[Fink-users] Failed: phase compiling: vtk510-5.10.1-1 failed
Trying to install vtk510-5.10.1-1 on Package manager version: 0.38.2 Distribution version: selfupdate-rsync Sat Nov 29 16:31:56 2014, 10.10, x86_64 Trees: local/main stable/main stable/crypto Xcode.app: 6.1 Xcode command-line tools: 6.1.0.0.1.1413057044 Max. Fink build jobs: 8 failed with … [ 68%] Building CXX object Hybrid/CMakeFiles/vtkHybrid.dir/vtkAxesActor.cxx.o cd /sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Hybrid /sw64/var/lib/fink/path-prefix-clang/c++ -DVTK_IN_VTK -DvtkHybrid_EXPORTS -g -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk -mmacosx-version-min=10.10 -fPIC -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Common -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/VolumeRendering -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Rendering -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Charts -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Chemistry -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/vtkalglib -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Wrapping/Python -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Wrapping/Python -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Infovis -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Geovis -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Views -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Parallel -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/VolumeRendering -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Hybrid -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Widgets -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Rendering -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Charts -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Chemistry -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Rendering/Testing/Cxx -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/IO -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Imaging -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Graphics -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/GenericFiltering -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Filtering -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Common -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Common/Testing/Cxx -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/vtknetcdf -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/vtknetcdf -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/vtknetcdf/include -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/vtklibproj4 -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/vtklibproj4 -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/DICOMParser -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/DICOMParser -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/vtkfreetype/include -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/vtkfreetype/include -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/LSDyna -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/LSDyna -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/MaterialLibrary -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/MaterialLibrary -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/vtkmetaio -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/vtkmetaio -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/verdict -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/verdict -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/vtkhdf5 -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/vtkhdf5 -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/vtkhdf5/src -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/vtkhdf5/src -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/vtkhdf5/hl/src -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/vtkhdf5/hl/src -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/Cosmo -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/Cosmo -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/VPIC -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/VPIC -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/utf8/source -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/vtkalglib -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/ftgl/src -I/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/ftgl -I/sw64/src/fink.build/vtk510-5.10.1-1/VTK5.10.1/Utilities/TclTk/internals/tk8.6 -I/usr/X11R6/include -I/sw64/include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/include -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/include/darwin -I/sw64/include/python2.7-o CMakeFiles/vtkHybrid.dir/vtkAxesActor.cxx.o -c
Re: [Fink-users] Failed: phase compiling: vtk510-5.10.1-1 failed
