[Fink-users] Failed: phase compiling: arpack-ng-mpi-atlas-3.1.3-3 failed

2013-11-04 Thread Dominique Dhumieres 
Installing arpack-ng-mpi-atlas-3.1.3-3 on

Package manager version: 0.36.0
Distribution version: selfupdate-rsync Mon Nov  4 07:53:13 2013, 10.9, x86_64
Trees: local/main stable/main
Xcode.app: 5.0.1
Xcode command-line tools: 5.0.1.0.1.1382131676
Max. Fink build jobs:  8

failed with

configure: error: in 
`/sw64/src/fink.build/arpack-ng-mpi-atlas-3.1.3-3/arpack-ng-3.1.3':
configure: error: Fortran 77 compiler cannot create executables
See `config.log' for more details
### execution of /tmp/fink.b3OVv failed, exit code 77
### execution of /tmp/fink.VmQBZ failed, exit code 77
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-arpack-ng-mpi-atlas-3.1.3-3
(Reading database ... 80018 files and directories currently installed.)
Removing fink-buildlock-arpack-ng-mpi-atlas-3.1.3-3 ...
Failed: phase compiling: arpack-ng-mpi-atlas-3.1.3-3 failed

The error in config.log is

configure:2892: checking whether the Fortran 77 compiler works
configure:2914: /sw64/bin/gfortran-fsf-4.8  -Wl,-dead_strip_dylibs -L/sw64/lib 
-L/sw64/lib/openmpi conftest.f -lmpi_f77 >&5
ld: library not found for -lmpi_f77

TIA

Dominique

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Re: [Fink-users] Failed: phase compiling: arpack-ng-mpi-atlas-3.1.3-3 failed

2013-11-04 Thread Alexander Hansen 
On 11/4/13 9:19 AM, Dominique Dhumieres wrote:
> Installing arpack-ng-mpi-atlas-3.1.3-3 on
>
> Package manager version: 0.36.0
> Distribution version: selfupdate-rsync Mon Nov  4 07:53:13 2013, 10.9, x86_64
> Trees: local/main stable/main
> Xcode.app: 5.0.1
> Xcode command-line tools: 5.0.1.0.1.1382131676
> Max. Fink build jobs:  8
>
> failed with
>
> configure: error: in 
> `/sw64/src/fink.build/arpack-ng-mpi-atlas-3.1.3-3/arpack-ng-3.1.3':
> configure: error: Fortran 77 compiler cannot create executables
> See `config.log' for more details
> ### execution of /tmp/fink.b3OVv failed, exit code 77
> ### execution of /tmp/fink.VmQBZ failed, exit code 77
> Removing runtime build-lock...
> Removing build-lock package...
> /sw64/bin/dpkg-lockwait -r fink-buildlock-arpack-ng-mpi-atlas-3.1.3-3
> (Reading database ... 80018 files and directories currently installed.)
> Removing fink-buildlock-arpack-ng-mpi-atlas-3.1.3-3 ...
> Failed: phase compiling: arpack-ng-mpi-atlas-3.1.3-3 failed
>
> The error in config.log is
>
> configure:2892: checking whether the Fortran 77 compiler works
> configure:2914: /sw64/bin/gfortran-fsf-4.8  -Wl,-dead_strip_dylibs 
> -L/sw64/lib -L/sw64/lib/openmpi conftest.f -lmpi_f77 >&5
> ld: library not found for -lmpi_f77
>
> TIA
>
> Dominique
>

It's going to take me a while to build up the dependencies for this. 
What does "dpkg -L openmpi" give?

-- 
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/

--
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paper to learn more about secure code signing practices that can help keep
Android apps secure.
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Re: [Fink-users] Failed: phase compiling: arpack-ng-mpi-atlas-3.1.3-3 failed

2013-11-04 Thread Alexander Hansen 
On 11/4/13 9:37 AM, Dominique d'Humières wrote:
>
> Le 4 nov. 2013 à 18:30, Alexander Hansen  > a écrit :
>
>> it's going to take me a while to build up the dependencies for this.
>> What does "dpkg -L openmpi" give?
>
> [Book15] /Users/dominiq% dpkg -L openmpi
> /.



