Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-08 Thread Noein
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

There are strong economic interests to cheat about medical research, so
we should be extremely fair, transparent and informative about those
articles.

Mentioning the funding source of any research is the building base of
critical trust.[1]

[1]: critical trust is the kind of trust one obtains after having access
to all the necessary data to make a judgment in complete liberty of thought.


On 08/11/2010 02:54, Andreas Kolbe wrote:
 Subject: Re: [Foundation-l] Funding Sources of Medical Research, was 
 Misplaced Reliance, was Re: Paid editing...
 To: Wikimedia Foundation Mailing List foundation-l@lists.wikimedia.org
 Date: Monday, 8 November, 2010, 0:22
 On 7 November 2010 12:26, David
 Gerard dger...@gmail.com
 wrote:
 That naming funding sources is in fact *standard in
 the field* is,
 however, something that strongly suggests we should
 not deliberately
 withhold such information from the reader.

 Err we don't. They are free to consult the source.

 However the field in question has long established
 standards when it
 comes to citation.

 So for example when Anti-HIV-1 activity of salivary MUC5B
 and MUC7
 mucins from HIV patients with different CD4 counts cites
 Interaction
 of HIV-1 and human salivary mucin they do so in the form
 of:

 Bergey EJ, Cho MI, Blumberg BM, Hammarskjold ML, Rekosh D,
 Epstein
 LG, Levine MJ. Interaction of HIV-1 and human salivary
 mucins. J
 Acquir Immune Defic Syndr. 1994;7:995–1002.

 And do not mention it's funding source

 (see http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2967540/).
 
 
 This is a valid argument.
 
 However, mentioning the funding source is not unheard of in medical 
 citations. See the first example given here:
 
 http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=citmedpart=A32352#A32755
 
 Funding is consistently included on abstract pages. Examples:
 
 http://www.plosone.org/article/info:doi/10.1371/journal.pone.0013614
 http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010548
 
 Here, funding is included along with the publication data. It is a standard 
 format.
 
 Where references are hyperlinked, as in your counterexample, professionals 
 can view the article. Our readers cannot, unless they have access to the
 relevant academic database.
 
 A.
 
 
   
 
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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-08 Thread geni
On 8 November 2010 05:54, Andreas Kolbe jayen...@yahoo.com wrote:
 Subject: Re: [Foundation-l] Funding Sources of Medical Research, was 
 Misplaced Reliance, was Re: Paid editing...
 To: Wikimedia Foundation Mailing List foundation-l@lists.wikimedia.org
 Date: Monday, 8 November, 2010, 0:22
 On 7 November 2010 12:26, David
 Gerard dger...@gmail.com
 wrote:
  That naming funding sources is in fact *standard in
 the field* is,
  however, something that strongly suggests we should
 not deliberately
  withhold such information from the reader.

 Err we don't. They are free to consult the source.

 However the field in question has long established
 standards when it
 comes to citation.

 So for example when Anti-HIV-1 activity of salivary MUC5B
 and MUC7
 mucins from HIV patients with different CD4 counts cites
 Interaction
 of HIV-1 and human salivary mucin they do so in the form
 of:

 Bergey EJ, Cho MI, Blumberg BM, Hammarskjold ML, Rekosh D,
 Epstein
 LG, Levine MJ. Interaction of HIV-1 and human salivary
 mucins. J
 Acquir Immune Defic Syndr. 1994;7:995–1002.

 And do not mention it's funding source

 (see http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2967540/).


 This is a valid argument.

 However, mentioning the funding source is not unheard of in medical
 citations. See the first example given here:

 http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=citmedpart=A32352#A32755

It's extremely uncommon though as any random perusal of pubmed will show.

 Funding is consistently included on abstract pages. Examples:

 http://www.plosone.org/article/info:doi/10.1371/journal.pone.0013614
 http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010548

 Here, funding is included along with the publication data. It is a standard
 format.


Sure but not for references. The references in your examples do not
include funding sources.

 Where references are hyperlinked, as in your counterexample, professionals
 can view the article. Our readers cannot, unless they have access to the
 relevant academic database.