This is a known problem in VTK 5.10.1: the libtiff bundled with it has no support for Mavericks. They're fixing it in 6.1 (git master) and will backport the fix to the VTK 5.10. I'll keep you updated. Sjors Dominique Dhumieres schreef op 18-11-13 22:06: Installing vtk510-5.10.1-1 on Package manager version: 0.36.1 Distribution version: selfupdate-cvs Mon Nov 18 21:07:34 2013, 10.9, x86_64 Trees: local/main stable/main Xcode.app: 5.0.2 Xcode command-line tools: 5.0.1.0.1.1382131676 Max. Fink build jobs: 1 failed with ... Linking C shared library ../../bin/libvtktiff.dylib cd /sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/vtktiff /sw64/bin/cmake -E cmake_link_script CMakeFiles/vtktiff.dir/link.txt --verbose=1 /usr/bin/cc-g -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk -mmacosx-version-min=10.9 -dynamiclib -Wl,-headerpad_max_install_names -L/sw64/lib -compatibility_version 5.10.0 -current_version 5.10.1 -o ../../bin/libvtktiff.5.10.1.dylib -install_name /sw64/lib/vtk510/libvtktiff.5.10.dylib CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_close.c.o CMakeFiles/vtktiff.dir/tif_codec.c.o CMakeFiles/vtktiff.dir/tif_compress.c.o CMakeFiles/vtktiff.dir/tif_dir.c.o CMakeFiles/vtktiff.dir/tif_dirinfo.c.o CMakeFiles/vtktiff.dir/tif_dirread.c.o CMakeFiles/vtktiff.dir/tif_dirwrite.c.o CMakeFiles/vtktiff.dir/tif_dumpmode.c.o CMakeFiles/vtktiff.dir/tif_error.c.o CMakeFiles/vtktiff.dir/tif_fax3.c.o CMakeFiles/vtktiff.dir/tif_flush.c.o CMakeFiles/vtktiff.dir/tif_getimage.c.o CMakeFiles/vtktiff.dir/tif_jpeg.c.o CMakeFiles/vtktiff.dir/tif_luv.c.o CMakeFiles/vtktiff.dir/tif_lzw.c.o CMakeFiles/vtktiff.dir/tif_next.c.o CMakeFi les/vtktiff.dir/tif_ojpeg.c.o CMakeFiles/vtktiff.dir/tif_open.c.o CMakeFiles/vtktiff.dir/tif_packbits.c.o CMakeFiles/vtktiff.dir/tif_pixarlog.c.o CMakeFiles/vtktiff.dir/tif_predict.c.o CMakeFiles/vtktiff.dir/tif_print.c.o CMakeFiles/vtktiff.dir/tif_read.c.o CMakeFiles/vtktiff.dir/tif_strip.c.o CMakeFiles/vtktiff.dir/tif_swab.c.o CMakeFiles/vtktiff.dir/tif_thunder.c.o CMakeFiles/vtktiff.dir/tif_tile.c.o CMakeFiles/vtktiff.dir/tif_version.c.o CMakeFiles/vtktiff.dir/tif_warning.c.o CMakeFiles/vtktiff.dir/tif_write.c.o CMakeFiles/vtktiff.dir/tif_zip.c.o CMakeFiles/vtktiff.dir/tif_color.c.o CMakeFiles/vtktiff.dir/tif_extension.c.o CMakeFiles/vtktiff.dir/tif_unix.c.o CMakeFiles/vtktiff.dir/tif_fax3sm.c.o ../../bin/libvtkzlib.5.10.1.dylib ../../bin/libvtkjpeg.5.10.1.dylib -lm duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_close.c.o duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_codec.c.o duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_compress.c.o duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_dir.c.o duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_dirinfo.c.o duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_dirread.c.o duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_dirwrite.c.o ... duplicate symbol ___sincospif in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_color.c.o duplicate symbol ___sincospi in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_color.c.o duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_extension.c.o duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_unix.c.o ld: 91 duplicate symbols for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) make[2]: *** [bin/libvtktiff.5.10.1.dylib] Error 1 make[2]: Leaving directory `/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild' make[1]: *** [Utilities/vtktiff/CMakeFiles/vtktiff.dir/all] Error 2 make[1]: Leaving directory `/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild' make: *** [all] Error 2 make: Leaving directory `/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild' ### execution of /tmp/fink.WSWvW failed, exit code 2 ### execution of /tmp/fink.ocRJm failed, exit code 2 Removing runtime build-lock... Removing build-lock package... /sw64/bin/dpkg-lockwait -r fink-buildlock-vtk510-5.10.1-1 (Reading database ... 259800 files and directories currently installed.) Removing fink-buildlock-vtk510-5.10.1-1 ... Reading buildlock packages... /sw64/bin/dpkg-lockwait -i /sw64/fink/dists/stable/main/binary-darwin-x86_64/devel/openmpi_1.7.3-1_darwin-x86_64.deb Selecting previously deselected package openmpi. (Reading database ... 259799 files and directories currently installed.) Unpacking openmpi (from
Re: [Fink-users] Failed: phase compiling: vtk510-5.10.1-1 failed
On 19/11/13 22:43, Sjors Gielen wrote: This is a known problem in VTK 5.10.1: the libtiff bundled with it has no support for Mavericks. They're fixing it in 6.1 (git master) and will backport the fix to the VTK 5.10. I'll keep you updated. For vtk58, I just checked in a fix that allows it to build on 10.9. Besides the duplicate symbol error there were 2 other errors specific to the 10.9 compilers. The duplicate symbols are, as far as I can tell from googling, not really a problem caused by vtk, but rather an incomprehension between the 10.9 clang and some new code in stdio.h and math.h. They replaced static __inline__ by __header_always_inline, which clang apparently doesn't compile correctly by default. It needs a -std=gnu89 compiler flag. The same bug has shown up in other projects. -- Martin -- Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311iu=/4140/ostg.clktrk ___ Fink-users mailing list Fink-users@lists.sourceforge.net List archive: http://news.gmane.org/gmane.os.macosx.fink.user Subscription management: https://lists.sourceforge.net/lists/listinfo/fink-users