> /sw64/lib
> /sw64/lib/openmpi
> /sw64/lib/openmpi/libmpi.a
> /sw64/lib/openmpi/libmpi.la
> /sw64/lib/openmpi/libmpi_cxx.a
> /sw64/lib/openmpi/libmpi_cxx.la
> /sw64/lib/openmpi/libmpi_mpifh.a
> /sw64/lib/openmpi/libmpi_mpifh.la
> /sw64/lib/openmpi/libmpi_usempi.a
> /sw64/lib/openmpi/libmpi_usempi.la
> /sw64/lib/openmpi/libompitrace.a
> /sw64/lib/openmpi/libompitrace.la
> /sw64/lib/openmpi/libopen-pal.a
> /sw64/lib/openmpi/libopen-pal.la
> /sw64/lib/openmpi/libopen-rte.a
> /sw64/lib/openmpi/libopen-rte.la
> /sw64/lib/openmpi/libopen-trace-format.a
> /sw64/lib/openmpi/libopen-trace-format.la
> /sw64/lib/openmpi/libotfaux.a
> /sw64/lib/openmpi/libotfaux.la
> /sw64/lib/openmpi/libvt-hyb.a
> /sw64/lib/openmpi/libvt-hyb.la
> /sw64/lib/openmpi/libvt-mpi-unify.a
> /sw64/lib/openmpi/libvt-mpi-unify.la
> /sw64/lib/openmpi/libvt-mpi.a
> /sw64/lib/openmpi/libvt-mpi.la
> /sw64/lib/openmpi/libvt-mt.a
> /sw64/lib/openmpi/libvt-mt.la
> /sw64/lib/openmpi/libvt.a
> /sw64/lib/openmpi/libvt.la
> /sw64/lib/openmpi/mpi.mod
> /sw64/lib/openmpi/openmpi
> /sw64/lib/openmpi/openmpi/libompi_dbg_msgq.a
> /sw64/lib/openmpi/openmpi/libompi_dbg_msgq.la
> /sw64/lib/openmpi/openmpi/libompi_dbg_msgq.so
> /sw64/lib/openmpi/pkgconfig
> /sw64/lib/openmpi/pkgconfig/ompi-c.pc
> /sw64/lib/openmpi/pkgconfig/ompi-cxx.pc
> /sw64/lib/openmpi/pkgconfig/ompi-fort.pc
> /sw64/lib/openmpi/pkgconfig/ompi.pc
> /sw64/lib/openmpi/pkgconfig/opal.pc
> /sw64/lib/openmpi/pkgconfig/orte.pc



> /sw64/lib/openmpi/libmpi.dylib
> /sw64/lib/openmpi/libmpi_cxx.dylib
> /sw64/lib/openmpi/libmpi_mpifh.dylib
> /sw64/lib/openmpi/libmpi_usempi.dylib
> /sw64/lib/openmpi/libompitrace.dylib
> /sw64/lib/openmpi/libopal.dylib
> /sw64/lib/openmpi/libopen-pal.dylib
> /sw64/lib/openmpi/libopen-rte.dylib
> /sw64/lib/openmpi/libopen-trace-format.dylib
> /sw64/lib/openmpi/liborte.dylib
> /sw64/lib/openmpi/libotfaux.dylib
> /sw64/lib/openmpi/libvt-hyb.dylib
> /sw64/lib/openmpi/libvt-mpi-unify.dylib
> /sw64/lib/openmpi/libvt-mpi.dylib
> /sw64/lib/openmpi/libvt-mt.dylib
> /sw64/lib/openmpi/libvt.dylib
> /sw64/lib/openmpi/pkgconfig/ompi-f77.pc
> /sw64/lib/openmpi/pkgconfig/ompi-f90.pc



Aha.  I hardcoded the library name in the arpack-mpi* build procedure. 
I'll update it to use pkgconfig and hopefully that will be portable 
across 10.7 - 10.9.
-- 
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/

--
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Re: [Fink-users] Failed: phase compiling: arpack-ng-mpi-atlas-3.1.3-3 failed

