[Fink-users] Failed: phase compiling: symband-oct364-1.0.10-6 failed
Alex, I have tried to indtall the octave packages on Package manager version: 0.36.0 Distribution version: selfupdate-rsync Sun Nov 10 13:41:46 2013, 10.9, x86_64 Trees: local/main stable/main Xcode.app: 5.0.1 Xcode command-line tools: 5.0.1.0.1.1382131676 symband-oct364-1.0.10-6 is set to build with only one job. So far I have only been able to install i actuarial-oct3641.1.0-3 Actuarial functions for Octave i benchmark-oct3641.1.1-3 Benchmark the speed of Octave i bioinfo-oct364 0.1.2-3 Bioinformatics manipulation for Octave i cgi-oct364 0.1.0-1 Common Gateway Interface for Octave i civil-engineering-oct3641.0.7-3 Octave Civil Engineering ODEs i dataframe-oct3640.9.1-3 Octave data manipulation toolbox i fpl-oct364 1.3.4-1 Save Octave data in graphical formats i gnuplot-oct364 1.0.1-5 Octave scripts for gnuplot i plot-oct364 1.1.0-2 Additional plotting tools for Octave i splines-oct364 1.2.4-1 Additional Cubic spline functions for Octave i zenity-oct364 0.5.7-4 Zenity-based tools for Octave Several packages fail to install as symband-oct364-1.0.10-6: ans = /sw64/src/fink.build/symband-oct364-1.0.10-6/bld/share/octave/3.6.4/packages mkdir (/var/tmp/oct-PeHrc5) untar (./symband.tar, /var/tmp/oct-PeHrc5) /sw64/bin/mkoctfile: line 513: oct-cxx: command not found make: *** [SymBand.oct] Error 127 'make' returned the following error: mkoctfile SymBand.cc error: called from 'pkgconfigure_make' in file /sw64/share/octave/3.6.4/m/pkg/pkg.m near line 1385, column 9 error: called from: error: /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 827, column 5 error: /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 383, column 9 error: /sw64/src/fink.build/symband-oct364-1.0.10-6/bld/octave-forge-comp at line 4, column 1 ### execution of /tmp/fink.D_Xs5 failed, exit code 1 Removing runtime build-lock... Removing build-lock package... /sw64/bin/dpkg-lockwait -r fink-buildlock-symband-oct364-1.0.10-6 (Reading database ... 185980 files and directories currently installed.) Removing fink-buildlock-symband-oct364-1.0.10-6 ... Failed: phase compiling: symband-oct364-1.0.10-6 failed i.e., oct-cxx: command not found. TIA Dominique -- November Webinars for C, C++, Fortran Developers Accelerate application performance with scalable programming models. Explore techniques for threading, error checking, porting, and tuning. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60136231iu=/4140/ostg.clktrk ___ Fink-users mailing list Fink-users@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: symband-oct364-1.0.10-6 failed
On 11/10/13 11:43 AM, Dominique Dhumieres wrote: Alex, I have tried to indtall the octave packages on Package manager version: 0.36.0 Distribution version: selfupdate-rsync Sun Nov 10 13:41:46 2013, 10.9, x86_64 Trees: local/main stable/main Xcode.app: 5.0.1 Xcode command-line tools: 5.0.1.0.1.1382131676 symband-oct364-1.0.10-6 is set to build with only one job. So far I have only been able to install i actuarial-oct3641.1.0-3 Actuarial functions for Octave i benchmark-oct3641.1.1-3 Benchmark the speed of Octave i bioinfo-oct364 0.1.2-3 Bioinformatics manipulation for Octave i cgi-oct364 0.1.0-1 Common Gateway Interface for Octave i civil-engineering-oct3641.0.7-3 Octave Civil Engineering ODEs i dataframe-oct3640.9.1-3 Octave data manipulation toolbox i fpl-oct364 1.3.4-1 Save Octave data in graphical formats i gnuplot-oct364 1.0.1-5 Octave scripts for gnuplot i plot-oct364 1.1.0-2 Additional plotting tools for Octave i splines-oct364 1.2.4-1 Additional Cubic spline functions for Octave i zenity-oct364 0.5.7-4 Zenity-based tools for Octave Several packages fail to install as symband-oct364-1.0.10-6: ans = /sw64/src/fink.build/symband-oct364-1.0.10-6/bld/share/octave/3.6.4/packages mkdir (/var/tmp/oct-PeHrc5) untar (./symband.tar, /var/tmp/oct-PeHrc5) /sw64/bin/mkoctfile: line 513: oct-cxx: command not found make: *** [SymBand.oct] Error 127 'make' returned the following error: mkoctfile SymBand.cc error: called from 'pkgconfigure_make' in file /sw64/share/octave/3.6.4/m/pkg/pkg.m near line 1385, column 9 error: called from: error: /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 827, column 5 error: /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 383, column 9 error: /sw64/src/fink.build/symband-oct364-1.0.10-6/bld/octave-forge-comp at line 4, column 1 ### execution of /tmp/fink.D_Xs5 failed, exit code 1 Removing runtime build-lock... Removing build-lock package... /sw64/bin/dpkg-lockwait -r fink-buildlock-symband-oct364-1.0.10-6 (Reading database ... 