We have a long standing principle that we don't worry about things
like paywalls when it comes to sources. Eh your averaged paywalled
journal is highly assessable compared to some of the stuff I've cited
over the years.



-- 
geni

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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-08 Thread David Goodman
Most journals do make their abstracts visible, so if funding is
included there, one can see it without logging in.

But there are two  serious ethical problems, one of them is what
people who are funded by a commercial or POV entity do incorrectly
because of that funding.
The worse is the concealment of one's funding in order to avoid
suspicion of the bias.

Everything that is done incorrectly because of funding is also done by
those who have an intellectual  or emotional stake in the outcome


On Mon, Nov 8, 2010 at 6:37 PM, geni geni...@gmail.com wrote:
 On 8 November 2010 05:54, Andreas Kolbe jayen...@yahoo.com wrote:
 Subject: Re: [Foundation-l] Funding Sources of Medical Research, was 
 Misplaced Reliance, was Re: Paid editing...
 To: Wikimedia Foundation Mailing List foundation-l@lists.wikimedia.org
 Date: Monday, 8 November, 2010, 0:22
 On 7 November 2010 12:26, David
 Gerard dger...@gmail.com
 wrote:
  That naming funding sources is in fact *standard in
 the field* is,
  however, something that strongly suggests we should
 not deliberately
  withhold such information from the reader.

 Err we don't. They are free to consult the source.

 However the field in question has long established
 standards when it
 comes to citation.

 So for example when Anti-HIV-1 activity of salivary MUC5B
 and MUC7
 mucins from HIV patients with different CD4 counts cites
 Interaction
 of HIV-1 and human salivary mucin they do so in the form
 of:

 Bergey EJ, Cho MI, Blumberg BM, Hammarskjold ML, Rekosh D,
 Epstein
 LG, Levine MJ. Interaction of HIV-1 and human salivary
 mucins. J
 Acquir Immune Defic Syndr. 1994;7:995–1002.

 And do not mention it's funding source

 (see http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2967540/).


 This is a valid argument.

 However, mentioning the funding source is not unheard of in medical
 citations. See the first example given here:

 http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=citmedpart=A32352#A32755

 It's extremely uncommon though as any random perusal of pubmed will show.

 Funding is consistently included on abstract pages. Examples:

 http://www.plosone.org/article/info:doi/10.1371/journal.pone.0013614
 http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010548

 Here, funding is included along with the publication data. It is a standard
 format.


 Sure but not for references. The references in your examples do not
 include funding sources.

 Where references are hyperlinked, as in your counterexample, professionals
 can view the article. Our readers cannot, unless they have access to the
 relevant academic database.

 We have a long standing principle that we don't worry about things
 like paywalls when it comes to sources. Eh your averaged paywalled
 journal is highly assessable compared to some of the stuff I've cited
 over the years.



 --
 geni

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-- 
David Goodman, Ph.D, M.L.S.
http://en.wikipedia.org/wiki/User_talk:DGG

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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-08 Thread Fred Bauder
 Most journals do make their abstracts visible, so if funding is
 included there, one can see it without logging in.

 But there are two  serious ethical problems, one of them is what
 people who are funded by a commercial or POV entity do incorrectly
 because of that funding.
 The worse is the concealment of one's funding in order to avoid
 suspicion of the bias.

 Everything that is done incorrectly because of funding is also done by
 those who have an intellectual  or emotional stake in the outcome

Yes, and that's where we fall down. Many of us are editors with purpose.
They many be noble purposes, but often we ourselves have an agenda, of
some sort, even if only to highlight neglected truths.

Somehow though, the evil of exposing the gulag pales beside the evil of
selling drugs with serious unreported side effects.

Fred


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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-08 Thread Noein
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Hash: SHA1

On 09/11/2010 01:33, Fred Bauder wrote:

 Everything that is done incorrectly because of funding is also done by
 those who have an intellectual  or emotional stake in the outcome

 Yes, and that's where we fall down. Many of us are editors with purpose.
 They many be noble purposes, but often we ourselves have an agenda, of
 some sort, even if only to highlight neglected truths.

