External Email - Use Caution
I tried by specicying the subjects name, by following the below command.
aparcstats2table --hemi lh \ --subjects 004 021 040 067 080 092 \ --meas
thickness \ --parc aparc.a2009s \ --tablefile lh.aparc.a2009.thickness.tabl
But still I got the same error.
On Sun, Jan 19, 2020, 10:30 PM
wrote:
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>1. RES: Re: freesurfer container - freeview error
> (marc...@hucff.ufrj.br)
>2. registration of dwi images (Sam W)
>3. Re: registration of dwi images (Yendiki, Anastasia)
>4. Project hippocampus to inflated 3D model? (Mohammad Rashid)
>5. Re: aparcstats2table error (Devika K)
>6. Re: Project hippocampus to inflated 3D model? (Bruce Fischl)
>7. Re: aparcstats2table error (Bruce Fischl)
>
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> Message: 1
> Date: Sat, 18 Jan 2020 15:05:15 -0300
> From:
> Subject: [Freesurfer] RES: Re: freesurfer container - freeview error
> To: Freesurfer support list
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> Message: 2
> Date: Sun, 19 Jan 2020 00:52:10 +0100
> From: Sam W
> Subject: [Freesurfer] registration of dwi images
> To: Freesurfer support list
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> External Email - Use Caution
>
> Hello!
> I have run eddy on all my dwi images and then run bbregister using the
> first b0 image as the source image.
> The b0 image is now well aligned with the anatomical image but how can I
> apply the same transformation to all other dwi images in my dataset?
>
> After eddy correction I extracted the first b0 image (nodif.nii.gz) and run
> the bbregister command:
> bbregister --s sub001 --mov /home/samm/nodif.nii.gz --reg
> /home/samm/nodiffb2orig.dat --dti --init-fsl --o
> /home/samm/registered_b0.nii.gz
>
> Thanks!
> Sam
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> Message: 3
> Date: Sun, 19 Jan 2020 00:43:00 +
> From: "Yendiki, Anastasia"
> Subject: Re: [Freesurfer] registration of dwi images
> To: Freesurfer support list
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> Hi Sam - You can use mri_vol2vol to apply the transformation that was
> saved in the registration file nodiffb2orif.dat to any volume that's in the
> same space as nodif.nii.gz.
>
> a.y
>
> From: freesurfer-boun...@nmr.mgh.harvard.edu <
> freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Sam W <
> samf...@gmail.com>
> Sent: Saturday, January 18, 2020 6:52:10 PM
> To: Freesurfer support list
> Subject: [Freesurfer] registration of dwi images
>
>
> External Email - Use Caution
>
> Hello!
> I have run eddy on all my dwi images and then run bbregister using the
> first b0 image as the source image.
> The b0 image is now well aligned with the anatomical image but how can I
> apply the same transformation to all other dwi images in my dataset?
>
> After eddy correction I extracted the first b0 image (nodif.nii.gz) and
> run the bbregister command:
> bbregister --s sub001 --mov /home/samm/nodif.nii.gz --reg
> /home/samm/nodiffb2orig.dat --dti --init-fsl --o
> /home/samm/registered_b0.nii.gz
>
> Thanks!
> Sam
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