date:20131119

Re: [Fink-users] Failed: phase compiling: vtk510-5.10.1-1 failed

2013-11-19 Thread Martin Costabel

On 19/11/13 22:43, Sjors Gielen wrote:
> This is a known problem in VTK 5.10.1: the libtiff bundled with it has
> no support for Mavericks. They're fixing it in 6.1 (git master) and will
> backport the fix to the VTK 5.10. I'll keep you updated.

For vtk58, I just checked in a fix that allows it to build on 10.9.
Besides the duplicate symbol error there were 2 other errors specific to 
the 10.9 compilers.

The duplicate symbols are, as far as I can tell from googling, not 
really a problem caused by vtk, but rather an incomprehension between 
the 10.9 clang and some new code in  and . They 
replaced "static __inline__" by "__header_always_inline", which clang 
apparently doesn't compile correctly by default. It needs a "-std=gnu89" 
compiler flag. The same bug has shown up in other projects.

-- 
Martin

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Re: [Fink-users] bzr-git-py 0.6.11 signature error

2013-11-19 Thread Derek Homeier

On 18.11.2013, at 11:51PM, Daniel Johnson  wrote:

> Ok, version 0.6.12 builds for me and I just checked it in. The 3 test errors 
> are the same ones I've seen for a while. I think it's actually a mistake in 
> the test. It doesn't set a committer name during the test and newer versions 
> of Dulwich don't like that. Just ignore it.

As I mentioned, I got a lot more errors with 0.6.11, but I could check out 
0.6.12 now
(after learning that only one selfupdate mirror is working right now), same 3 
errors here.

Thanks,
Derek



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Re: [Fink-users] Compilation failure in lyx2-x11 remains

2013-11-19 Thread Alexander Hansen

On 11/19/13 2:44 PM, Peter Balling wrote:
> Hi
>
> The lyx2-x11 compilation failure remains both in Fink-0.36.0 and after
> upgrading to Fink-0.36.1.
>
> I tried temporarily to add gradually the symbolic links
>
> /sw/include/tr1 -> /usr/include/c++/4.2.1/tr1
> /sw/include/bits -> /usr/include/c++/4.2.1/bits
> /sw/include/ext -> /usr/include/c++/4.2.1/ext
>
> to provide missing header files. But this generated several other
> errors. So more help is needed. to bring LyX back in Fink for 10.9.
>
> Best regards
> Peter Balling
>
> 
> Peter Balling
> ASC, Antenna Systems Consulting ApS
> Selsmosevej 12
> DK-2630 Taastrup
> Denmark
>
> Tel.: +45 4352 1952
> GSM: +45 2149 2382
> Fax: +45 4352 0172
> E-mail: pball...@asc-consult.dk 
> WWW: http://www.asc-consult.dk
>
>

It works here on 10.9.

The update to the "fink" tool is irrelevant to this issue.  Check 
whether your Fink installation sees lyx2-x11-2.0.6-64 as the current 
version, since that's where the fix got implemented.  If not, do a 
selfupdate.

If you're still having problems, then make sure to undo any manual 
changes you made in your /sw directory, because Fink most definitely is 
not robust against that.
-- 
Alexander Hansen, Ph.D.
Fink User Liaison
My package updates: http://finkakh.wordpress.com/

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Re: [Fink-users] Compilation failure in lyx2-x11 remains

2013-11-19 Thread Peter Balling

Hi

The lyx2-x11 compilation failure remains both in Fink-0.36.0 and after 
upgrading to Fink-0.36.1.

I tried temporarily to add gradually the symbolic links

/sw/include/tr1 -> /usr/include/c++/4.2.1/tr1
/sw/include/bits -> /usr/include/c++/4.2.1/bits
/sw/include/ext -> /usr/include/c++/4.2.1/ext

to provide missing header files. But this generated several other errors. So 
more help is needed. to bring LyX back in Fink for 10.9.

