[Freesurfer] make_average_subject error in T1.mgz and t1.mgz
lt;pgt;Dear FS experts,lt;br /gt;I use FS5.1 and previous data run on other machine. When I try to make_average_subjects program, I get error message that it can not get T1.mgz data from subject folder. When I check my dataset, actually it has t1.mgz rather than T1.mgz. how could I change the setting from T1.mgz to t1.mgzlt;br /gt;thanks helplt;br /gt;JLHlt;/pgt;___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] A question about the coords of the vertex
Hi all, I have a question about the coords of vertex in ?h.white file. I load the ?h.white file in Matlab and get a variable called vertex_coords, and I'm wondering what kind of coords they are, MNI or something else? Also how can I get the MNI coords of the vertex? Thank in advance, Best Regards, Lijie Huang ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] qustions about contents of label file
Hello: I use qdec to generate statistical significant areas and draw ROI and map the ROI to each subject ,finally i get a label file of each subject called lh.supriorfrontal.label which can be seen in attachment below.But i'm a little confused with content of the label file, Is it correct that,take the third row as an example,the first number 66847 means vertex index and -10.184 -3.059 74.153 means coordinate which belongs to MNI coordinate system? Besides,what does the last number 0.00 mean? Any help will be appreciative,Thanks#!ascii label , from subject NC001_R_F vox2ras=TkReg 538 66847 -10.184 -3.059 74.153 0.00 81214 -5.985 9.777 79.988 0.00 70369 -6.045 -1.003 70.503 0.00 62209 -3.632 -8.143 69.280 0.00 76787 -9.605 6.072 79.923 0.00 81186 -3.308 9.202 83.766 0.00 75659 -5.300 4.339 77.346 0.00 87742 -3.387 15.165 76.966 0.00 68014 -9.321 -2.567 71.315 0.00 64564 -5.955 -5.627 67.998 0.00 63308 -6.715 -6.715 70.826 0.00 72441 -10.990 2.207 77.064 0.00 75642 -7.627 5.043 78.336 0.00 72489 -9.493 1.337 74.370 0.00 73546 -6.718 1.928 73.747 0.00 82323 -4.862 10.406 82.019 0.00 86560 -4.074 14.339 82.167 0.00 85443 -5.798 13.640 79.396 0.00 78916 -6.586 7.805 83.501 0.00 81179 -3.831 9.351 85.033 0.00 77843 -5.115 6.503 82.305 0.00 77857 -3.665 6.189 81.723 0.00 78953 -2.699 7.223 80.223 0.00 76840 -2.894 4.990 77.493 0.00 74576 -3.457 3.157 74.126 0.00 64428 -7.243 -5.364 74.475 0.00 62173 -4.158 -7.189 72.089 0.00 59911 -1.004 -9.745 70.622 0.00 85410 -3.035 13.508 84.531 0.00 66857 -10.073 -2.523 72.737 0.00 64504 -8.664 -5.054 70.679 0.00 64471 -8.770 -4.994 72.543 0.00 71392 -10.661 0.122 75.952 0.00 73523 -10.067 1.920 75.679 0.00 70331 -10.328 -0.467 73.758 0.00 70330 -9.713 -0.398 73.133 0.00 81204 -5.051 9.754 81.029 0.00 83359 -5.362 11.402 82.004 0.00 84378 -6.318 12.229 80.608 0.00 85453 -5.925 13.761 78.183 0.00 83385 -6.801 11.382 79.304 0.00 82349 -6.680 10.543 78.971 0.00 70378 -3.872 -1.236 69.634 0.00 69242 -5.132 -1.875 69.183 0.00 61116 -4.285 -7.933 68.678 0.00 64563 -5.544 -5.391 67.391 0.00 61127 -4.025 -7.887 68.109 0.00 61137 -2.651 -8.655 67.337 0.00 61125 -2.458 -8.592 68.171 0.00 77861 -8.022 6.944 81.097 0.00 78930 -6.295 7.115 82.395 0.00 77860 -7.025 6.811 81.069 0.00 75641 -6.563 4.816 78.257 0.00 76803 -6.331 5.362 79.564 0.00 76801 -4.213 5.197 79.427 0.00 78941 -2.580 7.228 80.953 0.00 76800 -3.132 5.684 79.551 0.00 77886 -2.443 6.530 79.057 0.00 75638 -3.735 4.588 77.848 0.00 71434 -6.859 0.619 72.173 0.00 73544 -5.041 2.288 73.598 0.00 72527 -5.190 0.883 71.811 0.00 63245 -5.893 -6.295 73.236 0.00 63243 -4.171 -6.505 73.796 0.00 81178 -3.448 9.033 84.367 0.00 82297 -3.616 10.564 84.986 0.00 84341 -3.626 11.963 84.502 0.00 87722 -3.922 15.377 78.739 0.00 87706 -3.379 15.228 81.535 0.00 69229 -8.155 -1.877 70.932 0.00 66873 -6.245 -3.056 68.754 0.00 65703 -7.474 -4.235 69.097 0.00 63329 -6.708 -6.670 69.177 0.00 62196 -4.439 -7.706 70.240 0.00 75645 -10.454 4.293 78.081 0.00 76805 -8.067 5.547 79.461 0.00 74531 -9.966 3.224 76.746 0.00 73508 -8.833 2.990 76.008 0.00 74547 -7.707 3.240 75.824 0.00 73520 -6.741 2.987 74.948 0.00 72487 -7.983 1.820 73.974 0.00 71436 -8.428 0.307 72.560 0.00 81187 -3.552 9.631 83.278 0.00 83350 -3.959 11.254 83.753 0.00 83358 -4.665 11.292 82.748 0.00 86569 -4.842 13.969 81.244 0.00 87723 -4.595 15.061 78.265 0.00 86598 -4.698 14.528 76.199 0.00 66883 -5.379 -2.949 68.116 0.00 81168 -4.623 9.704 85.474 0.00 80038 -5.124 8.421 84.623 0.00 78901 -3.733 7.793 84.204 0.00 78913 -3.515 7.590 83.362 0.00 77875 -6.365 6.002 80.624 0.00 77858 -4.731 6.105 81.763 0.00 78927 -3.350 7.555 82.587 0.00 80070 -3.422 8.074 82.287 0.00 80075 -4.237 8.435 80.985 0.00 80078 -4.422 8.408 80.142 0.00 80086 -5.277 8.836 78.954 0.00 78969 -4.037 7.888 78.953 0.00 78967 -2.655 7.055 78.314 0.00 77903 -1.808 6.438 76.467 0.00 74544 -4.919 3.815 75.357 0.00 75699 -3.350 4.243 75.464 0.00 67942 -10.460 -2.375 75.890 0.00 65676 -9.205 -4.206 74.390 0.00 71354 -10.832 0.215 76.894 0.00 64469 -7.084 -5.910 72.895 0.00 62184 -4.894 -7.287 71.417 0.00 62194 -2.854 -8.154 70.292 0.00 62171 -1.963 -7.554 72.200 0.00 61094 -1.840 -8.104 70.778 0.00 61112 -1.904 -8.926
