Re: [Freesurfer] retinotopy question

2007-06-27 Thread Lars Kuchinke

thanks Jon,

i didn't know that a simple block design analysis is possible to compute 
the visual area boundaries...
(which is the reason why I tried to fit it into the standard sfa-sess 
analysis)...

could you explain me (shortly) what to do than with my data

regards,
Lars.

-design info: 8hz flickering checkerbords, 20 scans at horizontal 
meridian, 20 scans vertical..x10 repetitions...





Jonathan Polimeni schrieb:

hi lars,

the FSFast retinotopy analysis stream is geared towards temporal phase
encoded data analysis, which produces field sign maps that can be used to
define area boundaries.

if you opt to use stationary wedge stimuli to activate the horizontal and
vertical meridian representations in visual cortex rather than the
traditional phase encoding stimulus paradigm, since the vertical and
horizontal meridian representations also lie along area boundaries, you
can identify them in your data through a standard block design paradigm
analysis. this is straightforward but outside the retinotopy stream.
instead you can use 'mkanalysis-sess' and 'selxavg3-sess' as described on
the fswiki.

of course it is possible to interpret your periodic stimulus as temporally
phase encoded and run the usual frequency analysis (i.e., 'sfa-sess'), but
i think that the block design analysis is more appropriate for your data.

hope this helps!


-jon



  



Lars Kuchinke, PhD
Freie Universität Berlin
Allgemeine Psychologie
Habelschwerdter Allee 45
14195 Berlin

[EMAIL PROTECTED]
www.fu-berlin.de/allgpsy
Tel:  030 838 55776

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[Freesurfer] retinotopy question

2007-06-26 Thread Lars Kuchinke

Hi all,

I used a retinotopy paradigm with two horizontal and vertical wedges 
located at the meridians (flickering at 8Hz, switching every 20 seconds)


do you think that this paradigm does fit into fsfastretinotopy analysis? 
I'm not sure if it makes a difference compared to rotating edges...

Any suggestions?


Thanks,
Lars

--


Lars Kuchinke, PhD
Freie Universität Berlin
Allgemeine Psychologie
Habelschwerdter Allee 45
14195 Berlin

[EMAIL PROTECTED]
www.fu-berlin.de/allgpsy
Tel:  030 838 55776


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[Freesurfer] Problems converting SPM functionals to bshort

2007-06-19 Thread Lars Kuchinke

Hi all,

is it possible to convert my functional SPM images (3d) to bshort (or 
bfloat) format using mri_convert?
Is still get stucked here, since mri_convert only allows me to convert 
one image instead of the full time series...


Is there an option to convert a list of old SPM 3d images?
I'm a bit confused so
I would appreciate any kind of help. Thanks.

Lars

--


Lars Kuchinke, PhD
Freie Universität Berlin
Allgemeine Psychologie
Habelschwerdter Allee 45
14195 Berlin

[EMAIL PROTECTED]
www.fu-berlin.de/allgpsy
Tel:  030 838 55776

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