Best regards
Peter Balling


Peter Balling
ASC, Antenna Systems Consulting ApS
Selsmosevej 12
DK-2630 Taastrup
Denmark

Tel.: +45 4352 1952
GSM: +45 2149 2382
Fax: +45 4352 0172
E-mail: pball...@asc-consult.dk
WWW: http://www.asc-consult.dk



On 16 Nov 2013, at 20:35, Alexander Hansen  wrote:

On 11/15/13 7:49 PM, Alexander Hansen wrote:
> On 11/15/13 4:25 PM, Alexander Hansen wrote:
>> On 11/15/13 3:59 PM, Peter Balling wrote:
>>> Hi
>>> I really appreciate the Fink maintainers’ great efforts but need help on
>>> the fatal error below that I encountered  attempting to install lyx2-x11
>>> under OS X 10.9 (13A603) on a dual-core Macmini3.1:
>>> 
>>> Configuration
>>>   Host type:x86_64-apple-darwin13.0.0
>>>   Special build flags:  build=release use-aspell use-enchant
>>> use-hunspell
>>>   C   Compiler: gcc
>>>   C   Compiler LyX flags:
>>>   C   Compiler flags:   -I/usr/X11/include -I/sw/include -O2
>>>   C++ Compiler: g++ (4.2.1)
>>>   C++ Compiler LyX flags:
>>>   C++ Compiler flags:   -I/usr/X11/include -I/sw/include -O2
>>>   Linker flags:
>>>   Linker user flags:-Wl,-framework,AppKit
>>> -Wl,-framework,Carbon -Wl,-framework,OpenGL -Wl,-framework,AGL
>>> -L/usr/X11/lib -lX11 -L/sw/lib
>>>   Qt 4 Frontend:
>>>   Qt 4 version: 4.7.3
>>>   Packaging:posix
>>>   LyX binary dir:   /sw/bin
>>>   LyX files dir:/sw/share/lyx
>>> 
>>> Configuration of LyX was successful.
>>> Type 'make' to compile the program,
>>> and then 'make install' to install it.
>>> make
>>> 
>>> …
>>> 
>>> Making all in support
>>> /sw/lib/qt4-x11/bin/moc -o moc_SystemcallPrivate.cpp SystemcallPrivate.h
>>> /Applications/Xcode.app/Contents/Developer/usr/bin/make  all-am
>>>   CXXFileMonitor.o
>>> In file included from FileMonitor.cpp:13:
>>> In file included from ./../support/FileMonitor.h:18:
>>> In file included from /sw/include/boost/signal.hpp:19:
>>> In file included from /sw/include/boost/signals/signal0.hpp:24:
>>> In file included from /sw/include/boost/signals/signal_template.hpp:18:
>>> In file included from /sw/include/boost/signals/connection.hpp:14:
>>> In file included from /sw/include/boost/smart_ptr.hpp:21:
>>> In file included from /sw/include/boost/shared_ptr.hpp:17:
>>> /sw/include/boost/smart_ptr/shared_ptr.hpp:491:41: warning: rvalue
>>> references
>>>   are a C++11 extension [-Wc++11-extensions]
>>> shared_ptr( std::unique_ptr< Y, D > && r ): px( r.get() ), pn()
>>> ^
>>> /sw/include/boost/smart_ptr/shared_ptr.hpp:556:51: warning: rvalue
>>> references
>>>   are a C++11 extension [-Wc++11-extensions]
>>> shared_ptr & operator=( std::unique_ptr && r )
>>>   ^
>>> /sw/include/boost/smart_ptr/shared_ptr.hpp:558:55: warning: rvalue
>>> references
>>>   are a C++11 extension [-Wc++11-extensions]
>>> this_type( static_cast< std::unique_ptr && >( r )
>>> ).swap(*this);
>>>   ^
>>> In file included from FileMonitor.cpp:18:
>>> In file included from ./../support/bind.h:15:
>>> ./../support/functional.h:20:10: fatal error: 'tr1/functional' file not
>>> found
>>> #include 
>>>  ^
>>> 3 warnings and 1 error generated.
>>> make[5]: *** [FileMonitor.o] Error 1
>>> make[4]: *** [all] Error 2
>>> make[3]: *** [all-recursive] Error 1
>>> make[2]: *** [all] Error 2
>>> make[1]: *** [all-recursive] Error 1
>>> make: *** [all] Error 2
>>> ### execution of /tmp/fink.xr2qQ failed, exit code 2
>>> ### execution of /tmp/fink.CQ3Rx failed, exit code 2
>>> Removing runtime build-lock...
>>> Removing build-lock package...
>>> /sw/bin/dpkg-lockwait -r fink-buildlock-lyx2-x11-2.0.6-63
>>> (Reading database ... 79738 files and directories currently installed.)
>>> Removing fink-buildlock-lyx2-x11-2.0.6-63 ...
>>> Failed: phase compiling: lyx2-x11-2.0.6-63 failed
>>> 
>>> Before reporting any errors, please run "fink selfupdate" and try again.
>>> (I did)
>>> 
>>> If you continue to have issues, please check to see if the FAQ on Fink's
>>> website solves the problem.  If not, ask on one (not both, please) of
>>> these mailing lists:
>>> 
>>> The Fink Users List >> >
>>> The Fink Beginners List >> >,
>>> 
>>> with a carbon copy to