[Fink-users] Failed: phase compiling: vtk510-5.10.1-1 failed
Installing vtk510-5.10.1-1 on Package manager version: 0.36.1 Distribution version: selfupdate-cvs Mon Nov 18 21:07:34 2013, 10.9, x86_64 Trees: local/main stable/main Xcode.app: 5.0.2 Xcode command-line tools: 5.0.1.0.1.1382131676 Max. Fink build jobs: 1 failed with ... Linking C shared library ../../bin/libvtktiff.dylib cd /sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild/Utilities/vtktiff /sw64/bin/cmake -E cmake_link_script CMakeFiles/vtktiff.dir/link.txt --verbose=1 /usr/bin/cc-g -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.9.sdk -mmacosx-version-min=10.9 -dynamiclib -Wl,-headerpad_max_install_names -L/sw64/lib -compatibility_version 5.10.0 -current_version 5.10.1 -o ../../bin/libvtktiff.5.10.1.dylib -install_name /sw64/lib/vtk510/libvtktiff.5.10.dylib CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_close.c.o CMakeFiles/vtktiff.dir/tif_codec.c.o CMakeFiles/vtktiff.dir/tif_compress.c.o CMakeFiles/vtktiff.dir/tif_dir.c.o CMakeFiles/vtktiff.dir/tif_dirinfo.c.o CMakeFiles/vtktiff.dir/tif_dirread.c.o CMakeFiles/vtktiff.dir/tif_dirwrite.c.o CMakeFiles/vtktiff.dir/tif_dumpmode.c.o CMakeFiles/vtktiff.dir/tif_error.c.o CMakeFiles/vtktiff.dir/tif_fax3.c.o CMakeFiles/vtktiff.dir/tif_flush.c.o CMakeFiles/vtktiff.dir/tif_getimage.c.o CMakeFiles/vtktiff.dir/tif_jpeg.c.o CMakeFiles/vtktiff.dir/tif_luv.c.o CMakeFiles/vtktiff.dir/tif_lzw.c.o CMakeFiles/vtktiff.dir/tif_next.c.o CMakeFil es/vtktiff.dir/tif_ojpeg.c.o CMakeFiles/vtktiff.dir/tif_open.c.o CMakeFiles/vtktiff.dir/tif_packbits.c.o CMakeFiles/vtktiff.dir/tif_pixarlog.c.o CMakeFiles/vtktiff.dir/tif_predict.c.o CMakeFiles/vtktiff.dir/tif_print.c.o CMakeFiles/vtktiff.dir/tif_read.c.o CMakeFiles/vtktiff.dir/tif_strip.c.o CMakeFiles/vtktiff.dir/tif_swab.c.o CMakeFiles/vtktiff.dir/tif_thunder.c.o CMakeFiles/vtktiff.dir/tif_tile.c.o CMakeFiles/vtktiff.dir/tif_version.c.o CMakeFiles/vtktiff.dir/tif_warning.c.o CMakeFiles/vtktiff.dir/tif_write.c.o CMakeFiles/vtktiff.dir/tif_zip.c.o CMakeFiles/vtktiff.dir/tif_color.c.o CMakeFiles/vtktiff.dir/tif_extension.c.o CMakeFiles/vtktiff.dir/tif_unix.c.o CMakeFiles/vtktiff.dir/tif_fax3sm.c.o ../../bin/libvtkzlib.5.10.1.dylib ../../bin/libvtkjpeg.5.10.1.dylib -lm duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_close.c.o duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_codec.c.o duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_compress.c.o duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_dir.c.o duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_dirinfo.c.o duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_dirread.c.o duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_dirwrite.c.o ... duplicate symbol ___sincospif in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_color.c.o duplicate symbol ___sincospi in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_color.c.o duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_extension.c.o duplicate symbol ___sputc in: CMakeFiles/vtktiff.dir/tif_aux.c.o CMakeFiles/vtktiff.dir/tif_unix.c.o ld: 91 duplicate symbols for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) make[2]: *** [bin/libvtktiff.5.10.1.dylib] Error 1 make[2]: Leaving directory `/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild' make[1]: *** [Utilities/vtktiff/CMakeFiles/vtktiff.dir/all] Error 2 make[1]: Leaving directory `/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild' make: *** [all] Error 2 make: Leaving directory `/sw64/src/fink.build/vtk510-5.10.1-1/VTKBuild' ### execution of /tmp/fink.WSWvW failed, exit code 2 ### execution of /tmp/fink.ocRJm failed, exit code 2 Removing runtime build-lock... Removing build-lock package... /sw64/bin/dpkg-lockwait -r fink-buildlock-vtk510-5.10.1-1 (Reading database ... 259800 files and directories currently installed.) Removing fink-buildlock-vtk510-5.10.1-1 ... Reading buildlock packages... /sw64/bin/dpkg-lockwait -i /sw64/fink/dists/stable/main/binary-darwin-x86_64/devel/openmpi_1.7.3-1_darwin-x86_64.deb Selecting previously deselected package openmpi. (Reading database ... 259799 files and directories currently installed.) Unpacking openmpi (from .../openmpi_1.7.3-1_darwin-x86_64.deb) ... Setting up openmpi (1.7.3-1) ... Clearing dependency_libs of .la files being installed Failed: phase compiling: vtk510-5.10.1-1 failed TIA Dominique -- Shape the Mobile Experience: Free Subscription Software experts and developers:
