Re: [Freesurfer] Why I have to set the environment every time

[Carolina Bonivento]

External Email - Use Caution

Hi Ziqian,
have you tried to set the environment by writing export 
FREESURFER_HOME=/Applications/freesurfer on the .bashrc (if using a Linux 
distribution) or .bash_profile (in using macOS)?
To do so open the .bashrc (or .bash_profile) with an editor, write the command 
and save. Then write on terminal 'source .bashrc’ (or 'source .bash_profile’). 
From then on the FREESURFER_HOME should be set to correct path.

Best,

Carolina

> Il giorno 20 lug 2018, alle ore 11:41, 王子谦  ha scritto:
> 
> External Email - Use Caution
> 
> 
> Hi,
>  
> Every time I wanna use the command of freesufer I have to reset the 
> environment again, otherwise it will remind me “not found the command”.
> Only after I write “export FREESURFER_HOME=/Applications/freesurfer;
> source $FREESURFER_HOME/SetUpFreeSurfer.sh”
> Then I can use it smoothly. But after I close the terminal, I have to rewrite 
> it again.
> Any suggestion is acceptable.
> Thanks a lot
>  
>  
> Ziqian
> ___
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addressed. If you believe this e-mail was sent to you in error and the e-mail
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Re: [Freesurfer] FreeSurfer License issue

[Carolina Bonivento]

External Email - Use CautionApologize, I forgot  to attach the file with the license. Here it is.Best regards,CarolinaCarolina Bonivento 
37084
 *Cl5ULwBr1to2
 FSr/.mH1ADRn2
Il giorno 20 lug 2018, alle ore 10:08, Carolina Bonivento <boniventocarol...@gmail.com> ha scritto:Dear Sir/Madame,I recently subscribed the FS license (attached) but when I tried to run  the 'recon-all’ (actually one of its steps, i.e. the MRI_ca_register) I received the following error message: ERROR: Invalid FreeSurfer license key found in license file /root/freesurfer/license.txtFollowing some instruction that I got previously, I replaced the .license with the license.txt in the $FREESURFER_HOME directory (in my case root/freesurfer) but I still get the same error message.Note that I’m running FreeSurfer through a Docker container running Ubuntu14 that is linked to the ‘freesurfer' folder on the' /User/home' of a macOS High Sierra (of course, Docker and the freesurfer folder are on the same machine). When I filled the license request form I’ve selected Linux/Intel as 'Operating System/Platform', as this is the OS of the Docker container. Is it possible that the issue is due to this? In that case, can I ask for a second license?Thank you in advance for your attention.Looking forward to hearing from you, I’m sending you my best regards,Carolina___
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
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dispose of the e-mail.

[Freesurfer] FreeSurfer License issue

[Carolina Bonivento]

External Email - Use Caution

Dear Sir/Madame,
I recently subscribed the FS license (attached) but when I tried to run  the 
'recon-all’ (actually one of its steps, i.e. the MRI_ca_register) I received 
the following error message: 

ERROR: Invalid FreeSurfer license key found in license file 
/root/freesurfer/license.txt

Following some instruction that I got previously, I replaced the .license with 
the license.txt in the $FREESURFER_HOME directory (in my case root/freesurfer) 
but I still get the same error message.

Note that I’m running FreeSurfer through a Docker container running Ubuntu14 
that is linked to the ‘freesurfer' folder on the' /User/home' of a macOS High 
Sierra (of course, Docker and the freesurfer folder are on the same machine). 
When I filled the license request form I’ve selected Linux/Intel as 'Operating 
System/Platform', as this is the OS of the Docker container. Is it possible 
that the issue is due to this? In that case, can I ask for a second license?

Thank you in advance for your attention.

Looking forward to hearing from you, I’m sending you my best regards,

Carolina___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.