[Freesurfer] Postdoctoral positions available

2018-10-16 Thread Chu, Catherine,M.D.
Multiple Postdoctoral Positions in Computational Neuroscience Available at 
Boston

University, and beyond.


Three, NIH-supported postdoctoral positions in computational neuroscience are 
available

immediately at Boston University in the labs of Uri Eden and Mark Kramer. The 
positions

center on two projects:


Project: Measure, model, and modulate cross-frequency coupling.

Team: An interdisciplinary team of researchers at BU (Mark Kramer and Uri Eden) 
and the

University of Minnesota (Alik Widge).

Goals: (i) Develop new statistical modeling methods to assess cross-frequency 
coupling

(CFC) in real-time, and deploy these tools in in vivo animal experiments. (ii) 
Develop simple,

biophysical models to identify candidate mechanisms of CFC.


Project: Assess human seizure dynamics across spatial and temporal scales.

Team: An interdisciplinary team of researchers at BU (Mark Kramer and Uri Eden)

Harvard/MGH (Sydney Cash), and Columbia University (Catherine Schevon).

Goals: (i) Analyze human seizure activity in a unique data set, consisting of 
invasive brain

voltage recordings across spatial scales - from single units to large brain 
areas, and temporal

scales - from high-frequency oscillations to slow brain rhythms. (ii) Build 
biophysical models to

probe how human seizures start, propagate, and stop.


For either project, the successful candidate will have a strong background in 
statistics

and computer programming; experience in interdisciplinary neuroscience research 
and

biophysical modeling is preferred, although not essential.


The positions are based at Boston University in the labs of Uri Eden and Mark 
Kramer. Both

projects are highly interdisciplinary and will involve frequent and extensive 
interactions with

neuroscientists at UMN (Alik Widge), or clinicians at Harvard/MGH (Sydney Cash) 
and

Columbia University (Catherine Schevon).


To apply, or for more information about the position, please send an email to 
Mark Kramer

(m...@math.bu.edu). Please include an updated CV, names and contact information 
of three

references, and a brief statement of your interest in the position and relevant 
qualifications.

Boston University offers a vibrant community of statistical, mathematical, and 
neuroscience

faculty and students, and many opportunities for collaboration within and 
outside the

University.



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[Freesurfer] MNI to RAS?

2015-01-27 Thread Chu, Catherine,M.D.
Hi,



Is there an easy way to convert MNI coordinates to Freesurfer RAS coordinate 
space?



Thanks!

Cat
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[Freesurfer] TrackVis either end command

2013-05-07 Thread Chu, Catherine,M.D.
Dear Freesurfer/TrackVis experts,

I am using the following command in a batchfile to identify tracks counts 
between dozens of preset ROIs.

track_vis DATAPATHtob0.trk -roi DATAPATHTOROI1.nii -roi2 DATAPATHTOROI2.nii -o 
PATHTOOUTPUT.trk  OUTPUT.txt -nr', i, j, i, j, i, j

Is there a line command I can use so that the tracks identified follow the rule 
either end in the ROIs instead of the default any part?

Thank you!
Cat
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addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.