<
#!/bin/zsh -ef
source %p/share/xtal/ccp4-onlylibs-dev-5.99.5/include/ccp4.setup-zsh
export PATH=%p/bin:%p/share/guile/1.6/scripts/binoverride:$PATH
export PYTHONPATH=""
export SED=/usr/bin/sed
cp src/coot.py python/coot.py
make install prefix=%i
#
# Clean up the 120 MB mess, which zsh makes so much fun:
/bin/rm -f **/*.o
# enable coot to use its own refmac library:
#
perl -pi.bak -e 's|\# COOT_REFMAC_LIB|COOT_REFMAC_LIB|g' setup/coot.sh
perl -pi.bak -e 's|\# export COOT_REFMAC_LIB_DIR|export COOT_REFMAC_LIB_DIR|g'
setup/coot.sh
perl -pi.bak -e 's|\# PYTHONPATH|PYTHONPATH|g' setup/coot.sh
perl -pi.bak -e 's|\# PYTHONPATH|PYTHONPATH|g' setup/coot.csh
perl -pi.bak -e 's|\# setenv COOT_REFMAC_LIB_DIR|setenv COOT_REFMAC_LIB_DIR|g'
setup/coot.csh
#
# Add ancillary files to %i/share/coot:
#
mkdir -p %i/share/coot/etc
mkdir -p %i/share/coot/python
cp -R setup %i/share/coot/.
cp -R ../lib %i/share/coot/.
# cp %i/share/coot/src/coot.py %i/share/coot/python/.
# Reference structures should be in %i/share/coot/reference-structures
cp -R ../reference-structures %i/share/coot/.
cp -R * %i/share/coot/etc/.
# 0.1.0 %n (>= 0.1.0-pre-1-1) 0.1.0 %n (>= 0.1.0-pre-1-1)
# Get rid of spurious, wrongly placed directory
rm -rf %i/setup
# The new wrapper creates problems. Get rid of it.
/bin/rm -f %i/bin/coot
cp %i/bin/coot-real %i/bin/coot
/bin/rm -f %i/bin/coot-real
<<
###############################################################################
DocFiles: README AUTHORS NEWS COPYING ABOUT-NLS BUGS TODO
License: GPL
Maintainer: W. G. Scott <[EMAIL PROTECTED]>
Homepage: http://www.ysbl.york.ac.uk/~emsley/coot/doc/user-manual.html
###############################################################################
#
SplitOff: <<
Package: %N-shlibs
Files: <<
lib/libccp4mg-*.dylib
lib/libcoot-*.dylib
<<
Shlibs: <<
%p/lib/libccp4mg-surface.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libccp4mg-utils.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-analysis.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-AngleInfo.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-atomutils.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-cabuild.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-compat.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-coord-extras.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-coord-utils.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-coords.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-db-main.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-geometry.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-high-res.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-ideal.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-isosurface.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-ligand.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-map-heavy.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-map-utils.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-mini-mol.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-mmtz-extras.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-sequence-view.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-shelx.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-skeleton.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-surface.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-tw.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-utils.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-wrap-guile.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
%p/lib/libcoot-wrap-python.0.0.0.dylib 0.1.0 %n (>= 0.1.0-pre-1-1)
<<
<<
#
###############################################################################
#
SplitOff2: <<
Package: %N-dev
BuildDependsOnly: True
Files: <<
include/*
lib/*.a
lib/*.la
<<
<<
###############################################################################
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