[Freesurfer] 回复： unable to map surface to fsaverage4
External Email - Use Caution Yes, it solved my problem. Thank you Greve. Hope next FS version will fix this bug. Best, Chenfei -- 原始邮件 -- 发件人: "Greve, Douglas N.,Ph.D."; 发送时间: 2019年3月7日(星期四) 凌晨2:30 收件人: "freesurfer@nmr.mgh.harvard.edu"; 主题: Re: [Freesurfer] unable to map surface to fsaverage4 This is a bug in mris_preproc. I have created a new version here https://gate.nmr.mgh.harvard.edu/safelinks/greve/mris_preproc Copy this to $FREESURFER_HOME/bin (after making a backup of the one that is there) let us know if this works On 3/2/19 8:57 AM, Chenfei YE wrote: > > External Email - Use Caution > > Hi, > > I'm following the process described in https://www.cloudneuro.org/ to > predict age based on cortical thickness of an individual brain. > I cannot map surface to the fsaverage4 template by the 2nd command: > > recon-all -s subject.id -qcache -target fsaverage4 > > The error was shown like > > mri_surf2surf: could not read surface > ./test2/surf/lh.fsaverage4.sphere.reg > > No such file or directory > > I tried to change the 1st command like: > > recon-all -i input_image -s subject.id -all -target fsavearge4 > > But still the same error. > > My FreeSurfer version is 6.0.0. Maybe that's why I cannot successfully > run the code in https://www.cloudneuro.org/. But is there any way to > solve this problem? Thank you. > > Chenfei > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] 回复： unable to map surface to fsaverage4
External Email - Use Caution Hi Tim, Thank you for your reply. Yes, the fsaverage4 folder has been copied from $FREESURFER_HOME/subjects to $SUBJECTS_DIR. But it didn't work. Do you have any other idea? Chenfei -- 原始邮件 -- 发件人: "Tim Schäfer"; 发送时间: 2019年3月3日(星期天) 晚上11:15 收件人: "Freesurfer support list"; 主题: Re: [Freesurfer] unable to map surface to fsaverage4 External Email - Use Caution Dear Chenfei, To successfully use the 'recon-all -qcache' command you listed, you would need to have the fsaverage4 subject in your $SUBJECTS_DIR. Did you copy it there before running the command? You can find it in $FREESURFER_HOME/subjects/fsaverage4. Best, Tim > On March 2, 2019 at 2:57 PM Chenfei YE wrote: > > > External Email - Use Caution > > Hi, > > I'm following the process described in https://www.cloudneuro.org/ to predict > age based on cortical thickness of an individual brain. > I cannot map surface to the fsaverage4 template by the 2nd command: > recon-all -s subject.id -qcache -target fsaverage4The error was shown like > mri_surf2surf: could not read surface > ./test2/surf/lh.fsaverage4.sphere.regNo such file or directory > > > > I tried to change the 1st command like: > recon-all -i input_image -s subject.id -all -target fsavearge4But still the > same error. > > > My FreeSurfer version is 6.0.0. Maybe that's why I cannot successfully run > the code in https://www.cloudneuro.org/. But is there any way to solve this > problem? Thank you. > > > > Chenfei___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] unable to map surface to fsaverage4
External Email - Use Caution Hi, I'm following the process described in https://www.cloudneuro.org/ to predict age based on cortical thickness of an individual brain. I cannot map surface to the fsaverage4 template by the 2nd command: recon-all -s subject.id -qcache -target fsaverage4The error was shown like mri_surf2surf: could not read surface ./test2/surf/lh.fsaverage4.sphere.regNo such file or directory I tried to change the 1st command like: recon-all -i input_image -s subject.id -all -target fsavearge4But still the same error. My FreeSurfer version is 6.0.0. Maybe that's why I cannot successfully run the code in https://www.cloudneuro.org/. But is there any way to solve this problem? Thank you. Chenfei___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