I'm trying to understand precisely what you mean here. Could you elaborate ?
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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-07 Thread geni
On 7 November 2010 12:26, David Gerard dger...@gmail.com wrote:
 That naming funding sources is in fact *standard in the field* is,
 however, something that strongly suggests we should not deliberately
 withhold such information from the reader.

Err we don't. They are free to consult the source.

However the field in question has long established standards when it
comes to citation.

So for example when Anti-HIV-1 activity of salivary MUC5B and MUC7
mucins from HIV patients with different CD4 counts cites Interaction
of HIV-1 and human salivary mucin they do so in the form of:

Bergey EJ, Cho MI, Blumberg BM, Hammarskjold ML, Rekosh D, Epstein
LG, Levine MJ. Interaction of HIV-1 and human salivary mucins. J
Acquir Immune Defic Syndr. 1994;7:995–1002.

And do not mention it's funding source

(see http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2967540/).


So if you wanted to follow the standards of their field editors would
have to disclose their funding source. This would presumably result in
a history entry looking something like this:

12:23, 6 November 2010 examplestudent (talk | contribs | block)
(127,638 bytes) (nonsensical edit involving plankton)(funding:parents
+student loans company limited+Joint Information Systems Committee)
(rollback | undo)

-- 
geni

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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-07 Thread FT2
Not so. The difference is we document reliable sources, we don't create
them.

A user writing X said Y is not verifying that Y is true. They are
verifying that X said Y was true. They need to show evidence that any third
party can check, why they believe X said Y is true.

Once that's done, the status of the editor is immaterial - because they
themselves are not creating anything so their ability to create information
isn't at question. They are simply saying this is what X said, this is
where anyone can check X said it and form their own view.

By contrast academics and researchers writing papers are forming their own
view. So the factors going into that are crucial to assess the quality and
basis of that view and reliance a reader may wish to personally place on it.

FT2

On Mon, Nov 8, 2010 at 12:22 AM, geni geni...@gmail.com wrote:

 On 7 November 2010 12:26, David Gerard dger...@gmail.com wrote:
  That naming funding sources is in fact *standard in the field* is,
  however, something that strongly suggests we should not deliberately
  withhold such information from the reader.

 Err we don't. They are free to consult the source.

 However the field in question has long established standards when it
 comes to citation.

 So for example when Anti-HIV-1 activity of salivary MUC5B and MUC7
 mucins from HIV patients with different CD4 counts cites Interaction
 of HIV-1 and human salivary mucin they do so in the form of:

 Bergey EJ, Cho MI, Blumberg BM, Hammarskjold ML, Rekosh D, Epstein
 LG, Levine MJ. Interaction of HIV-1 and human salivary mucins. J
 Acquir Immune Defic Syndr. 1994;7:995–1002.

 And do not mention it's funding source

 (see http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2967540/).


 So if you wanted to follow the standards of their field editors would
 have to disclose their funding source. This would presumably result in
 a history entry looking something like this:

 12:23, 6 November 2010 examplestudent (talk | contribs | block)
 (127,638 bytes) (nonsensical edit involving plankton)(funding:parents
 +student loans company limited+Joint Information Systems Committee)
 (rollback | undo)

 --
 geni

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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-07 Thread John Vandenberg
On Mon, Nov 8, 2010 at 12:28 PM, FT2 ft2.w...@gmail.com wrote:
 Not so. The difference is we document reliable sources, we don't create
 them.

 A user writing X said Y is not verifying that Y is true. They are
 verifying that X said Y was true. They need to show evidence that any third
 party can check, why they believe X said Y is true.

 Once that's done, the status of the editor is immaterial - because they
 themselves are not creating anything so their ability to create information
 isn't at question. They are simply saying this is what X said, this is
 where anyone can check X said it and form their own view.

The point geni was making is that while it is appropriate for journals
to publish funding information with their articles, it is not normal
for people citing those articles to note the same with each citation.

