Re: [Fink-users] FWD: Re: [EMBOSS] install EMBOSS-3.0.0 on Intel Mac

2006-06-07 Thread Alexander K. Hansen
On 6/6/06, Koen van der Drift [EMAIL PROTECTED] wrote:
 Hi,

 Does anyone have an idea how to fix the linker problem that Haruo is
 experiencing when installing emboss on a intel-Mac? See below for the
 error messages.

 thanks,

 - Koen.


 On Jun 6, 2006, at 1:06 AM, [EMAIL PROTECTED] wrote:

  Thank you very much.
 
  As explained by Dave Morrison, you are on an intel-mac, but used
  the PPC installer for fink. So you first need to make sure you are
  using the proper fink installation, see his instructions below.
 
  http://fink.sourceforge.net/index.php?phpLang=en
  I got the file fink-0.24.17.tar,  expand the file,  and run the
  command ./bootstrap.sh.
  At the end of the bootstrap process,  run fink selfupdate.
 
  Although I successfully ran the commands such as fink install kterm,
  the command fink install emboss said as follows:
  -
  libtool: link: cannot find the library `/Users/gaou/ginstall/ROOT/
  usr/local//lib/libfreetype.la'
  make[2]: *** [aaindexextract] Error 1
  make[1]: *** [all-recursive] Error 1
  make: *** [all-recursive] Error 1
  ### execution of make failed, exit code 2
  Removing build lock...
  /sw/bin/dpkg-lockwait -r fink-buildlock-emboss-3.0.0-102
  (Reading database ... 4222 files and directories currently installed.)
  Removing fink-buildlock-emboss-3.0.0-102 ...
  Failed: phase compiling: emboss-3.0.0-102 failed
  -
 
  I also see that you have stuff installed in /opt en in /usr/local.
  This can potentially conflict with fink. You will have to make a
  decision on which package distribution you are using, mix-and-
  match often gives unexpected results, as you have experienced.
 
  I am wondering if you could teach me how to solve the problem.
  -
  $ make
 
  libtool: link: warning: library `/usr/local/lib/libgd.la' was moved.
  libtool: link: warning: library `/usr/local/lib/libgd.la' was moved.
  libtool: link: cannot find the library `/opt/local/lib/libjpeg.la'
  make[2]: *** [aaindexextract] Error 1
  make[1]: *** [all-recursive] Error 1
  make: *** [all-recursive] Error 1
  -
 
  .bash_profile
  ---
  export PATH=/bin:/sbin:/usr/bin:/usr/sbin:/usr/local/bin
  #export PATH=$PATH:/usr/local/bin
  #export PATH=$PATH:/Applications
 
  #test -r /usr/local/bin/init.sh  . /usr/local/bin/init.sh
 
  #test -r /sw/bin/init.sh  . /sw/bin/init.sh
 
  . /sw/bin/init.sh
  ---




Try:

find /sw/lib -name \*.la | xargs grep -l bad path | xargs dpkg -S

where bad path would be /Users/gaou/ginstall/ROOT/usr/local//lib/ in
this case.


-- 
Alexander K. Hansen
Fink Documenter (still)


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[Fink-users] FWD: Re: [EMBOSS] install EMBOSS-3.0.0 on Intel Mac

2006-06-06 Thread Koen van der Drift
Hi,

Does anyone have an idea how to fix the linker problem that Haruo is  
experiencing when installing emboss on a intel-Mac? See below for the  
error messages.

thanks,

- Koen.


On Jun 6, 2006, at 1:06 AM, [EMAIL PROTECTED] wrote:

 Thank you very much.

 As explained by Dave Morrison, you are on an intel-mac, but used  
 the PPC installer for fink. So you first need to make sure you are  
 using the proper fink installation, see his instructions below.

 http://fink.sourceforge.net/index.php?phpLang=en
 I got the file fink-0.24.17.tar,  expand the file,  and run the  
 command ./bootstrap.sh.
 At the end of the bootstrap process,  run fink selfupdate.

 Although I successfully ran the commands such as fink install kterm,
 the command fink install emboss said as follows:
 -
 libtool: link: cannot find the library `/Users/gaou/ginstall/ROOT/ 
 usr/local//lib/libfreetype.la'
 make[2]: *** [aaindexextract] Error 1
 make[1]: *** [all-recursive] Error 1
 make: *** [all-recursive] Error 1
 ### execution of make failed, exit code 2
 Removing build lock...
 /sw/bin/dpkg-lockwait -r fink-buildlock-emboss-3.0.0-102
 (Reading database ... 4222 files and directories currently installed.)
 Removing fink-buildlock-emboss-3.0.0-102 ...
 Failed: phase compiling: emboss-3.0.0-102 failed
 -

 I also see that you have stuff installed in /opt en in /usr/local.  
 This can potentially conflict with fink. You will have to make a  
 decision on which package distribution you are using, mix-and- 
 match often gives unexpected results, as you have experienced.

 I am wondering if you could teach me how to solve the problem.
 -
 $ make

 libtool: link: warning: library `/usr/local/lib/libgd.la' was moved.
 libtool: link: warning: library `/usr/local/lib/libgd.la' was moved.
 libtool: link: cannot find the library `/opt/local/lib/libjpeg.la'
 make[2]: *** [aaindexextract] Error 1
 make[1]: *** [all-recursive] Error 1
 make: *** [all-recursive] Error 1
 -

 .bash_profile
 ---
 export PATH=/bin:/sbin:/usr/bin:/usr/sbin:/usr/local/bin
 #export PATH=$PATH:/usr/local/bin
 #export PATH=$PATH:/Applications

 #test -r /usr/local/bin/init.sh  . /usr/local/bin/init.sh

 #test -r /sw/bin/init.sh  . /sw/bin/init.sh

 . /sw/bin/init.sh
 ---



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