[Freesurfer] Select surface vertices
Hello all, I segmented a brain with FreeSurfer and I am very satisfied about the result. After that I visualized the T1.mgz together with the white surface in TkMedit. Now I am looking for interesting anatomical structures. My goal is to assign vertices in the white surface at the corresponding points and save the coordinates or better the index of the vertices. Later I will use the selected vertices in Matlab. I already read the surface with freesurfer_read_surf.m. Do you have a good procedure to do that? I appreciate any hint. Thank you so much in advance. Sincerely, Alexander ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] Nifti surface to FreeSurfer surface
Dear experts, I got BEM surfaces out of the BET tool from the FSL package. The surface files are in nifti format (*.nii.gz). Now I wonder if there is any opportunity to convert nifti surfaces to FreeSurfer surface in surf format (*.surf)? I appreciate any hint. Thank you so much in advance. Sincerely, Alexander ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] BEM surfaces
Dear experts, Currently I am playing around with the mri_watershed algorithm. After processing the T1.mgz from bert I got 256 COR files plus the COR-.info with the direction cosine information. mri_watershed -surf -useSRAS $SUBJECTS_DIR/bert/mri/T1.mgz $SUBJECTS_DIR/bert/bem/ Output in bert/bem/: COR-.info, COR-001 . COR-256 How can extract the information of these files which I need to proceed .mesh files in Matlab? Thank you so much in advance. Sincerely, Alexander ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