I think geni also flippantly pointed out that the potential for COI of
our contributors is the elephant in the room.  I hope you don't truly
believe that our contributors have no COI and the COI of our editors
is immaterial on the _current_ state of the content.  The hope is that
over time NPOV will rise to the top, but in many topical areas this
has yet to eventuate.

 By contrast academics and researchers writing papers are forming their own
 view. So the factors going into that are crucial to assess the quality and
 basis of that view and reliance a reader may wish to personally place on it.

The factors involved are not limited to funding; at the end of the day
we need to be discerning about which sources we use, rather than use
them all and add lots of information to the citations for the reader
to decide how biased the sources are.

--
John Vandenberg

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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-07 Thread FT2
I haven't heard the word eventuate before.

My comment addresses the plain meaning of the words - namely that if
sourcing style was followed editors would have to disclose funding sources
too. The wiki process means that editors (even grossly biased ones) are not
creators of novel views. Their edits and the article as a whole can be
derived from writings of those who did create the views included. It's the
latter whose biases, ultimately, need checking.

A wiki editor who is biased  has their edits (and the state of the article)
speak for them. The material can therefore in principle be neutrally
assessed by his/her peers without knowledge of that editor's private views
*. That's not true for the authors of the content we cite.

* - of course often that can't happen due to disruption, but in principle we
could find neutral editors for any article in any stage, who could so assess
it. So in principle this is always true even in specific cases it doesn't
happen.

FT2

On Mon, Nov 8, 2010 at 1:44 AM, John Vandenberg jay...@gmail.com wrote:

 On Mon, Nov 8, 2010 at 12:28 PM, FT2 ft2.w...@gmail.com wrote:
  Not so. The difference is we document reliable sources, we don't create
  them.
 
  A user writing X said Y is not verifying that Y is true. They are
  verifying that X said Y was true. They need to show evidence that any
 third
  party can check, why they believe X said Y is true.
 
  Once that's done, the status of the editor is immaterial - because they
  themselves are not creating anything so their ability to create
 information
  isn't at question. They are simply saying this is what X said, this is
  where anyone can check X said it and form their own view.

 The point geni was making is that while it is appropriate for journals
 to publish funding information with their articles, it is not normal
 for people citing those articles to note the same with each citation.

 I think geni also flippantly pointed out that the potential for COI of
 our contributors is the elephant in the room.  I hope you don't truly
 believe that our contributors have no COI and the COI of our editors
 is immaterial on the _current_ state of the content.  The hope is that
 over time NPOV will rise to the top, but in many topical areas this
 has yet to eventuate.

  By contrast academics and researchers writing papers are forming their
 own
  view. So the factors going into that are crucial to assess the quality
 and
  basis of that view and reliance a reader may wish to personally place on
 it.

 The factors involved are not limited to funding; at the end of the day
 we need to be discerning about which sources we use, rather than use
 them all and add lots of information to the citations for the reader
 to decide how biased the sources are.

 --
 John Vandenberg

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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-07 Thread Fred Bauder

 I think geni also flippantly pointed out that the potential for COI of
 our contributors is the elephant in the room.  I hope you don't truly
 believe that our contributors have no COI and the COI of our editors
 is immaterial on the _current_ state of the content.  The hope is that
 over time NPOV will rise to the top, but in many topical areas this
 has yet to eventuate.

This is a good point, rarely are editors simply randomly editing. They
have interests, they may be fans, have partisan views, be doing actual
public relations work, or just have an interest in getting a story that
is frequently distorted straight.

 The factors involved are not limited to funding; at the end of the day
 we need to be discerning about which sources we use, rather than use
 them all and add lots of information to the citations for the reader
 to decide how biased the sources are.

 --
 John Vandenberg

A brief notation of the funding of a research project is not lots of
information. We have good sources that research projects funded by
marketers, at least those published, show systemic bias. Not enough bias
to disqualify them entirely as a class as reliable sources, but enough to
justify noting funding.