Re: [Fink-users] Failed: phase compiling: vtk510-5.10.1-1 failed

2013-11-19 Thread Sjors Gielen

This is a known problem in VTK 5.10.1: the libtiff bundled with it has
no support for Mavericks. They're fixing it in 6.1 (git master) and will
backport the fix to the VTK 5.10. I'll keep you updated.

Sjors

Dominique Dhumieres schreef op 18-11-13 22:06:
> Installing vtk510-5.10.1-1 on
> 
> Package manager version: 0.36.1
> Distribution version: selfupdate-cvs Mon Nov 18 21:07:34 2013, 10.9, x86_64
> Trees: local/main stable/main
> Xcode.app: 5.0.2
> Xcode command-line tools: 5.0.1.0.1.1382131676
> Max. Fink build jobs:  1
> 
> failed with
> 
> ...
> Linking C shared library ../../bin/libvtktiff.dylib
> cd /sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/vtktiff && 
> /sw64/bin/cmake -E cmake_link_script CMakeFiles/vtktiff.dir/link.txt 
> --verbose=1
> /usr/bin/cc-g -isysroot 
> /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk
>  -mmacosx-version-min=10.9 -dynamiclib -Wl,-headerpad_max_install_names  
> -L/sw64/lib  -compatibility_version 5.10.0 -current_version 5.10.1 -o 
> ../../bin/libvtktiff.5.10.1.dylib -install_name 
> /sw64/lib/vtk510/libvtktiff.5.10.dylib CMakeFiles/vtktiff.dir/tif_aux.c.o 
> CMakeFiles/vtktiff.dir/tif_close.c.o CMakeFiles/vtktiff.dir/tif_codec.c.o 
> CMakeFiles/vtktiff.dir/tif_compress.c.o CMakeFiles/vtktiff.dir/tif_dir.c.o 
> CMakeFiles/vtktiff.dir/tif_dirinfo.c.o CMakeFiles/vtktiff.dir/tif_dirread.c.o 
> CMakeFiles/vtktiff.dir/tif_dirwrite.c.o 
> CMakeFiles/vtktiff.dir/tif_dumpmode.c.o CMakeFiles/vtktiff.dir/tif_error.c.o 
> CMakeFiles/vtktiff.dir/tif_fax3.c.o CMakeFiles/vtktiff.dir/tif_flush.c.o 
> CMakeFiles/vtktiff.dir/tif_getimage.c.o CMakeFiles/vtktiff.dir/tif_jpeg.c.o 
> CMakeFiles/vtktiff.dir/tif_luv.c.o CMakeFiles/vtktiff.dir/tif_lzw.c.o 
> CMakeFiles/vtktiff.dir/tif_next.c.o CMakeFi
les/vtktiff.dir/tif_ojpeg.c.o CMakeFiles/vtktiff.dir/tif_open.c.o 
CMakeFiles/vtktiff.dir/tif_packbits.c.o CMakeFiles/vtktiff.dir/tif_pixarlog.c.o 
CMakeFiles/vtktiff.dir/tif_predict.c.o CMakeFiles/vtktiff.dir/tif_print.c.o 
CMakeFiles/vtktiff.dir/tif_read.c.o CMakeFiles/vtktiff.dir/tif_strip.c.o 
CMakeFiles/vtktiff.dir/tif_swab.c.o CMakeFiles/vtktiff.dir/tif_thunder.c.o 
CMakeFiles/vtktiff.dir/tif_tile.c.o CMakeFiles/vtktiff.dir/tif_version.c.o 
CMakeFiles/vtktiff.dir/tif_warning.c.o CMakeFiles/vtktiff.dir/tif_write.c.o 
CMakeFiles/vtktiff.dir/tif_zip.c.o CMakeFiles/vtktiff.dir/tif_color.c.o 
