Re: how to solve the problem to install R?
On Sun, 26 Aug 2012 08:41:35 -0400, contro opinion wrote: > when i make configure ,there is a wrong output,how can i do now? That's impossible. Are you sure your ports collection is properly updated and complete? The "screenshot" I've inserted has been directly copied from the terminal. As R has settable options, "make configure" (_after_ "make rmconfig" to limit the possibilities of mistakes) is supposed to bring up the configuration dialog I showed. Then you proceed to show messages from a "make" or "make install" command: > Downloaded 689.8 kilobytes in 3:35 seconds. (3.19 KB/s) > ===> Found saved configuration for png-1.5.12 > => SHA256 Checksum mismatch for libpng-1.5.12.tar.xz. > => SHA256 Checksum OK for libpng-1.5.12-apng.patch.gz. > ===> Giving up on fetching files: libpng-1.5.12.tar.xz > Make sure the Makefile and distinfo file (/usr/ports/graphics/png/distinfo) > are up to date. If you are absolutely sure you want to override this > check, type "make NO_CHECKSUM=yes [other args]". > *** Error code 1 > > Stop in /usr/ports/graphics/png. > *** Error code 1 > > Stop in /usr/ports/graphics/png. > *** Error code 1 > > Stop in /usr/ports/graphics/png. > *** Error code 1 Another problem with png (libpng is a dependency of R). Make sure your ports tree is up to date. Don't forget to # make clean prior to any new build attempt. As I said, I've partially checked things here on my system, and I get the configuration dialog and can even get around the BROKEN warning by deselecting PDF_MANUALS. Start in a clean environment. Follow the steps as described in the manuals (e. g. "man 7 ports") and The FreeBSD Handbook and you should be fine. In _worst_ case, try # pkg_add -r R to do a binary install. -- Polytropon Magdeburg, Germany Happy FreeBSD user since 4.0 Andra moi ennepe, Mousa, ... ___ freebsd-questions@freebsd.org mailing list http://lists.freebsd.org/mailman/listinfo/freebsd-questions To unsubscribe, send any mail to "freebsd-questions-unsubscr...@freebsd.org"
Re: how to solve the problem to install R?
when i make configure ,there is a wrong output,how can i do now?
Downloaded 689.8 kilobytes in 3:35 seconds. (3.19 KB/s)
===> Found saved configuration for png-1.5.12
=> SHA256 Checksum mismatch for libpng-1.5.12.tar.xz.
=> SHA256 Checksum OK for libpng-1.5.12-apng.patch.gz.
===> Giving up on fetching files: libpng-1.5.12.tar.xz
Make sure the Makefile and distinfo file (/usr/ports/graphics/png/distinfo)
are up to date. If you are absolutely sure you want to override this
check, type "make NO_CHECKSUM=yes [other args]".
*** Error code 1
Stop in /usr/ports/graphics/png.
*** Error code 1
Stop in /usr/ports/graphics/png.
*** Error code 1
Stop in /usr/ports/graphics/png.
*** Error code 1
Stop in /usr/ports/math/R.
*** Error code 1
Stop in /usr/ports/math/R.
2012/8/26 Polytropon
> { Re-including list, hope that's okay. }
>
>
> On Sun, 26 Aug 2012 00:14:37 -0400, contro opinion wrote:
> > # cd /usr/ports/math/R
> > [root@sea /usr/ports/math/R]# make configure
> > ===> R-2.15.1 is marked as broken: The PDF_MANUALS option cannot be
> used,
> > because print/texinfo is incompatible with print/teTeX-base.
> > *** Error code 1
> >
> > Stop in /usr/ports/math/R.
> >
> >
> > how can i do now?
>
> I have the same port version here, and I can get to the
> configuration menu. First of all, make sure you have done
>
> # make rmconfig
>
> And then you should see no error message when doing
>
> # make configure
>
> And in the menu, do _not_ select PDF_MANUALS. Having
> examined the port's Makefile for the BROKEN variable
> and other options that might "trigger" it, it seems
> that the R port has significant problems regarding
> its documentation.
>
> ++
> | Options for R 2.15.1 |
> | ++ |
> | | [ ] ATLAS Use ATLAS instead of BLAS/LAPACK | |
> | | [X] GHOSTSCRIPT [dev2]bitmap() graphics devices | |
> | | [X] ICU Use ICU for collation in multibyte locales | |
> => | | [X] INFO_MANUALS GNU info manuals | |
> | | [X] JPEG jpeg() graphics device | |
> | | [ ] LETTER_PAPER US Letter paper | |
> | | [X] LIBR R shared library and a dynamically-linked R | |
> | | [X] PANGOCAIROcairo and pango graphics support | |
> | | [X] PCRE_PORT Use devel/pcre instead of the bundled PCRE | |
> => | | [ ] PDF_MANUALS PDF manuals (requires TeX) | |
> | | [X] PNG png() graphics device| |
> | | [X] TCLTK tcltk package| |
> | | [X] THREADS Threading support| |
> | | [X] X11 X11() graphics device| |
> | || |
> +-++-+
> | [ OK ] Cancel|
> ++
>
> Then you should be able to continue building (will possibly pull
> gcc 4.6.3, this is the point where I stopped testing it myself.
>
> If this doesn't work, again remove the configuration and re-enter
> it by "make configure": Then deselect INFO_MANUALS also. As I
> said, the port's Makefile shows:
>
> .if ${PORT_OPTIONS:MINFO_MANUALS} && ${PORT_OPTIONS:MDOCS}
> ALL_TARGET+=info
> INFO= R-FAQ R-admin R-data R-exts R-intro R-lang
> .endif
>
> .if ${PORT_OPTIONS:MPDF_MANUALS} && ${PORT_OPTIONS:MDOCS}
> BROKEN =The PDF_MANUALS option cannot be used, because\
> print/texinfo is incompatible with print/teTeX-base
> BUILD_DEPENDS +=pdftex:${PORTSDIR}/print/teTeX-base \
> texi2dvi:${PORTSDIR}/print/texinfo
> ALL_TARGET+=pdf
> CONFIGURE_ENV +=INSTALL_INFO="${LOCALBASE}/bin/install-info" \
> MAKEINFO="${LOCALBASE}/bin/makeinfo"
> INSTALL_TARGET+=install-pdf
> PLIST_SUB+= PDF_MANUAL=""
> .else
> PLIST_SUB+= PDF_MANUAL="@comment "
> .endif
> .endif # LIBR_SLAVEPORT
> .endif # !LIBRMATH_SLAVEPORT
>
> Keywords are MDOCS and MINFO_MANUALS here. So if the problem
> might be inherited from other ports (mdoc related?), you could
> do
>
> # make rmconfig-recursive
>
> followed by
>
> # make config-recursive
>
> to visit and carefully check all configuration screens that might
> have an option that "triggers" the BROKEN mechanism, possibly
> related to some info, texinfo, teTex or other dependency for the
> documentation of R.
>
> Finally, you could try to install R from package (via p
Re: how to solve the problem to install R?
{ Re-including list, hope that's okay. }
On Sun, 26 Aug 2012 00:14:37 -0400, contro opinion wrote:
> # cd /usr/ports/math/R
> [root@sea /usr/ports/math/R]# make configure
> ===> R-2.15.1 is marked as broken: The PDF_MANUALS option cannot be used,
> because print/texinfo is incompatible with print/teTeX-base.
> *** Error code 1
>
> Stop in /usr/ports/math/R.
>
>
> how can i do now?
I have the same port version here, and I can get to the
configuration menu. First of all, make sure you have done
# make rmconfig
And then you should see no error message when doing
# make configure
And in the menu, do _not_ select PDF_MANUALS. Having
examined the port's Makefile for the BROKEN variable
and other options that might "trigger" it, it seems
that the R port has significant problems regarding
its documentation.