Journalistic reports by state supported media share that same
characteristic. It would be wrong to wholly discount it, but equally
wrong to treat it as we would independent journalism.

Bottom line, is reliance on editorial judgment. Something that is hard
for a mass organization to develop.

Fred


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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-07 Thread Andreas Kolbe
 Subject: Re: [Foundation-l] Funding Sources of Medical Research, was 
 Misplaced Reliance, was Re: Paid editing...
 To: Wikimedia Foundation Mailing List foundation-l@lists.wikimedia.org
 Date: Monday, 8 November, 2010, 0:22
 On 7 November 2010 12:26, David
 Gerard dger...@gmail.com
 wrote:
  That naming funding sources is in fact *standard in
 the field* is,
  however, something that strongly suggests we should
 not deliberately
  withhold such information from the reader.
 
 Err we don't. They are free to consult the source.
 
 However the field in question has long established
 standards when it
 comes to citation.
 
 So for example when Anti-HIV-1 activity of salivary MUC5B
 and MUC7
 mucins from HIV patients with different CD4 counts cites
 Interaction
 of HIV-1 and human salivary mucin they do so in the form
 of:
 
 Bergey EJ, Cho MI, Blumberg BM, Hammarskjold ML, Rekosh D,
 Epstein
 LG, Levine MJ. Interaction of HIV-1 and human salivary
 mucins. J
 Acquir Immune Defic Syndr. 1994;7:995–1002.
 
 And do not mention it's funding source
 
 (see http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2967540/).


This is a valid argument.

However, mentioning the funding source is not unheard of in medical 
citations. See the first example given here:

http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=citmedpart=A32352#A32755

Funding is consistently included on abstract pages. Examples:

http://www.plosone.org/article/info:doi/10.1371/journal.pone.0013614
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010548

Here, funding is included along with the publication data. It is a standard 
format.

Where references are hyperlinked, as in your counterexample, professionals 
can view the article. Our readers cannot, unless they have access to the
relevant academic database.

A.


  

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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-06 Thread FT2
Works for me.

FT2


On Fri, Nov 5, 2010 at 8:24 PM, Fred Bauder fredb...@fairpoint.net wrote:

  I think you have hit the nail on the head. Now we just need to drive it
  in
  the rest of the way.

 
  These ethics standards serve the ideal of communicating reliable
  knowledge to readers. This is one of the ideals that the Foundation was
  built upon. They are also expressly designed to protect and enhance the
  reputation of the publication that provides this information. While our
  reputation will never be able to compare to those of top medical
  journals,
  I see no reason why we should fail to take reasonable and feasible
  steps to
  protect it to the extent that we can, following the example of the best
  sources.
 
  Andreas
 

 So, disclosure of funding source when available, included in
 Template:Cite journal

 Fred


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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-06 Thread David Goodman
Does not work for me,, because it unreasonably implies that references
without it are not so funded.

On Sat, Nov 6, 2010 at 7:56 AM, FT2 ft2.w...@gmail.com wrote:
 Works for me.

 FT2


 On Fri, Nov 5, 2010 at 8:24 PM, Fred Bauder fredb...@fairpoint.net wrote:

  I think you have hit the nail on the head. Now we just need to drive it
  in
  the rest of the way.

 
  These ethics standards serve the ideal of communicating reliable
  knowledge to readers. This is one of the ideals that the Foundation was
  built upon. They are also expressly designed to protect and enhance the
  reputation of the publication that provides this information. While our
  reputation will never be able to compare to those of top medical
  journals,
  I see no reason why we should fail to take reasonable and feasible
  steps to
  protect it to the extent that we can, following the example of the best
  sources.
 
  Andreas
 

 So, disclosure of funding source when available, included in
 Template:Cite journal

 Fred


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-- 
David Goodman, Ph.D, M.L.S.
http://en.wikipedia.org/wiki/User_talk:DGG

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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-06 Thread John Vandenberg
By flagging a piece of research as 'funding by ACME Big Pharma', we
suggest that the research is somehow flawed, without clearly saying
it, without any evidence, and without sources that support our
suggestion.