CMakeFiles/vtktiff.dir/tif_extension.c.o CMakeFiles/vtktiff.dir/tif_unix.c.o 
CMakeFiles/vtktiff.dir/tif_fax3sm.c.o ../../bin/libvtkzlib.5.10.1.dylib 
../../bin/libvtkjpeg.5.10.1.dylib -lm 
> duplicate symbol ___sputc in:
> CMakeFiles/vtktiff.dir/tif_aux.c.o
> CMakeFiles/vtktiff.dir/tif_close.c.o
> duplicate symbol ___sputc in:
> CMakeFiles/vtktiff.dir/tif_aux.c.o
> CMakeFiles/vtktiff.dir/tif_codec.c.o
> duplicate symbol ___sputc in:
> CMakeFiles/vtktiff.dir/tif_aux.c.o
> CMakeFiles/vtktiff.dir/tif_compress.c.o
> duplicate symbol ___sputc in:
> CMakeFiles/vtktiff.dir/tif_aux.c.o
> CMakeFiles/vtktiff.dir/tif_dir.c.o
> duplicate symbol ___sputc in:
> CMakeFiles/vtktiff.dir/tif_aux.c.o
> CMakeFiles/vtktiff.dir/tif_dirinfo.c.o
> duplicate symbol ___sputc in:
> CMakeFiles/vtktiff.dir/tif_aux.c.o
> CMakeFiles/vtktiff.dir/tif_dirread.c.o
> duplicate symbol ___sputc in:
> CMakeFiles/vtktiff.dir/tif_aux.c.o
> CMakeFiles/vtktiff.dir/tif_dirwrite.c.o
> ...
> duplicate symbol ___sincospif in:
> CMakeFiles/vtktiff.dir/tif_aux.c.o
> CMakeFiles/vtktiff.dir/tif_color.c.o
> duplicate symbol ___sincospi in:
> CMakeFiles/vtktiff.dir/tif_aux.c.o
> CMakeFiles/vtktiff.dir/tif_color.c.o
> duplicate symbol ___sputc in:
> CMakeFiles/vtktiff.dir/tif_aux.c.o
> CMakeFiles/vtktiff.dir/tif_extension.c.o
> duplicate symbol ___sputc in:
> CMakeFiles/vtktiff.dir/tif_aux.c.o
> CMakeFiles/vtktiff.dir/tif_unix.c.o
> ld: 91 duplicate symbols for architecture x86_64
> clang: error: linker command failed with exit code 1 (use -v to see 
> invocation)
> make[2]: *** [bin/libvtktiff.5.10.1.dylib] Error 1
> make[2]: Leaving directory `/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild'
> make[1]: *** [Utilities/vtktiff/CMakeFiles/vtktiff.dir/all] Error 2
> make[1]: Leaving directory `/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild'
> make: *** [all] Error 2
> make: Leaving directory `/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild'
> ### execution of /tmp/fink.WSWvW failed, exit code 2
> ### execution of /tmp/fink.ocRJm failed, exit code 2
> Removing runtime build-lock...
> Removing build-lock package...
> /sw64/bin/dpkg-lockwait -r fink-buildlock-vtk510-5.10.1-1
> (Reading database ... 259800 files and directories currently installed.)
> Removing fink-buildlock-vtk510-5.10.1-1 ...
> Reading buildlock packages...
> /sw64/bin/dpkg-lockwait -i 
> /sw64/fink/dists/stable/main/binary-darwin-x86_64/devel/openmpi_1.7.3-1_darwin-x86_64.deb
> Selecting previously deselected package openmpi.
> (Reading database ..

