External Email - Use Caution
Hi Bruce
I am working on segmentation of brain regions. I wanted to know:
1. If it is possible that I could get brain segmented into 8 regions or
maybe 20, because when I segmented using recon-all command, I got
segmentation of 45 regions ?
2. I was looking at the capability of generating my own atlas using
tkmedit, but I was stuck at that as well.
3. Plus I don't understand which is the label image. I use the command
tkmedit subject_name image -aseg command to view the segmentations. The
aseg.mgz alone volume does not show all the segmented regions. If I want a
single volume that has the labels, how would I get that. I eventually want
a .nii label volume and .nii original volume
Thank You
On Thu, Dec 13, 2018 at 8:13 PM Bruce Fischl
wrote:
> Hi Fariha
>
> can give us more details? How would you like to customize them? I think
> the
> answer is probably no, but I'm not sure I understand what you are trying
> to
> do
> cheers
> Bruce
>
>
> On Wed,
> 12 Dec 2018, Fariha Muazzam wrote:
>
> >
> > External Email - Use Caution
> >
> > Hi
> >
> > I am working in Freesurfer for subcortical segmentation of brain, I did
> segmentation of a volume and
> > I got around 45 regions. Is it possible that I could customize the
> regions I want or number of
> > segments that I want?
> >
> > Thank You
> > Regards
> >
> > Fariha Muazzam
> > Research Officer
> >
> >
> --
> > Al-Khawarizmi Institute of Computer Science (KICS)
> >
> > University of Engineering and Technology (UET), Lahore
> >
> > Email: fariha.muaz...@kics.edu.pk | Web: www.kics.edu.pk
> >
> >
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