This is akin to adding categories which are not unambiguously
supported by prose and references in the body of an article.

We should not cast sources into a bad light by suggesting their
research is clouded by the funding unless reliable sources have said
so first.

Often the problem is _not_ that the research which is published is
bad, but that unfavourable research is not published.  In this case,
casting a shadow over the published work does not help the reader, and
does not impact upon the unpublished research.

Wikipedia should not be used as a platform to attack the systemic
problem of industry funded research in some areas of medicine.

We have articles about this topic; that should be the extent of the platform.

Respected journals have occasionally been caught out, and they are
becoming more astute about checking the submissions.  It is
appropriate that journals expect that researchers provide information
to _them_ about potential conflict of interests, so it can be
available for peer-reviewers both before and after publishing.  Where
it is failing, journalists and researchers need to highlight the
problems, and journal editors need to improve their processes to
prevent the problem, or at least ensure that the researchers have
breached their policies when the problems are exposed.

--
John Vandenberg

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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-06 Thread Andreas Kolbe
John, by your rationale, every scholarly journal that follows defined 
ethics guidelines *requiring* that the funding be disclosed impugns the 
authors' integrity. Does it really? 

There is a difference between transparency and assumption of wrongdoing; 
and history is full of people who resisted transparency with similar 
arguments. It is like saying our politicians should not have to disclose 
their expenses, because asking them to do so implies an assumption of
wrongdoing on their part. There is no such assumption, but there is also
a recognition in society that transparency helps prevent abuse.

As for David's point, 

 Does not work for me,, because it
 unreasonably implies that references
 without it are not so funded.

ways around this can easily be found, if there is a will to do so. For 
example, if the funding field is left empty, it could be made to default to 
something like no data available. 

Andreas


--- On Sun, 7/11/10, John Vandenberg jay...@gmail.com wrote:

 From: John Vandenberg jay...@gmail.com
 By flagging a piece of research as
 'funding by ACME Big Pharma', we
 suggest that the research is somehow flawed, without
 clearly saying
 it, without any evidence, and without sources that support
 our
 suggestion.
 
 This is akin to adding categories which are not
 unambiguously
 supported by prose and references in the body of an
 article.
 
 We should not cast sources into a bad light by suggesting
 their
 research is clouded by the funding unless reliable sources
 have said
 so first.
 
 Often the problem is _not_ that the research which is
 published is
 bad, but that unfavourable research is not published. 
 In this case,
 casting a shadow over the published work does not help the
 reader, and
 does not impact upon the unpublished research.
 
 Wikipedia should not be used as a platform to attack the
 systemic
 problem of industry funded research in some areas of
 medicine.
 
 We have articles about this topic; that should be the
 extent of the platform.
 
 Respected journals have occasionally been caught out, and
 they are
 becoming more astute about checking the submissions. 
 It is
 appropriate that journals expect that researchers provide
 information
 to _them_ about potential conflict of interests, so it can
 be
 available for peer-reviewers both before and after
 publishing.  Where
 it is failing, journalists and researchers need to
 highlight the
 problems, and journal editors need to improve their
 processes to
 prevent the problem, or at least ensure that the
 researchers have
 breached their policies when the problems are exposed.
 
 --
 John Vandenberg
 
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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-06 Thread Andreas Kolbe
--- On Sun, 7/11/10, John Vandenberg jay...@gmail.com wrote:
 It is
 appropriate that journals expect that researchers provide
 information
 to _them_ about potential conflict of interests, so it can
 be
 available for peer-reviewers both before and after
 publishing.  


In case this was not clear to you, journals *publish* this information as
part of the paper, for the benefit of their readers.

A.


  

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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-05 Thread Arlen Beiler
I think you have hit the nail on the head. Now we just need to drive it in
the rest of the way.