185980 files and directories currently installed.) Removing fink-buildlock-symband-oct364-1.0.10-6 ... Failed: phase compiling: symband-oct364-1.0.10-6 failed i.e., oct-cxx: command not found. TIA Dominique Oops. Try editing /sw/bin/mkoctfile-3.6.4 as a superuser and change all of the instances of oct-cc to /sw/var/lib/fink/path-prefix-clang/cc and those of oct-cxx to /sw/var/lib/fink/path-prefix-clang/c++ . -- Alexander Hansen, Ph.D. Fink User Liaison My package updates: http://finkakh.wordpress.com/ -- November Webinars for C, C++, Fortran Developers Accelerate application performance with scalable programming models. Explore techniques for threading, error checking, porting, and tuning. Get the most from the latest Intel processors and coprocessors. See abstracts and register http://pubads.g.doubleclick.net/gampad/clk?id=60136231iu=/4140/ostg.clktrk ___ Fink-users mailing list Fink-users@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
Re: [Fink-users] Failed: phase compiling: symband-oct364-1.0.10-6 failed
Try editing /sw/bin/mkoctfile-3.6.4 as a superuser and change all of the
instances of oct-cc to /sw/var/lib/fink/path-prefix-clang/cc and those
of oct-cxx to /sw/var/lib/fink/path-prefix-clang/c++ .
Thanks for the tip. I had to edit /sw64/bin/mkoctfile also and
/sw64/var/lib/fink/path-prefix-clang did not exist (I copied the one
from 10.8. I am now stuck with the following failures
ans =
/sw64/src/fink.build/miscellaneous-oct364-1.2.0-3/bld/share/octave/3.6.4/packages
mkdir (/var/tmp/oct-Eeuiaz)
untar (./miscellaneous-1.2.0.tar, /var/tmp/oct-Eeuiaz)
Undefined symbols for architecture x86_64:
check_version(std::string const, std::string const), referenced from:
_Gcell2cell in cell2cell.o
octave_dld_function::create(octave_value_list (*)(octave_value_list const,
int), octave_shlib const, std::string const, std::string const), referenced
from:
_Gcell2cell in cell2cell.o
std::string::_Rep::_M_destroy(std::allocatorchar const), referenced from:
_Gcell2cell in cell2cell.o
Fcell2cell(octave_value_list const, int) in cell2cell.o
Arraystd::string::ArrayRep::~ArrayRep() in cell2cell.o
std::string::_Rep::_M_dispose(std::allocatorchar const), referenced from:
_Gcell2cell in cell2cell.o
Fcell2cell(octave_value_list const, int) in cell2cell.o
std::string::_Rep::_S_empty_rep_storage, referenced from:
_Gcell2cell in cell2cell.o
Fcell2cell(octave_value_list const, int) in cell2cell.o
Arraystd::string::ArrayRep::~ArrayRep() in cell2cell.o
std::basic_stringchar, std::char_traitschar, std::allocatorchar
::basic_string(char const*, std::allocatorchar const), referenced from:
_Gcell2cell in cell2cell.o
Fcell2cell(octave_value_list const, int) in cell2cell.o
std::ios_base::Init::Init(), referenced from:
__GLOBAL__sub_I_cell2cell.cc in cell2cell.o
std::ios_base::Init::~Init(), referenced from:
__GLOBAL__sub_I_cell2cell.cc in cell2cell.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [cell2cell.oct] Error 1
'make' returned the following error: mkoctfile -Wall cell2cell.cc
error: called from 'pkgconfigure_make' in file
/sw64/share/octave/3.6.4/m/pkg/pkg.m near line 1385, column 9
error: called from:
error: /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 827, column 5
error: /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 383, column 9
error:
/sw64/src/fink.build/miscellaneous-oct364-1.2.0-3/bld/octave-forge-comp at line
4, column 1
### execution of /tmp/fink.0wN0_ failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-miscellaneous-oct364-1.2.0-3
(Reading database ... 186574 files and directories currently installed.)