Re: [Fink-users] re-alpine build failure on 10.9

2013-11-19 Thread Viv Kendon

OK, that sounds like good advice, and it installed fine on 
10.9 -- thanks!

But the latest alpine is not available on 10.6, and I 
have a system I can't upgrade that I use re-alpine on 
regularly.  Hopefully the two versions will be compatible 
with the same .pinerc file on a networked home dir...

many thanks,
-- Viv

On Mon, 18 Nov 2013, Hisashi T Fujinaka wrote:

> I think alpine has leapfrogged re-alpine again and you may just want to
> switch.
>
> On Mon, 18 Nov 2013, Viv Kendon wrote:
>
>> trying to install re-alpine-2.02-4 on a set up from scratch
>> 10.9 case sensitive iMac:
>>
>> gcc -DHAVE_CONFIG_H   -I../../../include -I../../../include
>> -I/sw/include -I/sw/include -g -D_THREAD_SAFE  -Dbsd -g -O2
>> -MT alpined.o -MD -MP -MF .deps/alpined.Tpo -c -o alpined.o
>> alpined.c
>> alpined.c:763:50: error: no member named 'result' in 'struct
>> Tcl_Interp'
>>   ...case TCL_OK  : peReturn(cs, "OK",
>> interp->result); break;
>>   ~~  ^
>> alpined.c:764:55: error: no member named 'result' in 'struct
>> Tcl_Interp'
>>   ...case TCL_ERROR  : peReturn(cs, "ERROR",
>> interp->result); break;
>>  ~~  ^
>> alpined.c:765:55: error: no member named 'result' in 'struct
>> Tcl_Interp'
>>   ...case TCL_BREAK  : peReturn(cs, "BREAK",
>> interp->result); break;
>>  ~~  ^
>> alpined.c:766:56: error: no member named 'result' in 'struct
>> Tcl_Interp'
>>   ...case TCL_RETURN : peReturn(cs, "RETURN",
>> interp->result); break;
>>   ~~  ^
>> Package manager version: 0.36.1
>> Distribution version: selfupdate-rsync Mon Nov 18 15:38:11
>> 2013, 10.9, x86_64
>> Trees: local/main stable/main
>> Xcode.app: 5.0.2
>> Xcode command-line tools: 5.0.1.0.1.1382131676
>> re-alpine-2.02-4 is set to build with only one job.
>
> -- 
> Hisashi T Fujinaka - ht...@twofifty.com
> BSEE(6/86) + BSChem(3/95) + BAEnglish(8/95) + MSCS(8/03) + $2.50 = latte
>
> --
> Shape the Mobile Experience: Free Subscription
> Software experts and developers: Be at the forefront of tech innovation.
> Intel(R) Software Adrenaline delivers strategic insight and game-changing
> conversations that shape the rapidly evolving mobile landscape. Sign up now.
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>



Dr Viv Kendonhttp://quantum.leeds.ac.uk/~viv
tel: +44 113 343 4864  Physics and Astronomy
Quantum Information GroupUniversity of Leeds

I am working to contract as part of UCU's action short of a strike from
1st November in support of fair pay in HE.  It may take longer than usual
for me to respond to your message.
  For more info see http://www.ucu.org.uk/hepay13
  To join the union and the action http://www.ucu.org.uk/join


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Re: [Fink-users] Failed: phase compiling: vtk510-5.10.1-1 failed

Re: [Fink-users] bzr-git-py 0.6.11 signature error

Re: [Fink-users] Compilation failure in lyx2-x11 remains

Re: [Fink-users] Compilation failure in lyx2-x11 remains

Re: [Fink-users] Failed: phase compiling: vtk510-5.10.1-1 failed

Re: [Fink-users] re-alpine build failure on 10.9

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