++
| Options for R 2.15.1 |
| ++ |
| | [ ] ATLAS Use ATLAS instead of BLAS/LAPACK | |
| | [X] GHOSTSCRIPT [dev2]bitmap() graphics devices | |
| | [X] ICU Use ICU for collation in multibyte locales | |
=> | | [X] INFO_MANUALS GNU info manuals | |
| | [X] JPEG jpeg() graphics device | |
| | [ ] LETTER_PAPER US Letter paper | |
| | [X] LIBR R shared library and a dynamically-linked R | |
| | [X] PANGOCAIROcairo and pango graphics support | |
| | [X] PCRE_PORT Use devel/pcre instead of the bundled PCRE | |
=> | | [ ] PDF_MANUALS PDF manuals (requires TeX) | |
| | [X] PNG png() graphics device| |
| | [X] TCLTK tcltk package| |
| | [X] THREADS Threading support| |
| | [X] X11 X11() graphics device| |
| || |
+-++-+
| [ OK ] Cancel|
++
Then you should be able to continue building (will possibly pull
gcc 4.6.3, this is the point where I stopped testing it myself.
If this doesn't work, again remove the configuration and re-enter
it by "make configure": Then deselect INFO_MANUALS also. As I
said, the port's Makefile shows:
.if ${PORT_OPTIONS:MINFO_MANUALS} && ${PORT_OPTIONS:MDOCS}
ALL_TARGET+=info
INFO= R-FAQ R-admin R-data R-exts R-intro R-lang
.endif
.if ${PORT_OPTIONS:MPDF_MANUALS} && ${PORT_OPTIONS:MDOCS}
BROKEN =The PDF_MANUALS option cannot be used, because\
print/texinfo is incompatible with print/teTeX-base
BUILD_DEPENDS +=pdftex:${PORTSDIR}/print/teTeX-base \
texi2dvi:${PORTSDIR}/print/texinfo
ALL_TARGET+=pdf
CONFIGURE_ENV +=INSTALL_INFO="${LOCALBASE}/bin/install-info" \
MAKEINFO="${LOCALBASE}/bin/makeinfo"
INSTALL_TARGET+=install-pdf
PLIST_SUB+= PDF_MANUAL=""
.else
PLIST_SUB+= PDF_MANUAL="@comment "
.endif
.endif # LIBR_SLAVEPORT
.endif # !LIBRMATH_SLAVEPORT
Keywords are MDOCS and MINFO_MANUALS here. So if the problem
might be inherited from other ports (mdoc related?), you could
do
# make rmconfig-recursive
followed by
# make config-recursive
to visit and carefully check all configuration screens that might
have an option that "triggers" the BROKEN mechanism, possibly
related to some info, texinfo, teTex or other dependency for the
documentation of R.
Finally, you could try to install R from package (via pkg_add -r).
The Makefile doesn't define RDEPS (runtime dependencies), so that
should be relatively easy. The LaTeX dependency seems to be a
build dependency (see Makefile excerpt above).
If you don't have success with any advice, maybe file a ports PR.
--
Polytropon
Magdeburg, Germany
Happy FreeBSD user since 4.0
Andra moi ennepe, Mousa, ...
___
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Re: how to solve the problem to install R?
On Sat, 25 Aug 2012 21:32:55 -0400, contro opinion wrote: > [root@sea ~]# cd /usr/ports/math/R > [root@sea /usr/ports/math/R]# make install clean > ===> R-2.15.1 is marked as broken: The PDF_MANUALS option cannot be used, > because print/texinfo is incompatible with print/teTeX-base. > *** Error code 1 > > Stop in /usr/ports/math/R. Enter the command # make configure and deselect the PDF_MANUALS option. (Not tested!) This should leave you with GNU info manuals if you keep that option selected. Then repeat the installation command. -- Polytropon Magdeburg, Germany Happy FreeBSD user since 4.0 Andra moi ennepe, Mousa, ... ___ freebsd-questions@freebsd.org mailing list http://lists.freebsd.org/mailman/listinfo/freebsd-questions To unsubscribe, send any mail to "freebsd-questions-unsubscr...@freebsd.org"
how to solve the problem to install R?
[root@sea ~]# cd /usr/ports/math/R [root@sea /usr/ports/math/R]# make install clean ===> R-2.15.1 is marked as broken: The PDF_MANUALS option cannot be used, because print/texinfo is incompatible with print/teTeX-base. *** Error code 1 Stop in /usr/ports/math/R. ___ freebsd-questions@freebsd.org mailing list http://lists.freebsd.org/mailman/listinfo/freebsd-questions To unsubscribe, send any mail to "freebsd-questions-unsubscr...@freebsd.org"