Removing fink-buildlock-miscellaneous-oct364-1.2.0-3 ...
Failed: phase compiling: miscellaneous-oct364-1.2.0-3 failed
and
ans =
/sw64/src/fink.build/odepkg-atlas-oct364-0.8.4-2/bld/share/octave/3.6.4/packages
mkdir (/var/tmp/oct-yjNzF3)
untar (./odepkg.tar, /var/tmp/oct-yjNzF3)
checking for gcc... /sw64/var/lib/fink/path-prefix-clang/cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /sw64/var/lib/fink/path-prefix-clang/cc accepts -g... yes
checking for /sw64/var/lib/fink/path-prefix-clang/cc option to accept ISO
C89... none needed
checking for mkoctfile... /sw64/bin/mkoctfile-3.6.4
retrieving compile and link flags from /sw64/bin/mkoctfile-3.6.4
checking for F77_FUNC... yes
checking for octave... /sw64/bin/octave-3.6.4
checking for OCTAVE_VERSION in Octave... 3.6.4
checking for octave_config_info('canonical_host_type') in Octave...
x86_64-apple-darwin
checking for octave_config_info('SHLEXT') in Octave... dylib
checking whether ln -s works... yes
checking for ranlib... ranlib
checking for strip... strip
configure: creating ./config.status
config.status: creating Makeconf
$prefix is
/sw64/src/fink.build/odepkg-atlas-oct364-0.8.4-2/bld/share/octave/3.6.4/packages/odepkg-0.8.4
$exec_prefix is ${prefix}
octave commands will install into the following directories:
m-files: /sw64/share/octave/3.6.4/site/m/octave-forge
oct-files: /sw64/lib/octave/3.6.4/site/oct/x86_64-apple-darwin/octave-forge
binaries: /sw64/lib/octave/3.6.4/site/exec/x86_64-apple-darwin
alternatives:
m-files: /sw64/share/octave/3.6.4/site/octave-forge-alternatives/m
oct-files:
/sw64/lib/octave/3.6.4/site/octave-forge-alternatives/oct/x86_64-apple-darwin
shell commands will install into the following directories:
binaries: ${exec_prefix}/bin
man pages: ${datarootdir}/man
libraries: ${exec_prefix}/lib
headers: ${prefix}/include
octave-forge is configured with
octave:
Re: [Fink-users] Failed: phase compiling: symband-oct364-1.0.10-6 failed
On 11/10/13 2:34 PM, Dominique Dhumieres wrote:
Try editing /sw/bin/mkoctfile-3.6.4 as a superuser and change all of the
instances of oct-cc to /sw/var/lib/fink/path-prefix-clang/cc and those
of oct-cxx to /sw/var/lib/fink/path-prefix-clang/c++ .