2013-11-04 Thread Alexander Hansen 
On 11/4/13 10:32 AM, Alexander Hansen wrote:
> On 11/4/13 9:37 AM, Dominique d'Humières wrote:
>>
>> Le 4 nov. 2013 à 18:30, Alexander Hansen > > a écrit :
>>
>>> it's going to take me a while to build up the dependencies for this.
>>> What does "dpkg -L openmpi" give?
>>
>> [Book15] /Users/dominiq% dpkg -L openmpi
>> /.
>
> 
>
>> /sw64/lib
>> /sw64/lib/openmpi
>> /sw64/lib/openmpi/libmpi.a
>> /sw64/lib/openmpi/libmpi.la
>> /sw64/lib/openmpi/libmpi_cxx.a
>> /sw64/lib/openmpi/libmpi_cxx.la
>> /sw64/lib/openmpi/libmpi_mpifh.a
>> /sw64/lib/openmpi/libmpi_mpifh.la
>> /sw64/lib/openmpi/libmpi_usempi.a
>> /sw64/lib/openmpi/libmpi_usempi.la
>> /sw64/lib/openmpi/libompitrace.a
>> /sw64/lib/openmpi/libompitrace.la
>> /sw64/lib/openmpi/libopen-pal.a
>> /sw64/lib/openmpi/libopen-pal.la
>> /sw64/lib/openmpi/libopen-rte.a
>> /sw64/lib/openmpi/libopen-rte.la
>> /sw64/lib/openmpi/libopen-trace-format.a
>> /sw64/lib/openmpi/libopen-trace-format.la
>> /sw64/lib/openmpi/libotfaux.a
>> /sw64/lib/openmpi/libotfaux.la
>> /sw64/lib/openmpi/libvt-hyb.a
>> /sw64/lib/openmpi/libvt-hyb.la
>> /sw64/lib/openmpi/libvt-mpi-unify.a
>> /sw64/lib/openmpi/libvt-mpi-unify.la
>> /sw64/lib/openmpi/libvt-mpi.a
>> /sw64/lib/openmpi/libvt-mpi.la
>> /sw64/lib/openmpi/libvt-mt.a
>> /sw64/lib/openmpi/libvt-mt.la
>> /sw64/lib/openmpi/libvt.a
>> /sw64/lib/openmpi/libvt.la
>> /sw64/lib/openmpi/mpi.mod
>> /sw64/lib/openmpi/openmpi
>> /sw64/lib/openmpi/openmpi/libompi_dbg_msgq.a
>> /sw64/lib/openmpi/openmpi/libompi_dbg_msgq.la
>> /sw64/lib/openmpi/openmpi/libompi_dbg_msgq.so
>> /sw64/lib/openmpi/pkgconfig
>> /sw64/lib/openmpi/pkgconfig/ompi-c.pc
>> /sw64/lib/openmpi/pkgconfig/ompi-cxx.pc
>> /sw64/lib/openmpi/pkgconfig/ompi-fort.pc
>> /sw64/lib/openmpi/pkgconfig/ompi.pc
>> /sw64/lib/openmpi/pkgconfig/opal.pc
>> /sw64/lib/openmpi/pkgconfig/orte.pc
>
> 
>
>> /sw64/lib/openmpi/libmpi.dylib
>> /sw64/lib/openmpi/libmpi_cxx.dylib
>> /sw64/lib/openmpi/libmpi_mpifh.dylib
>> /sw64/lib/openmpi/libmpi_usempi.dylib
>> /sw64/lib/openmpi/libompitrace.dylib
>> /sw64/lib/openmpi/libopal.dylib
>> /sw64/lib/openmpi/libopen-pal.dylib
>> /sw64/lib/openmpi/libopen-rte.dylib
>> /sw64/lib/openmpi/libopen-trace-format.dylib
>> /sw64/lib/openmpi/liborte.dylib
>> /sw64/lib/openmpi/libotfaux.dylib
>> /sw64/lib/openmpi/libvt-hyb.dylib
>> /sw64/lib/openmpi/libvt-mpi-unify.dylib
>> /sw64/lib/openmpi/libvt-mpi.dylib
>> /sw64/lib/openmpi/libvt-mt.dylib
>> /sw64/lib/openmpi/libvt.dylib
>> /sw64/lib/openmpi/pkgconfig/ompi-f77.pc
>> /sw64/lib/openmpi/pkgconfig/ompi-f90.pc
>
> 
>
> Aha.  I hardcoded the library name in the arpack-mpi* build procedure.
> I'll update it to use pkgconfig and hopefully that will be portable
> across 10.7 - 10.9.

I just checked 3.1.3-4 into CVS.  I haven't quite built up the 
dependencies yet on 10.9 to test it myself, but the pkgconfig logic 
works in arpack-ng-mpi (I didn't need any extra depedencies to build 
that).  Let me know how it works.

-- 
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/

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