On Thu, Nov 4, 2010 at 10:40 AM, Andreas Kolbe jayen...@yahoo.com wrote:

 --- On Tue, 2/11/10, John Vandenberg jay...@gmail.com wrote:
  On Tue, Nov 2, 2010 at 3:36 AM,
  wjhon...@aol.com
  wrote:
  ..
   There have been plenty of studies on drugs, which were
  not paid for, by
   anyone with a vested monetary interest in changing the
  drug's market outlook.
   Being flippant as John was, hardly forwards the
  conversation.
 
  The point I was making is that there is a lot of different
  types of
  research, funded by different groups with different
  agendas.
 
  The PLOS Medicine article is based on a dataset of 78
  interventional
  studies, 81 observational studies, and only 47 scientific
  reviews.
  Also, they do not dissect the data based on the
  reputability of the
  publishing venue.
 
  We should only use peer-reviewed research published in
  reputable
  journals, which eliminates vast quantities of 'research'.



 We have had a number of red herrings and strawmen in this discussion so
 far:

 1. That this is about editors' POV pushing.

 -- It isn't in my case. I don't edit this topic area. What I am concerned
   about is that we do not appear to follow the publication ethics of
   the best journalistic and scholarly sources in this field.

 2. That this is an issue associated with poorly sourced studies, and would
   be resolved by making sure we use reputable sources.

 -- This is about peer-reviewed research in the best journals, like The
   Lancet, JAMA, and so forth. The editors of these journals decided that,
   as a fundamental point of publishing ethics, they would disclose
   conflict-of-interest information in all biomedical research articles.
   The editors of these journals felt this was vital to safeguard the
   credibility of the journal, the authors, and of science itself.

 3. That this is only about individual studies, which shouldn't be used as
   sources anyway, and that the problem is resolved automatically by using
   systematic reviews.

 -- The editors of JAMA, The Lancet, etc. have specifically pointed out -
   http://www.icmje.org/ethical_4conflicts.html - that Disclosure of such
   relationships is also important in connection with editorials and review
   articles. In other words, reviews are as subject to conflicts of
   interest as clinical trials. In addition, our guidelines allow citation
   of individual studies, and many are in fact cited, without available
   conflict-of-interest information included.

 4. That this standard is about scholarly publishing, and doesn't apply to
   us as encyclopedists/journalists.

 -- The gold standard for journalism is the same as for scholarly
   publishing: If you cite researchers or studies, disclose their
   conflicts of interests.

 5. That this would inflate the article by adding extraneous detail.

 -- We are typically talking about the addition of four words: sponsored by
   the manufacturer, funded by the British Heart Foundation, etc.

 6. That reliable sources mentioning such research do not mention funding,
   and that therefore we shouldn't either.

 -- Many do. Some that do not have been severely criticised for it.

 7. That this would lead editors to add further extraneous POV detail.

 -- This is addressed by existing policies and guidelines, which require
   that cited sources should directly address the article topic. In
   addition, disclosing conflicts of interest as a matter of course is
   likely to help placate editors concerned about research bias, thereby
   reducing the number of disputes initiated by such editors.

 8. That this would lead to our having to report funding sources for
   research in other areas, such as computing.

 -- We take our cues from what reliable sources do. There would be no basis
   for requiring editors to report funding of cited computing studies,
   unless there were a well-defined publishing ethics standard in
   computing, similar to the publishing standard established for biomedical
   research.

 These ethics standards serve the ideal of communicating reliable
 knowledge to readers. This is one of the ideals that the Foundation was
 built upon. They are also expressly designed to protect and enhance the
 reputation of the publication that provides this information. While our
 reputation will never be able to compare to those of top medical journals,
 I see no reason why we should fail to take reasonable and feasible steps to
 protect it to the extent that we can, following the example of the best
 sources.

 Andreas




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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-05 Thread Fred Bauder
 I think you have hit the nail on the head. Now we just need to drive it
 in
 the rest of the way.


 These ethics standards serve the ideal of communicating reliable
 knowledge to readers. This is one of the ideals that the Foundation was
 built upon. They are also expressly designed to protect and enhance the
 reputation of the publication that provides this information. While our
 reputation will never be able to compare to those of top medical
 journals,
 I see no reason why we should fail to take reasonable and feasible
 steps to
 protect it to the extent that we can, following the example of the best
 sources.

 Andreas


So, disclosure of funding source when available, included in
Template:Cite journal

Fred


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Re: [Foundation-l] Funding Sources of Medical Research, was Misplaced Reliance, was Re: Paid editing...

2010-11-04 Thread Andreas Kolbe
--- On Tue, 2/11/10, John Vandenberg jay...@gmail.com wrote:
 On Tue, Nov 2, 2010 at 3:36 AM, 
 wjhon...@aol.com
 wrote:
 ..
  There have been plenty of studies on drugs, which were
 not paid for, by
  anyone with a vested monetary interest in changing the
 drug's market outlook.
  Being flippant as John was, hardly forwards the
 conversation.
 
 The point I was making is that there is a lot of different
 types of
 research, funded by different groups with different
 agendas.
 
 The PLOS Medicine article is based on a dataset of 78
 interventional
 studies, 81 observational studies, and only 47 scientific
 reviews.
 Also, they do not dissect the data based on the
 reputability of the
 publishing venue.
 
 We should only use peer-reviewed research published in
 reputable
 journals, which eliminates vast quantities of 'research'.



We have had a number of red herrings and strawmen in this discussion so 
far:

1. That this is about editors' POV pushing. 

-- It isn't in my case. I don't edit this topic area. What I am concerned 
   about is that we do not appear to follow the publication ethics of
   the best journalistic and scholarly sources in this field.

2. That this is an issue associated with poorly sourced studies, and would 
   be resolved by making sure we use reputable sources.

-- This is about peer-reviewed research in the best journals, like The 
   Lancet, JAMA, and so forth. The editors of these journals decided that, 
   as a fundamental point of publishing ethics, they would disclose  
   conflict-of-interest information in all biomedical research articles. 
   The editors of these journals felt this was vital to safeguard the
   credibility of the journal, the authors, and of science itself.

3. That this is only about individual studies, which shouldn't be used as 
   sources anyway, and that the problem is resolved automatically by using
   systematic reviews.

-- The editors of JAMA, The Lancet, etc. have specifically pointed out -
   http://www.icmje.org/ethical_4conflicts.html - that Disclosure of such 
   relationships is also important in connection with editorials and review 
   articles. In other words, reviews are as subject to conflicts of 
   interest as clinical trials. In addition, our guidelines allow citation 
   of individual studies, and many are in fact cited, without available
   conflict-of-interest information included.

4. That this standard is about scholarly publishing, and doesn't apply to 
   us as encyclopedists/journalists.

-- The gold standard for journalism is the same as for scholarly
   publishing: If you cite researchers or studies, disclose their 
   conflicts of interests.

5. That this would inflate the article by adding extraneous detail.

-- We are typically talking about the addition of four words: sponsored by 
   the manufacturer, funded by the British Heart Foundation, etc.

6. That reliable sources mentioning such research do not mention funding,
   and that therefore we shouldn't either.

-- Many do. Some that do not have been severely criticised for it.

7. That this would lead editors to add further extraneous POV detail.

-- This is addressed by existing policies and guidelines, which require 
   that cited sources should directly address the article topic. In 
   addition, disclosing conflicts of interest as a matter of course is 
   likely to help placate editors concerned about research bias, thereby 
   reducing the number of disputes initiated by such editors.

8. That this would lead to our having to report funding sources for 
   research in other areas, such as computing.

-- We take our cues from what reliable sources do. There would be no basis 
   for requiring editors to report funding of cited computing studies, 
   unless there were a well-defined publishing ethics standard in 
   computing, similar to the publishing standard established for biomedical 
   research. 

These ethics standards serve the ideal of communicating reliable 
knowledge to readers. This is one of the ideals that the Foundation was 
built upon. They are also expressly designed to protect and enhance the 
reputation of the publication that provides this information. While our 
reputation will never be able to compare to those of top medical journals,
I see no reason why we should fail to take reasonable and feasible steps to 
protect it to the extent that we can, following the example of the best 
sources.

Andreas


  

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