Thanks for the tip. I had to edit /sw64/bin/mkoctfile also and
/sw64/var/lib/fink/path-prefix-clang did not exist (I copied the one
from 10.8. I am now stuck with the following failures
ans =
/sw64/src/fink.build/miscellaneous-oct364-1.2.0-3/bld/share/octave/3.6.4/packages
mkdir (/var/tmp/oct-Eeuiaz)
untar (./miscellaneous-1.2.0.tar, /var/tmp/oct-Eeuiaz)
Undefined symbols for architecture x86_64:
check_version(std::string const, std::string const), referenced from:
_Gcell2cell in cell2cell.o
octave_dld_function::create(octave_value_list (*)(octave_value_list
const, int), octave_shlib const, std::string const, std::string const),
referenced from:
_Gcell2cell in cell2cell.o
std::string::_Rep::_M_destroy(std::allocatorchar const), referenced
from:
_Gcell2cell in cell2cell.o
Fcell2cell(octave_value_list const, int) in cell2cell.o
Arraystd::string::ArrayRep::~ArrayRep() in cell2cell.o
std::string::_Rep::_M_dispose(std::allocatorchar const), referenced
from:
_Gcell2cell in cell2cell.o
Fcell2cell(octave_value_list const, int) in cell2cell.o
std::string::_Rep::_S_empty_rep_storage, referenced from:
_Gcell2cell in cell2cell.o
Fcell2cell(octave_value_list const, int) in cell2cell.o
Arraystd::string::ArrayRep::~ArrayRep() in cell2cell.o
std::basic_stringchar, std::char_traitschar, std::allocatorchar
::basic_string(char const*, std::allocatorchar const), referenced from:
_Gcell2cell in cell2cell.o
Fcell2cell(octave_value_list const, int) in cell2cell.o
std::ios_base::Init::Init(), referenced from:
__GLOBAL__sub_I_cell2cell.cc in cell2cell.o
std::ios_base::Init::~Init(), referenced from:
__GLOBAL__sub_I_cell2cell.cc in cell2cell.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see
invocation)
make: *** [cell2cell.oct] Error 1
'make' returned the following error: mkoctfile -Wall cell2cell.cc
error: called from 'pkgconfigure_make' in file
/sw64/share/octave/3.6.4/m/pkg/pkg.m near line 1385, column 9
error: called from:
error: /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 827, column 5
error: /sw64/share/octave/3.6.4/m/pkg/pkg.m at line 383, column 9
error:
/sw64/src/fink.build/miscellaneous-oct364-1.2.0-3/bld/octave-forge-comp at
line 4, column 1
### execution of /tmp/fink.0wN0_ failed, exit code 1
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-miscellaneous-oct364-1.2.0-3
(Reading database ... 186574 files and directories currently installed.)
Removing fink-buildlock-miscellaneous-oct364-1.2.0-3 ...
Failed: phase compiling: miscellaneous-oct364-1.2.0-3 failed
and
ans =
/sw64/src/fink.build/odepkg-atlas-oct364-0.8.4-2/bld/share/octave/3.6.4/packages
mkdir (/var/tmp/oct-yjNzF3)
untar (./odepkg.tar, /var/tmp/oct-yjNzF3)
checking for gcc... /sw64/var/lib/fink/path-prefix-clang/cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /sw64/var/lib/fink/path-prefix-clang/cc accepts -g... yes
checking for /sw64/var/lib/fink/path-prefix-clang/cc option to accept ISO
C89... none needed
checking for mkoctfile... /sw64/bin/mkoctfile-3.6.4
retrieving compile and link flags from /sw64/bin/mkoctfile-3.6.4
checking for F77_FUNC... yes
checking for octave... /sw64/bin/octave-3.6.4
checking for OCTAVE_VERSION in Octave... 3.6.4
checking for octave_config_info('canonical_host_type') in Octave...
x86_64-apple-darwin
checking for octave_config_info('SHLEXT') in Octave... dylib
checking whether ln -s works... yes
checking for ranlib... ranlib
checking for strip... strip
configure: creating ./config.status
config.status: creating Makeconf
$prefix is
/sw64/src/fink.build/odepkg-atlas-oct364-0.8.4-2/bld/share/octave/3.6.4/packages/odepkg-0.8.4
$exec_prefix is ${prefix}
octave commands will install into the following directories:
m-files: /sw64/share/octave/3.6.4/site/m/octave-forge
oct-files:
/sw64/lib/octave/3.6.4/site/oct/x86_64-apple-darwin/octave-forge
binaries: /sw64/lib/octave/3.6.4/site/exec/x86_64-apple-darwin
alternatives:
m-files: /sw64/share/octave/3.6.4/site/octave-forge-alternatives/m
oct-files:
/sw64/lib/octave/3.6.4/site/octave-forge-alternatives/oct/x86_64-apple-darwin
shell commands will install into the following directories:
binaries:
